Wall clock time and date at job start Tue Mar 31 2020 15:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 120.00197 * 2 1 4 4 H 1.07994 * 120.00270 * 188.35359 * 3 2 1 5 5 C 1.38810 * 119.99589 * 8.34292 * 3 2 1 6 6 N 1.31621 * 120.00288 * 12.32092 * 5 3 2 7 7 Si 1.86805 * 120.00086 * 192.31826 * 5 3 2 8 8 H 1.48504 * 109.46746 * 90.00060 * 7 5 3 9 9 H 1.48497 * 109.47013 * 209.99976 * 7 5 3 10 10 H 1.48498 * 109.46900 * 330.00524 * 7 5 3 11 11 C 1.46507 * 120.00038 * 179.97438 * 2 1 3 12 12 C 1.50706 * 109.46975 * 273.59504 * 11 2 1 13 13 C 1.38334 * 119.88234 * 355.48285 * 12 11 2 14 14 C 1.38001 * 120.11448 * 180.02562 * 13 12 11 15 15 C 1.39319 * 119.88552 * 359.97438 * 14 13 12 16 16 C 1.48463 * 120.12161 * 179.72796 * 15 14 13 17 17 N 1.34041 * 126.67826 * 179.68808 * 16 15 14 18 18 N 1.28983 * 107.27396 * 179.89442 * 17 16 15 19 19 N 1.28743 * 108.94079 * 0.37776 * 18 17 16 20 20 H 0.96995 * 125.33778 * 179.78340 * 19 18 17 21 21 N 1.28872 * 109.31444 * 359.75526 * 19 18 17 22 22 C 1.39283 * 119.76292 * 0.02562 * 15 14 13 23 23 C 1.38052 * 119.88117 * 0.02562 * 22 15 14 24 24 C 1.50695 * 119.93860 * 179.97438 * 23 22 15 25 25 F 1.39894 * 109.47464 * 358.41380 * 24 23 22 26 26 F 1.39906 * 109.46787 * 118.40801 * 24 23 22 27 27 F 1.39900 * 109.47342 * 238.40508 * 24 23 22 28 28 H 1.09005 * 109.46580 * 174.60594 * 1 2 3 29 29 H 1.08993 * 109.47285 * 294.60372 * 1 2 3 30 30 H 1.09001 * 109.47292 * 54.61116 * 1 2 3 31 31 H 0.97001 * 120.00657 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.46839 * 153.60073 * 11 2 1 33 33 H 1.08992 * 109.47082 * 33.59809 * 11 2 1 34 34 H 1.08005 * 119.93868 * 359.97438 * 13 12 11 35 35 H 1.08010 * 120.05915 * 180.02562 * 14 13 12 36 36 H 1.07997 * 120.05689 * 179.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2211 1.1909 -0.1359 5 6 1.4666 2.3817 0.1744 6 7 0.2141 2.3712 0.5786 7 14 2.3251 4.0058 -0.1643 8 1 2.1234 4.3852 -1.5858 9 1 1.7565 5.0590 0.7146 10 1 3.7779 3.8641 0.1088 11 6 2.1975 -1.2688 0.0006 12 6 2.3715 -1.7477 1.4189 13 6 1.9474 -0.9556 2.4707 14 6 2.1049 -1.3892 3.7713 15 6 2.6917 -2.6273 4.0241 16 6 2.8691 -3.0963 5.4215 17 7 3.4084 -4.2592 5.8133 18 7 3.3791 -4.2798 7.1027 19 7 2.8406 -3.1896 7.5259 20 1 2.6978 -2.9592 8.4572 21 7 2.5217 -2.4525 6.5180 22 6 3.1169 -3.4208 2.9613 23 6 2.9555 -2.9770 1.6641 24 6 3.4157 -3.8342 0.5132 25 9 4.0005 -5.0047 1.0082 26 9 2.3187 -4.1647 -0.2898 27 9 4.3546 -3.1291 -0.2473 28 1 -0.3633 -1.0232 -0.0966 29 1 -0.3633 0.4278 0.9343 30 1 -0.3634 0.5951 -0.8378 31 1 -0.2632 3.2068 0.7008 32 1 3.1763 -1.1233 -0.4564 33 1 1.6379 -2.0116 -0.5677 34 1 1.4931 0.0042 2.2736 35 1 1.7731 -0.7702 4.5919 36 1 3.5727 -4.3811 3.1518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604708167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:09 Heat of formation + Delta-G solvation = 34.044786 kcal Electronic energy + Delta-G solvation = -27857.518027 eV Core-core repulsion = 23352.222511 eV Total energy + Delta-G solvation = -4505.295516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.100 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.94308 -47.47214 -47.35496 -44.52272 -39.36757 -35.92852 -34.44383 -33.74907 -31.87770 -31.59239 -30.05355 -26.85396 -25.96251 -25.68205 -24.60610 -23.64260 -22.20076 -21.26631 -20.43630 -19.33868 -18.23230 -18.14007 -17.88934 -17.21297 -16.85776 -15.78748 -15.17543 -15.04783 -14.48309 -14.43847 -14.31702 -13.99055 -13.90815 -13.62706 -13.56751 -13.51578 -13.44664 -13.09305 -12.77649 -12.46915 -12.38336 -11.84113 -11.68099 -11.42061 -11.28010 -11.10466 -11.04351 -10.83570 -10.76054 -10.63823 -10.33351 -10.08739 -9.85213 -8.95252 -8.68103 -8.30203 -7.07317 -5.73856 -3.22224 0.73741 1.11563 1.32069 2.13666 2.37601 2.89947 3.35410 3.42672 3.42861 3.62061 3.81176 3.94754 4.18233 4.32876 4.41940 4.68524 5.00114 5.09837 5.23941 5.33575 5.37979 5.48894 5.57342 5.74056 5.90020 6.16038 6.19388 6.22820 6.33501 6.35908 6.65355 6.68164 6.90979 7.18696 7.43442 7.68720 7.81977 8.06236 8.26353 9.15140 9.75812 10.18914 11.23343 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.010945 B = 0.004514 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.626734 B = 6200.942737 C = 8045.719995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.601 5.601 3 C -0.254 4.254 4 H 0.076 0.924 5 C 0.001 3.999 6 N -0.912 5.912 7 Si 0.907 3.093 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.161 3.839 12 C -0.019 4.019 13 C -0.091 4.091 14 C -0.053 4.053 15 C -0.047 4.047 16 C 0.232 3.768 17 N -0.271 5.271 18 N -0.054 5.054 19 N -0.230 5.230 20 H 0.474 0.526 21 N -0.294 5.294 22 C -0.037 4.037 23 C -0.201 4.201 24 C 0.513 3.487 25 F -0.181 7.181 26 F -0.176 7.176 27 F -0.174 7.174 28 H -0.002 1.002 29 H 0.063 0.937 30 H 0.029 0.971 31 H 0.252 0.748 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.170 0.830 35 H 0.135 0.865 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 -11.450 9.322 15.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.322 5.322 3 C -0.383 4.383 4 H 0.094 0.906 5 C -0.196 4.196 6 N -0.558 5.558 7 Si 0.737 3.263 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.033 3.967 12 C -0.023 4.023 13 C -0.108 4.108 14 C -0.073 4.073 15 C -0.051 4.051 16 C -0.047 4.047 17 N -0.144 5.144 18 N -0.049 5.049 19 N -0.076 5.076 20 H 0.328 0.672 21 N -0.145 5.145 22 C -0.058 4.058 23 C -0.203 4.203 24 C 0.459 3.541 25 F -0.163 7.163 26 F -0.157 7.157 27 F -0.156 7.156 28 H 0.016 0.984 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.187 0.813 35 H 0.153 0.847 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.831 -11.729 9.775 15.742 hybrid contribution 0.285 1.205 0.094 1.241 sum 4.117 -10.525 9.869 15.004 Atomic orbital electron populations 1.21156 0.81392 0.93832 1.02348 1.44051 1.02442 1.00122 1.85634 1.19323 0.92125 0.83447 1.43397 0.90640 1.24823 0.96318 0.97859 1.00591 1.70121 1.09975 1.25331 1.50388 0.86211 0.78731 0.83547 0.77830 1.21516 1.21775 1.20546 1.20267 0.97948 0.89335 0.89163 1.21631 0.89352 0.90050 1.01286 1.21565 0.97908 1.01699 0.89664 1.21471 0.94303 0.93284 0.98229 1.16995 1.06595 0.96457 0.85021 1.23650 0.97847 0.88896 0.94309 1.76080 1.18682 1.18664 1.01000 1.78877 1.12625 1.07165 1.06240 1.47716 1.38109 1.10495 1.11301 0.67186 1.74979 1.22600 1.22146 0.94823 1.20740 0.95807 0.99289 0.89956 1.19681 1.10462 0.97887 0.92317 1.18221 0.75118 0.78106 0.82635 1.93142 1.84929 1.50702 1.87499 1.93196 1.54071 1.92916 1.75539 1.93207 1.66223 1.78426 1.77714 0.98350 0.91896 0.95286 0.93711 0.90404 0.91472 0.81267 0.84720 0.84027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.62 8.58 59.85 0.51 4.13 16 2 N -0.60 -13.87 1.74 -182.50 -0.32 -14.19 16 3 C -0.25 -6.44 9.15 -15.06 -0.14 -6.58 16 4 H 0.08 1.89 7.81 -52.49 -0.41 1.48 16 5 C 0.00 0.03 5.32 -17.43 -0.09 -0.06 16 6 N -0.91 -24.49 9.85 55.49 0.55 -23.94 16 7 Si 0.91 20.92 29.57 -169.99 -5.03 15.90 16 8 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 C 0.16 3.13 4.75 -5.19 -0.02 3.11 16 12 C -0.02 -0.33 5.85 -104.56 -0.61 -0.94 16 13 C -0.09 -1.64 9.14 -39.63 -0.36 -2.00 16 14 C -0.05 -0.82 9.70 -39.27 -0.38 -1.20 16 15 C -0.05 -0.71 5.88 -104.89 -0.62 -1.32 16 16 C 0.23 3.28 7.94 -156.30 -1.24 2.04 16 17 N -0.27 -3.81 12.23 32.16 0.39 -3.42 16 18 N -0.05 -0.63 13.47 60.35 0.81 0.18 16 19 N -0.23 -2.11 7.90 60.35 0.48 -1.63 16 20 H 0.47 1.90 8.96 -340.37 -3.05 -1.15 16 21 N -0.29 -3.62 12.08 32.17 0.39 -3.23 16 22 C -0.04 -0.56 9.08 -39.26 -0.36 -0.91 16 23 C -0.20 -3.19 5.37 -104.67 -0.56 -3.75 16 24 C 0.51 7.71 2.88 36.00 0.10 7.82 16 25 F -0.18 -2.56 15.97 2.25 0.04 -2.52 16 26 F -0.18 -2.69 15.75 2.25 0.04 -2.65 16 27 F -0.17 -2.71 15.75 2.25 0.04 -2.67 16 28 H 0.00 -0.04 7.81 -51.93 -0.41 -0.45 16 29 H 0.06 1.56 6.41 -51.93 -0.33 1.23 16 30 H 0.03 0.72 7.64 -51.93 -0.40 0.33 16 31 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.08 1.51 6.97 -51.93 -0.36 1.15 16 33 H 0.07 1.24 6.58 -51.93 -0.34 0.90 16 34 H 0.17 3.61 6.05 -52.48 -0.32 3.29 16 35 H 0.13 1.92 7.88 -52.48 -0.41 1.51 16 36 H 0.14 1.94 6.98 -52.49 -0.37 1.57 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -28.46 320.68 -7.09 -35.55 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -5.53 Total: -2.53 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -3.77 Total: 0.33 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 2.30 Total: -46.23 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 0.11 Total: -7.85 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.46 -7.09 -35.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604708167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.590 kcal (2) G-P(sol) polarization free energy of solvation -28.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds