Wall clock time and date at job start Tue Mar 31 2020 15:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46720 * 2 1 4 4 C 1.50693 * 109.47517 * 239.99602 * 2 1 3 5 5 H 1.08003 * 120.00284 * 239.99982 * 4 2 1 6 6 C 1.37882 * 119.99867 * 59.99697 * 4 2 1 7 7 N 1.31509 * 119.99969 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47023 * 60.00044 * 8 6 4 10 10 H 1.48502 * 109.47197 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47385 * 300.00144 * 8 6 4 12 12 C 1.50701 * 109.47194 * 119.99401 * 2 1 3 13 13 O 1.21281 * 120.00029 * 32.25898 * 12 2 1 14 14 N 1.34777 * 120.00055 * 212.26371 * 12 2 1 15 15 C 1.46498 * 119.99946 * 5.02103 * 14 12 2 16 16 C 1.50699 * 109.47473 * 84.66375 * 15 14 12 17 17 O 1.20829 * 119.99572 * 359.97438 * 16 15 14 18 18 O 1.34221 * 120.00289 * 179.97438 * 16 15 14 19 19 C 1.46505 * 119.99878 * 185.02302 * 14 12 2 20 20 C 1.50698 * 109.47132 * 89.99602 * 19 14 12 21 21 C 1.38256 * 119.96895 * 269.72596 * 20 19 14 22 22 C 1.38214 * 120.07201 * 179.76794 * 21 20 19 23 23 C 1.38404 * 119.99989 * 0.51049 * 22 21 20 24 24 F 1.35101 * 120.03661 * 179.72455 * 23 22 21 25 25 C 1.38649 * 119.93069 * 359.73795 * 23 22 21 26 26 F 1.35105 * 120.03704 * 180.02562 * 25 23 22 27 27 C 1.38214 * 119.96131 * 89.99896 * 20 19 14 28 28 H 1.09000 * 109.46487 * 173.47641 * 1 2 3 29 29 H 1.08997 * 109.47231 * 293.47173 * 1 2 3 30 30 H 1.08997 * 109.47155 * 53.47545 * 1 2 3 31 31 H 0.96998 * 120.00329 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46780 * 204.66333 * 15 14 12 33 33 H 1.08997 * 109.47137 * 324.66037 * 15 14 12 34 34 H 0.96696 * 117.00367 * 179.97438 * 18 16 15 35 35 H 1.09003 * 109.46985 * 209.99777 * 19 14 12 36 36 H 1.08997 * 109.47176 * 329.99557 * 19 14 12 37 37 H 1.08005 * 119.95645 * 0.02562 * 21 20 19 38 38 H 1.07995 * 119.99743 * 180.24932 * 22 21 20 39 39 H 1.07997 * 120.00467 * 359.95485 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8260 -2.5205 -4.0075 10 1 1.8271 -0.4202 -5.2204 11 1 3.8065 -1.1211 -4.0080 12 6 2.0324 -0.7103 1.2305 13 8 1.3971 -1.6296 1.7019 14 7 3.1876 -0.3238 1.8073 15 6 3.8984 0.8548 1.3055 16 6 3.3256 2.0954 1.9410 17 8 2.4165 2.0044 2.7316 18 8 3.8254 3.3013 1.6288 19 6 3.7323 -1.0823 2.9361 20 6 4.6450 -2.1648 2.4202 21 6 4.1361 -3.4171 2.1301 22 6 4.9704 -4.4101 1.6522 23 6 6.3188 -4.1544 1.4737 24 9 7.1360 -5.1262 1.0119 25 6 6.8303 -2.9001 1.7695 26 9 8.1461 -2.6481 1.5955 27 6 5.9912 -1.9063 2.2429 28 1 -0.3632 -1.0210 -0.1168 29 1 -0.3633 0.4093 0.9426 30 1 -0.3633 0.6116 -0.8258 31 1 0.7095 1.1616 -3.4844 32 1 4.9566 0.7743 1.5548 33 1 3.7837 0.9148 0.2233 34 1 3.4252 4.0678 2.0616 35 1 4.2947 -0.4123 3.5865 36 1 2.9152 -1.5337 3.4988 37 1 3.0846 -3.6184 2.2731 38 1 4.5708 -5.3867 1.4222 39 1 6.3883 -0.9288 2.4733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059261.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:24 Heat of formation + Delta-G solvation = -207.890074 kcal Electronic energy + Delta-G solvation = -28505.240807 eV Core-core repulsion = 24048.329010 eV Total energy + Delta-G solvation = -4456.911796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.52083 -49.60245 -41.67574 -40.57783 -39.75153 -37.15859 -36.37419 -35.85338 -33.05970 -32.11559 -31.74839 -29.41567 -27.56485 -27.08591 -24.47565 -24.15946 -23.02830 -22.50051 -19.97723 -19.16225 -18.97819 -18.45075 -18.41126 -18.12049 -17.90414 -17.41292 -17.36797 -17.08044 -16.47127 -16.23515 -16.02257 -15.89683 -15.52694 -15.13394 -14.95693 -14.75417 -14.48034 -14.11655 -13.84456 -13.60761 -13.41470 -13.17586 -13.04818 -12.88501 -12.80181 -12.74039 -12.54119 -12.44298 -12.27184 -12.18669 -12.10875 -11.73649 -11.10324 -10.65669 -10.40337 -10.08347 -9.87149 -9.68529 -8.16846 -6.31653 -0.20160 -0.00843 1.25312 1.44198 1.46084 1.52453 1.65507 1.87383 2.37085 2.47218 2.57702 2.75510 3.13336 3.25401 3.49791 3.62560 3.85235 4.00957 4.06407 4.14593 4.36079 4.44438 4.52323 4.68433 4.70955 4.73668 4.81064 4.87105 4.93253 5.03480 5.05674 5.35293 5.42348 5.52183 5.66438 5.67352 5.71458 5.83628 6.09943 6.34654 6.72526 7.05702 7.31277 7.40431 8.88920 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009342 B = 0.005247 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.648009 B = 5335.598457 C = 6754.151481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.031 3.969 3 H 0.036 0.964 4 C -0.524 4.524 5 H 0.052 0.948 6 C 0.031 3.969 7 N -0.906 5.906 8 Si 0.952 3.048 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.264 1.264 12 C 0.539 3.461 13 O -0.575 6.575 14 N -0.598 5.598 15 C 0.115 3.885 16 C 0.466 3.534 17 O -0.544 6.544 18 O -0.507 6.507 19 C 0.154 3.846 20 C -0.084 4.084 21 C -0.082 4.082 22 C -0.125 4.125 23 C 0.053 3.947 24 F -0.139 7.139 25 C 0.054 3.946 26 F -0.135 7.135 27 C -0.099 4.099 28 H 0.025 0.975 29 H 0.014 0.986 30 H 0.068 0.932 31 H 0.267 0.733 32 H 0.164 0.836 33 H 0.125 0.875 34 H 0.426 0.574 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.135 0.865 38 H 0.160 0.840 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.279 -0.239 9.834 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.009 3.991 3 H 0.054 0.946 4 C -0.562 4.562 5 H 0.070 0.930 6 C -0.170 4.170 7 N -0.544 5.544 8 Si 0.777 3.223 9 H -0.206 1.206 10 H -0.206 1.206 11 H -0.189 1.189 12 C 0.331 3.669 13 O -0.454 6.454 14 N -0.330 5.330 15 C -0.010 4.010 16 C 0.308 3.692 17 O -0.434 6.434 18 O -0.320 6.320 19 C 0.032 3.968 20 C -0.085 4.085 21 C -0.101 4.101 22 C -0.144 4.144 23 C 0.033 3.967 24 F -0.118 7.118 25 C 0.034 3.966 26 F -0.113 7.113 27 C -0.118 4.118 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.181 0.819 33 H 0.143 0.857 34 H 0.288 0.712 35 H 0.141 0.859 36 H 0.105 0.895 37 H 0.153 0.847 38 H 0.178 0.822 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 11.864 -0.962 9.959 15.519 hybrid contribution -0.091 -0.111 -0.835 0.847 sum 11.773 -1.073 9.124 14.933 Atomic orbital electron populations 1.21446 0.97090 0.99718 0.98728 1.18828 0.94131 0.95961 0.90132 0.94622 1.20820 1.32611 1.12729 0.90025 0.92988 1.25543 0.94714 0.95360 1.01346 1.69973 1.36350 1.23417 1.24640 0.85701 0.79270 0.78481 0.78818 1.20550 1.20645 1.18883 1.21511 0.78956 0.82514 0.83925 1.90499 1.57568 1.32147 1.65195 1.47655 1.23686 1.27197 1.34448 1.21255 0.99028 0.79369 1.01329 1.24348 0.80063 0.86218 0.78541 1.90730 1.29738 1.87719 1.35243 1.84481 1.62378 1.17114 1.67993 1.20475 0.96541 0.92123 0.87638 1.20223 0.93669 0.95290 0.99368 1.21247 1.00440 0.92401 0.96020 1.21234 0.90253 1.02327 1.00546 1.17920 0.89589 0.85499 1.03710 1.91493 1.72247 1.61422 1.86594 1.17754 0.79059 0.93845 1.05914 1.91510 1.31794 1.94543 1.93498 1.21172 0.91943 0.99773 0.98935 0.95620 0.96643 0.91333 0.92399 0.81892 0.85700 0.71238 0.85942 0.89519 0.84695 0.82238 0.80404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.67 8.39 71.98 0.60 -5.07 16 2 C 0.03 1.48 1.86 -12.29 -0.02 1.45 16 3 H 0.04 1.73 5.90 -2.39 -0.01 1.72 16 4 C -0.52 -26.90 8.38 25.60 0.21 -26.68 16 5 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 6 C 0.03 1.62 5.30 84.66 0.45 2.06 16 7 N -0.91 -48.39 11.40 21.45 0.24 -48.14 16 8 Si 0.95 41.12 29.54 68.60 2.03 43.15 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 12 C 0.54 23.23 6.44 87.66 0.56 23.79 16 13 O -0.58 -27.35 15.69 -3.03 -0.05 -27.39 16 14 N -0.60 -19.18 2.00 -830.49 -1.66 -20.84 16 15 C 0.11 3.01 5.63 85.63 0.48 3.50 16 16 C 0.47 12.85 7.76 71.24 0.55 13.40 16 17 O -0.54 -19.06 17.07 21.95 0.37 -18.69 16 18 O -0.51 -10.54 13.42 -51.33 -0.69 -11.23 16 19 C 0.15 3.80 5.55 85.63 0.47 4.28 16 20 C -0.08 -1.98 5.46 -19.87 -0.11 -2.09 16 21 C -0.08 -2.16 9.70 22.27 0.22 -1.94 16 22 C -0.12 -3.05 10.02 22.30 0.22 -2.82 16 23 C 0.05 1.37 7.31 22.41 0.16 1.53 16 24 F -0.14 -3.79 17.18 44.97 0.77 -3.02 16 25 C 0.05 1.30 7.31 22.41 0.16 1.47 16 26 F -0.13 -3.36 17.18 44.97 0.77 -2.58 16 27 C -0.10 -1.99 9.68 22.31 0.22 -1.77 16 28 H 0.02 1.32 8.05 -2.39 -0.02 1.30 16 29 H 0.01 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.07 3.66 6.27 -2.39 -0.01 3.64 16 31 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 32 H 0.16 2.54 8.03 -2.38 -0.02 2.52 16 33 H 0.13 3.86 6.44 -2.39 -0.02 3.85 16 34 H 0.43 5.39 9.10 -74.06 -0.67 4.72 16 35 H 0.12 2.07 8.02 -2.39 -0.02 2.05 16 36 H 0.09 2.44 7.30 -2.39 -0.02 2.42 16 37 H 0.14 3.88 7.85 -2.91 -0.02 3.86 16 38 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 39 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -69.25 350.84 6.43 -62.82 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.45 Total: 14.82 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 4.19 Total: 11.10 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -1.42 Total: -68.98 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -0.36 Total: -57.31 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 1.55 Total: -5.60 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -69.25 6.43 -62.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059261.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.067 kcal (2) G-P(sol) polarization free energy of solvation -69.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds