Wall clock time and date at job start Tue Mar 31 2020 15:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47357 * 2 1 4 4 C 1.50698 * 109.47159 * 120.00220 * 2 1 3 5 5 H 1.07996 * 120.00228 * 119.99897 * 4 2 1 6 6 C 1.37880 * 119.99536 * 300.00040 * 4 2 1 7 7 N 1.31508 * 120.00290 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99567 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46655 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.46920 * 299.99685 * 8 6 4 11 11 H 1.48491 * 109.47133 * 59.99666 * 8 6 4 12 12 C 1.50700 * 109.47011 * 239.99800 * 2 1 3 13 13 O 1.21276 * 120.00481 * 253.53557 * 12 2 1 14 14 N 1.34777 * 119.99930 * 73.53994 * 12 2 1 15 15 C 1.46501 * 119.99898 * 3.98725 * 14 12 2 16 16 C 1.50697 * 109.47503 * 95.20469 * 15 14 12 17 17 O 1.20829 * 119.99646 * 359.97438 * 16 15 14 18 18 O 1.34228 * 120.00140 * 180.02562 * 16 15 14 19 19 C 1.46503 * 120.00187 * 183.98740 * 14 12 2 20 20 C 1.50695 * 109.47148 * 89.99711 * 19 14 12 21 21 C 1.38257 * 119.96435 * 269.72518 * 20 19 14 22 22 C 1.38216 * 120.06970 * 179.77163 * 21 20 19 23 23 C 1.38418 * 119.99714 * 0.50216 * 22 21 20 24 24 F 1.35099 * 120.03222 * 179.72678 * 23 22 21 25 25 C 1.38645 * 119.93243 * 359.75304 * 23 22 21 26 26 F 1.35102 * 120.03868 * 179.97438 * 25 23 22 27 27 C 1.38220 * 119.96602 * 90.00409 * 20 19 14 28 28 H 1.08999 * 109.46805 * 305.56707 * 1 2 3 29 29 H 1.08998 * 109.46743 * 65.56570 * 1 2 3 30 30 H 1.09000 * 109.47298 * 185.56137 * 1 2 3 31 31 H 0.97004 * 119.99995 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.46932 * 215.20346 * 15 14 12 33 33 H 1.09000 * 109.47119 * 335.19795 * 15 14 12 34 34 H 0.96703 * 116.99680 * 179.97438 * 18 16 15 35 35 H 1.09001 * 109.46868 * 210.00076 * 19 14 12 36 36 H 1.08999 * 109.47020 * 329.99874 * 19 14 12 37 37 H 1.07997 * 119.96534 * 0.02562 * 21 20 19 38 38 H 1.07998 * 120.00316 * 180.25505 * 22 21 20 39 39 H 1.08002 * 119.99654 * 359.95225 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3225 -1.1196 4.0079 9 1 1.8278 -0.4192 5.2204 10 1 1.8280 -2.5199 4.0081 11 1 3.8074 -1.1191 4.0077 12 6 2.0323 -0.7105 -1.2304 13 8 2.5151 -1.8190 -1.1361 14 7 1.9451 -0.1139 -2.4358 15 6 1.4431 1.2585 -2.5393 16 6 2.6046 2.2186 -2.5538 17 8 3.7357 1.7995 -2.4844 18 8 2.3825 3.5394 -2.6428 19 6 2.3524 -0.8378 -3.6427 20 6 1.1688 -1.5813 -4.2058 21 6 0.9115 -2.8780 -3.8009 22 6 -0.1762 -3.5604 -4.3124 23 6 -1.0032 -2.9492 -5.2390 24 9 -2.0633 -3.6175 -5.7436 25 6 -0.7421 -1.6508 -5.6491 26 9 -1.5476 -1.0524 -6.5537 27 6 0.3449 -0.9684 -5.1310 28 1 -0.3633 0.5978 0.8359 29 1 -0.3633 0.4251 -0.9356 30 1 -0.3634 -1.0228 0.0996 31 1 0.7095 1.1618 3.4844 32 1 0.8702 1.3674 -3.4602 33 1 0.8022 1.4764 -1.6849 34 1 3.1590 4.1157 -2.6482 35 1 2.7226 -0.1293 -4.3837 36 1 3.1413 -1.5470 -3.3921 37 1 1.5587 -3.3568 -3.0810 38 1 -0.3785 -4.5718 -3.9922 39 1 0.5491 0.0433 -5.4493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059263.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:27 Heat of formation + Delta-G solvation = -204.792786 kcal Electronic energy + Delta-G solvation = -28308.421998 eV Core-core repulsion = 23851.644510 eV Total energy + Delta-G solvation = -4456.777488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.51629 -49.59732 -41.70132 -40.59419 -39.76314 -37.17105 -36.37327 -35.85794 -33.22952 -32.04055 -31.71663 -29.44824 -27.35270 -27.17256 -24.43822 -24.18050 -23.02316 -22.57201 -20.16025 -19.09974 -18.96275 -18.50623 -18.32318 -18.07541 -17.67355 -17.42813 -17.34578 -17.11749 -16.49256 -16.24866 -16.01760 -15.99797 -15.51953 -15.15803 -14.96269 -14.79716 -14.54074 -14.15283 -14.00922 -13.68855 -13.22692 -13.16925 -13.05684 -12.94696 -12.71034 -12.68191 -12.52688 -12.39881 -12.29424 -12.21262 -12.01474 -11.73860 -11.06921 -10.62684 -10.38045 -10.08864 -9.89448 -9.69006 -8.15483 -6.24415 -0.20798 -0.01603 1.23963 1.41785 1.42340 1.50215 1.61869 1.88735 2.36648 2.42238 2.56682 2.74654 3.15223 3.25407 3.49398 3.61147 3.82976 3.97525 4.06161 4.12508 4.32032 4.37110 4.47838 4.68347 4.70218 4.72417 4.80547 4.86333 4.90145 5.03187 5.05484 5.34323 5.44068 5.50165 5.66962 5.70698 5.74294 5.91665 6.14411 6.42286 6.81649 7.04499 7.35160 7.45434 8.90424 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011898 B = 0.004184 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.716536 B = 6691.025348 C = 8045.884188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.028 3.972 3 H 0.033 0.967 4 C -0.529 4.529 5 H 0.047 0.953 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.950 3.050 9 H -0.275 1.275 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.531 3.469 13 O -0.563 6.563 14 N -0.600 5.600 15 C 0.108 3.892 16 C 0.464 3.536 17 O -0.545 6.545 18 O -0.506 6.506 19 C 0.155 3.845 20 C -0.083 4.083 21 C -0.082 4.082 22 C -0.123 4.123 23 C 0.055 3.945 24 F -0.138 7.138 25 C 0.057 3.943 26 F -0.134 7.134 27 C -0.099 4.099 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.023 0.977 31 H 0.265 0.735 32 H 0.164 0.836 33 H 0.132 0.868 34 H 0.426 0.574 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.133 0.867 38 H 0.160 0.840 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 2.233 -17.462 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.007 3.993 3 H 0.051 0.949 4 C -0.567 4.567 5 H 0.066 0.934 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.776 3.224 9 H -0.200 1.200 10 H -0.201 1.201 11 H -0.204 1.204 12 C 0.322 3.678 13 O -0.440 6.440 14 N -0.333 5.333 15 C -0.016 4.016 16 C 0.306 3.694 17 O -0.435 6.435 18 O -0.319 6.319 19 C 0.034 3.966 20 C -0.084 4.084 21 C -0.101 4.101 22 C -0.142 4.142 23 C 0.035 3.965 24 F -0.117 7.117 25 C 0.037 3.963 26 F -0.113 7.113 27 C -0.118 4.118 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.181 0.819 33 H 0.150 0.850 34 H 0.288 0.712 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.151 0.849 38 H 0.178 0.822 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.051 1.403 -17.294 17.617 hybrid contribution 0.638 -0.198 0.907 1.127 sum -2.412 1.205 -16.387 16.607 Atomic orbital electron populations 1.21626 0.94586 1.00265 1.01261 1.18787 0.95360 0.95566 0.89607 0.94932 1.21213 1.31803 1.12632 0.91095 0.93443 1.25518 0.95183 0.95699 1.01208 1.69921 1.37045 1.23332 1.24367 0.85733 0.78568 0.78891 0.79184 1.20007 1.20127 1.20447 1.21598 0.75538 0.85836 0.84814 1.90497 1.45113 1.22275 1.86151 1.47765 1.66357 1.12877 1.06289 1.21455 0.92117 0.78489 1.09541 1.24399 0.91165 0.82894 0.70960 1.90748 1.26580 1.79465 1.46704 1.84477 1.44969 1.17844 1.84646 1.20383 0.93374 0.96551 0.86316 1.20169 0.97733 0.94342 0.96178 1.21237 0.96491 0.94519 0.97883 1.21229 0.94406 1.02320 0.96195 1.17908 0.88391 0.90685 0.99525 1.91499 1.54098 1.80049 1.86053 1.17720 0.93498 0.90972 0.94136 1.91516 1.71945 1.83177 1.64647 1.21146 0.92094 1.01871 0.96689 0.90988 0.92421 0.95750 0.92585 0.81900 0.85019 0.71195 0.86613 0.90010 0.84879 0.82222 0.80511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 8.46 71.98 0.61 -4.50 16 2 C 0.03 1.33 1.78 -12.29 -0.02 1.31 16 3 H 0.03 1.62 7.32 -2.39 -0.02 1.60 16 4 C -0.53 -29.72 8.36 25.60 0.21 -29.51 16 5 H 0.05 2.85 6.84 -2.91 -0.02 2.83 16 6 C 0.02 1.29 5.30 84.66 0.45 1.74 16 7 N -0.91 -49.39 11.38 21.45 0.24 -49.15 16 8 Si 0.95 44.17 29.54 68.60 2.03 46.20 16 9 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 C 0.53 22.61 6.89 87.66 0.60 23.21 16 13 O -0.56 -27.43 14.86 -3.02 -0.04 -27.48 16 14 N -0.60 -18.36 1.95 -830.51 -1.62 -19.98 16 15 C 0.11 2.55 5.42 85.63 0.46 3.02 16 16 C 0.46 11.97 8.39 71.23 0.60 12.57 16 17 O -0.55 -18.67 17.17 21.95 0.38 -18.29 16 18 O -0.51 -9.53 13.42 -51.40 -0.69 -10.22 16 19 C 0.16 3.82 5.56 85.63 0.48 4.29 16 20 C -0.08 -1.82 5.46 -19.87 -0.11 -1.93 16 21 C -0.08 -2.02 9.70 22.27 0.22 -1.80 16 22 C -0.12 -2.73 10.02 22.31 0.22 -2.50 16 23 C 0.06 1.29 7.31 22.41 0.16 1.45 16 24 F -0.14 -3.46 17.18 44.97 0.77 -2.69 16 25 C 0.06 1.22 7.31 22.41 0.16 1.39 16 26 F -0.13 -3.03 17.18 44.97 0.77 -2.25 16 27 C -0.10 -1.77 9.68 22.31 0.22 -1.56 16 28 H 0.07 3.40 6.24 -2.39 -0.01 3.38 16 29 H 0.06 1.91 6.15 -2.39 -0.01 1.89 16 30 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 32 H 0.16 2.14 8.11 -2.39 -0.02 2.12 16 33 H 0.13 3.42 4.48 -2.39 -0.01 3.41 16 34 H 0.43 4.76 9.10 -74.05 -0.67 4.09 16 35 H 0.12 2.09 8.01 -2.39 -0.02 2.07 16 36 H 0.08 2.38 7.31 -2.39 -0.02 2.36 16 37 H 0.13 3.70 7.79 -2.91 -0.02 3.68 16 38 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 39 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -72.70 347.59 6.56 -66.14 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.45 Total: 10.55 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 4.27 Total: 7.18 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -1.38 Total: -69.13 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -0.36 Total: -55.99 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 1.55 Total: -4.94 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -72.70 6.56 -66.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059263.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.651 kcal (2) G-P(sol) polarization free energy of solvation -72.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds