Wall clock time and date at job start Tue Mar 31 2020 15:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47357 * 2 1 4 4 C 1.50698 * 109.47159 * 120.00220 * 2 1 3 5 5 H 1.07996 * 120.00228 * 119.99897 * 4 2 1 6 6 C 1.37880 * 119.99536 * 300.00040 * 4 2 1 7 7 N 1.31508 * 120.00290 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99567 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46655 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.46920 * 299.99685 * 8 6 4 11 11 H 1.48491 * 109.47133 * 59.99666 * 8 6 4 12 12 C 1.50700 * 109.47011 * 239.99800 * 2 1 3 13 13 O 1.21276 * 120.00481 * 253.53557 * 12 2 1 14 14 N 1.34777 * 119.99930 * 73.53994 * 12 2 1 15 15 C 1.46501 * 119.99898 * 3.98725 * 14 12 2 16 16 C 1.50697 * 109.47503 * 95.20469 * 15 14 12 17 17 O 1.20829 * 119.99646 * 359.97438 * 16 15 14 18 18 O 1.34228 * 120.00140 * 180.02562 * 16 15 14 19 19 C 1.46503 * 120.00187 * 183.98740 * 14 12 2 20 20 C 1.50695 * 109.47148 * 89.99711 * 19 14 12 21 21 C 1.38257 * 119.96435 * 269.72518 * 20 19 14 22 22 C 1.38216 * 120.06970 * 179.77163 * 21 20 19 23 23 C 1.38418 * 119.99714 * 0.50216 * 22 21 20 24 24 F 1.35099 * 120.03222 * 179.72678 * 23 22 21 25 25 C 1.38645 * 119.93243 * 359.75304 * 23 22 21 26 26 F 1.35102 * 120.03868 * 179.97438 * 25 23 22 27 27 C 1.38220 * 119.96602 * 90.00409 * 20 19 14 28 28 H 1.08999 * 109.46805 * 305.56707 * 1 2 3 29 29 H 1.08998 * 109.46743 * 65.56570 * 1 2 3 30 30 H 1.09000 * 109.47298 * 185.56137 * 1 2 3 31 31 H 0.97004 * 119.99995 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.46932 * 215.20346 * 15 14 12 33 33 H 1.09000 * 109.47119 * 335.19795 * 15 14 12 34 34 H 0.96703 * 116.99680 * 179.97438 * 18 16 15 35 35 H 1.09001 * 109.46868 * 210.00076 * 19 14 12 36 36 H 1.08999 * 109.47020 * 329.99874 * 19 14 12 37 37 H 1.07997 * 119.96534 * 0.02562 * 21 20 19 38 38 H 1.07998 * 120.00316 * 180.25505 * 22 21 20 39 39 H 1.08002 * 119.99654 * 359.95225 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3225 -1.1196 4.0079 9 1 1.8278 -0.4192 5.2204 10 1 1.8280 -2.5199 4.0081 11 1 3.8074 -1.1191 4.0077 12 6 2.0323 -0.7105 -1.2304 13 8 2.5151 -1.8190 -1.1361 14 7 1.9451 -0.1139 -2.4358 15 6 1.4431 1.2585 -2.5393 16 6 2.6046 2.2186 -2.5538 17 8 3.7357 1.7995 -2.4844 18 8 2.3825 3.5394 -2.6428 19 6 2.3524 -0.8378 -3.6427 20 6 1.1688 -1.5813 -4.2058 21 6 0.9115 -2.8780 -3.8009 22 6 -0.1762 -3.5604 -4.3124 23 6 -1.0032 -2.9492 -5.2390 24 9 -2.0633 -3.6175 -5.7436 25 6 -0.7421 -1.6508 -5.6491 26 9 -1.5476 -1.0524 -6.5537 27 6 0.3449 -0.9684 -5.1310 28 1 -0.3633 0.5978 0.8359 29 1 -0.3633 0.4251 -0.9356 30 1 -0.3634 -1.0228 0.0996 31 1 0.7095 1.1618 3.4844 32 1 0.8702 1.3674 -3.4602 33 1 0.8022 1.4764 -1.6849 34 1 3.1590 4.1157 -2.6482 35 1 2.7226 -0.1293 -4.3837 36 1 3.1413 -1.5470 -3.3921 37 1 1.5587 -3.3568 -3.0810 38 1 -0.3785 -4.5718 -3.9922 39 1 0.5491 0.0433 -5.4493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059263.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:28 Heat of formation + Delta-G solvation = -185.023471 kcal Electronic energy + Delta-G solvation = -28307.564736 eV Core-core repulsion = 23851.644510 eV Total energy + Delta-G solvation = -4455.920226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.55463 -48.63245 -40.47768 -39.46222 -38.52901 -36.06811 -35.04758 -33.97038 -31.89829 -30.92884 -30.27127 -28.31434 -26.06486 -25.26821 -23.41942 -22.77259 -21.98707 -21.27004 -18.76537 -18.02204 -17.97268 -17.26767 -17.14511 -16.75454 -16.49188 -16.38907 -15.87541 -15.67417 -15.23355 -15.04720 -14.84126 -14.57710 -14.47181 -14.15121 -13.68990 -13.27290 -13.15022 -13.06516 -12.58403 -12.33321 -12.11167 -12.07161 -11.75783 -11.47369 -11.36996 -11.31473 -11.05317 -10.81623 -10.75266 -10.50867 -10.38157 -10.04034 -9.24499 -9.09512 -8.94761 -8.63101 -8.55103 -8.39492 -6.10097 -4.12997 0.75639 0.88225 2.33128 2.79496 3.14517 3.32936 3.35658 3.40942 3.55355 3.65473 3.71078 4.19323 4.40216 4.41378 4.60322 4.84557 4.96627 4.99901 5.16196 5.24545 5.33327 5.39473 5.59784 5.62328 5.73468 5.77523 5.91397 6.00823 6.32087 6.48170 6.58486 6.63441 6.66103 6.70099 6.83572 7.29792 7.60410 7.75724 7.95358 8.01306 8.22954 8.92208 8.97755 9.52385 10.97997 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011898 B = 0.004184 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.716536 B = 6691.025348 C = 8045.884188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.031 3.969 3 H 0.045 0.955 4 C -0.503 4.503 5 H 0.073 0.927 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.901 3.099 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.531 3.469 13 O -0.527 6.527 14 N -0.608 5.608 15 C 0.116 3.884 16 C 0.456 3.544 17 O -0.502 6.502 18 O -0.519 6.519 19 C 0.154 3.846 20 C -0.080 4.080 21 C -0.072 4.072 22 C -0.125 4.125 23 C 0.065 3.935 24 F -0.132 7.132 25 C 0.062 3.938 26 F -0.132 7.132 27 C -0.117 4.117 28 H 0.093 0.907 29 H 0.014 0.986 30 H 0.038 0.962 31 H 0.262 0.738 32 H 0.111 0.889 33 H 0.141 0.859 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.411 0.925 -16.004 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.010 3.990 3 H 0.063 0.937 4 C -0.541 4.541 5 H 0.091 0.909 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.729 3.271 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.202 1.202 12 C 0.323 3.677 13 O -0.401 6.401 14 N -0.343 5.343 15 C -0.010 4.010 16 C 0.296 3.704 17 O -0.388 6.388 18 O -0.330 6.330 19 C 0.031 3.969 20 C -0.082 4.082 21 C -0.091 4.091 22 C -0.144 4.144 23 C 0.045 3.955 24 F -0.111 7.111 25 C 0.042 3.958 26 F -0.110 7.110 27 C -0.136 4.136 28 H 0.112 0.888 29 H 0.033 0.967 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.158 0.842 34 H 0.266 0.734 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.302 0.034 -15.798 15.965 hybrid contribution 0.412 0.133 0.511 0.670 sum -1.890 0.168 -15.287 15.404 Atomic orbital electron populations 1.21831 0.96030 1.01385 0.99912 1.18906 0.94209 0.96631 0.89293 0.93709 1.21024 1.31424 1.12794 0.88845 0.90898 1.24928 0.94981 0.95004 0.99112 1.69849 1.36882 1.22905 1.23813 0.86498 0.79290 0.79758 0.81573 1.21323 1.20108 1.20195 1.22129 0.75530 0.86351 0.83670 1.90516 1.43434 1.20858 1.85260 1.47999 1.67573 1.11741 1.06992 1.21142 0.92158 0.80338 1.07326 1.24393 0.91863 0.82007 0.72132 1.90744 1.24975 1.78621 1.44480 1.84529 1.43906 1.19009 1.85552 1.20253 0.93329 0.96248 0.87071 1.20314 0.97767 0.94624 0.95506 1.21262 0.96225 0.93822 0.97766 1.21147 0.94979 1.01679 0.96589 1.17727 0.88373 0.90249 0.99197 1.91515 1.53783 1.79829 1.85941 1.17596 0.93093 0.91066 0.94022 1.91518 1.71788 1.83200 1.64531 1.20957 0.93627 1.00783 0.98242 0.88811 0.96677 0.94248 0.92795 0.87078 0.84200 0.73410 0.89928 0.88055 0.83315 0.83628 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.46 37.16 0.31 -2.57 16 2 C 0.03 0.72 1.78 -92.92 -0.17 0.56 16 3 H 0.05 1.10 7.32 -51.93 -0.38 0.72 16 4 C -0.50 -13.75 8.36 -34.44 -0.29 -14.03 16 5 H 0.07 2.10 6.84 -52.49 -0.36 1.74 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -24.29 11.38 55.43 0.63 -23.66 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.53 11.25 6.89 -10.99 -0.08 11.17 16 13 O -0.53 -12.44 14.86 5.56 0.08 -12.36 16 14 N -0.61 -9.79 1.95 -176.43 -0.34 -10.14 16 15 C 0.12 1.55 5.42 -5.19 -0.03 1.52 16 16 C 0.46 6.46 8.39 36.00 0.30 6.76 16 17 O -0.50 -8.92 17.17 -18.75 -0.32 -9.24 16 18 O -0.52 -5.71 13.42 -39.25 -0.53 -6.23 16 19 C 0.15 2.04 5.56 -5.19 -0.03 2.01 16 20 C -0.08 -0.97 5.46 -104.62 -0.57 -1.54 16 21 C -0.07 -0.91 9.70 -39.58 -0.38 -1.29 16 22 C -0.13 -1.45 10.02 -39.52 -0.40 -1.85 16 23 C 0.06 0.81 7.31 -39.36 -0.29 0.52 16 24 F -0.13 -1.73 17.18 2.25 0.04 -1.70 16 25 C 0.06 0.76 7.31 -39.37 -0.29 0.47 16 26 F -0.13 -1.67 17.18 2.25 0.04 -1.63 16 27 C -0.12 -1.26 9.68 -39.52 -0.38 -1.64 16 28 H 0.09 2.22 6.24 -51.93 -0.32 1.90 16 29 H 0.01 0.26 6.15 -51.93 -0.32 -0.06 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.11 1.04 8.11 -51.93 -0.42 0.62 16 33 H 0.14 2.01 4.48 -51.93 -0.23 1.78 16 34 H 0.41 2.87 9.10 45.56 0.41 3.29 16 35 H 0.08 0.89 8.01 -51.93 -0.42 0.48 16 36 H 0.10 1.48 7.31 -51.93 -0.38 1.10 16 37 H 0.15 2.00 7.79 -52.49 -0.41 1.59 16 38 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 347.59 15.07 5.24 5.24 Total: -1.00 -32.67 347.59 -5.79 -38.46 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -3.23 Total: 3.29 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.37 Total: 1.63 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.29 Total: -33.80 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.77 Total: -27.83 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.08 Total: -3.32 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.67 -5.79 -38.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059263.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.563 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds