Wall clock time and date at job start Tue Mar 31 2020 15:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 120.00197 * 2 1 4 4 H 1.07994 * 120.00270 * 188.35359 * 3 2 1 5 5 C 1.38810 * 119.99589 * 8.34292 * 3 2 1 6 6 N 1.31621 * 120.00288 * 12.32092 * 5 3 2 7 7 Si 1.86805 * 120.00086 * 192.31826 * 5 3 2 8 8 H 1.48504 * 109.46746 * 90.00060 * 7 5 3 9 9 H 1.48497 * 109.47013 * 209.99976 * 7 5 3 10 10 H 1.48498 * 109.46900 * 330.00524 * 7 5 3 11 11 C 1.46507 * 120.00038 * 179.97438 * 2 1 3 12 12 C 1.50706 * 109.46975 * 273.59504 * 11 2 1 13 13 C 1.38334 * 119.88234 * 355.48285 * 12 11 2 14 14 C 1.38001 * 120.11448 * 180.02562 * 13 12 11 15 15 C 1.39319 * 119.88552 * 359.97438 * 14 13 12 16 16 C 1.48463 * 120.12161 * 179.72796 * 15 14 13 17 17 N 1.34041 * 126.67826 * 179.68808 * 16 15 14 18 18 N 1.28983 * 107.27396 * 179.89442 * 17 16 15 19 19 N 1.28743 * 108.94079 * 0.37776 * 18 17 16 20 20 H 0.96995 * 125.33778 * 179.78340 * 19 18 17 21 21 N 1.28872 * 109.31444 * 359.75526 * 19 18 17 22 22 C 1.39283 * 119.76292 * 0.02562 * 15 14 13 23 23 C 1.38052 * 119.88117 * 0.02562 * 22 15 14 24 24 C 1.50695 * 119.93860 * 179.97438 * 23 22 15 25 25 F 1.39894 * 109.47464 * 358.41380 * 24 23 22 26 26 F 1.39906 * 109.46787 * 118.40801 * 24 23 22 27 27 F 1.39900 * 109.47342 * 238.40508 * 24 23 22 28 28 H 1.09005 * 109.46580 * 174.60594 * 1 2 3 29 29 H 1.08993 * 109.47285 * 294.60372 * 1 2 3 30 30 H 1.09001 * 109.47292 * 54.61116 * 1 2 3 31 31 H 0.97001 * 120.00657 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.46839 * 153.60073 * 11 2 1 33 33 H 1.08992 * 109.47082 * 33.59809 * 11 2 1 34 34 H 1.08005 * 119.93868 * 359.97438 * 13 12 11 35 35 H 1.08010 * 120.05915 * 180.02562 * 14 13 12 36 36 H 1.07997 * 120.05689 * 179.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2211 1.1909 -0.1359 5 6 1.4666 2.3817 0.1744 6 7 0.2141 2.3712 0.5786 7 14 2.3251 4.0058 -0.1643 8 1 2.1234 4.3852 -1.5858 9 1 1.7565 5.0590 0.7146 10 1 3.7779 3.8641 0.1088 11 6 2.1975 -1.2688 0.0006 12 6 2.3715 -1.7477 1.4189 13 6 1.9474 -0.9556 2.4707 14 6 2.1049 -1.3892 3.7713 15 6 2.6917 -2.6273 4.0241 16 6 2.8691 -3.0963 5.4215 17 7 3.4084 -4.2592 5.8133 18 7 3.3791 -4.2798 7.1027 19 7 2.8406 -3.1896 7.5259 20 1 2.6978 -2.9592 8.4572 21 7 2.5217 -2.4525 6.5180 22 6 3.1169 -3.4208 2.9613 23 6 2.9555 -2.9770 1.6641 24 6 3.4157 -3.8342 0.5132 25 9 4.0005 -5.0047 1.0082 26 9 2.3187 -4.1647 -0.2898 27 9 4.3546 -3.1291 -0.2473 28 1 -0.3633 -1.0232 -0.0966 29 1 -0.3633 0.4278 0.9343 30 1 -0.3634 0.5951 -0.8378 31 1 -0.2632 3.2068 0.7008 32 1 3.1763 -1.1233 -0.4564 33 1 1.6379 -2.0116 -0.5677 34 1 1.4931 0.0042 2.2736 35 1 1.7731 -0.7702 4.5919 36 1 3.5727 -4.3811 3.1518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604708167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:08 Heat of formation + Delta-G solvation = 18.694075 kcal Electronic energy + Delta-G solvation = -27858.183684 eV Core-core repulsion = 23352.222511 eV Total energy + Delta-G solvation = -4505.961173 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.14734 -48.65286 -48.57782 -45.48398 -40.68694 -37.61131 -35.50071 -34.90306 -33.45871 -32.89470 -31.55561 -28.37156 -27.84112 -26.91980 -25.59142 -24.96967 -23.59748 -22.61775 -21.90186 -20.31218 -19.44129 -19.36537 -19.06126 -18.74042 -18.15815 -17.17335 -16.72897 -16.39382 -15.89316 -15.80433 -15.56346 -15.33120 -15.17962 -15.00445 -14.92256 -14.78439 -14.73801 -14.54843 -14.21866 -13.70438 -13.55803 -13.39620 -13.20532 -12.83598 -12.67632 -12.47592 -12.41468 -12.33751 -12.24310 -12.04802 -11.97907 -11.81905 -11.69389 -10.65145 -10.22190 -9.58456 -8.97520 -7.70701 -5.19977 -0.42274 0.01575 0.17150 1.21467 1.38837 1.50722 1.53358 1.59913 1.68718 2.52267 2.54525 2.55875 2.74268 3.06398 3.19615 3.35487 3.46359 3.55085 3.85831 3.92939 4.11030 4.23051 4.33916 4.49842 4.58280 4.60957 4.77297 4.88021 4.94858 5.05300 5.31644 5.48481 5.52376 5.61205 5.69993 5.78137 5.89208 6.33303 7.09078 7.19078 7.87491 8.26765 9.24745 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.010945 B = 0.004514 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.626734 B = 6200.942737 C = 8045.719995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.611 5.611 3 C -0.254 4.254 4 H 0.076 0.924 5 C -0.046 4.046 6 N -0.935 5.935 7 Si 0.961 3.039 8 H -0.292 1.292 9 H -0.296 1.296 10 H -0.272 1.272 11 C 0.164 3.836 12 C -0.031 4.031 13 C -0.103 4.103 14 C -0.044 4.044 15 C -0.038 4.038 16 C 0.216 3.784 17 N -0.290 5.290 18 N -0.052 5.052 19 N -0.198 5.198 20 H 0.495 0.505 21 N -0.294 5.294 22 C -0.030 4.030 23 C -0.196 4.196 24 C 0.518 3.482 25 F -0.173 7.173 26 F -0.177 7.177 27 F -0.177 7.177 28 H 0.022 0.978 29 H 0.042 0.958 30 H 0.001 0.999 31 H 0.246 0.754 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -12.722 10.717 17.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.333 5.333 3 C -0.383 4.383 4 H 0.093 0.907 5 C -0.241 4.241 6 N -0.583 5.583 7 Si 0.791 3.209 8 H -0.219 1.219 9 H -0.223 1.223 10 H -0.197 1.197 11 C 0.037 3.963 12 C -0.035 4.035 13 C -0.121 4.121 14 C -0.064 4.064 15 C -0.041 4.041 16 C -0.063 4.063 17 N -0.162 5.162 18 N -0.047 5.047 19 N -0.049 5.049 20 H 0.354 0.646 21 N -0.146 5.146 22 C -0.050 4.050 23 C -0.198 4.198 24 C 0.464 3.536 25 F -0.154 7.154 26 F -0.158 7.158 27 F -0.159 7.159 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.164 0.836 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.881 -13.039 11.190 17.862 hybrid contribution -0.001 1.496 -0.178 1.507 sum 4.880 -11.542 11.012 16.682 Atomic orbital electron populations 1.20844 0.81708 0.94481 1.00074 1.44136 1.02480 1.00904 1.85796 1.19534 0.92250 0.84437 1.42103 0.90653 1.25432 0.97016 1.00336 1.01293 1.70284 1.10990 1.25270 1.51732 0.85348 0.78189 0.80359 0.77033 1.21898 1.22300 1.19706 1.20284 0.97571 0.88008 0.90429 1.21244 0.91203 0.91145 0.99924 1.21217 0.99200 1.00716 0.91005 1.21460 0.93832 0.93721 0.97429 1.17024 1.05372 0.95825 0.85899 1.23458 0.99184 0.89485 0.94201 1.76067 1.19371 1.18847 1.01925 1.78832 1.12735 1.07638 1.05506 1.47777 1.35930 1.09253 1.11976 0.64550 1.74942 1.22298 1.22369 0.95015 1.20898 0.95071 0.99709 0.89360 1.19642 1.09965 0.97093 0.93135 1.18060 0.75042 0.78193 0.82281 1.93160 1.84755 1.50122 1.87361 1.93197 1.54159 1.92901 1.75536 1.93205 1.66315 1.78581 1.77766 0.95904 0.93946 0.98002 0.94422 0.90529 0.90523 0.84677 0.83560 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.18 8.58 127.77 1.10 9.28 16 2 N -0.61 -28.58 1.74 -731.30 -1.28 -29.86 16 3 C -0.25 -13.01 9.15 84.03 0.77 -12.25 16 4 H 0.08 3.80 7.81 -2.91 -0.02 3.77 16 5 C -0.05 -2.44 5.32 84.86 0.45 -1.99 16 6 N -0.93 -51.59 9.85 21.65 0.21 -51.38 16 7 Si 0.96 43.49 29.57 68.60 2.03 45.52 16 8 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 9 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 C 0.16 6.33 4.75 85.63 0.41 6.73 16 12 C -0.03 -1.09 5.85 -19.83 -0.12 -1.21 16 13 C -0.10 -3.75 9.14 22.24 0.20 -3.55 16 14 C -0.04 -1.35 9.70 22.47 0.22 -1.13 16 15 C -0.04 -1.07 5.88 -20.04 -0.12 -1.18 16 16 C 0.22 5.62 7.94 137.38 1.09 6.71 16 17 N -0.29 -7.43 12.23 -52.18 -0.64 -8.07 16 18 N -0.05 -1.08 13.47 37.02 0.50 -0.58 16 19 N -0.20 -3.03 7.90 37.02 0.29 -2.74 16 20 H 0.50 2.33 8.96 -347.54 -3.12 -0.79 16 21 N -0.29 -6.46 12.08 -52.13 -0.63 -7.09 16 22 C -0.03 -0.83 9.08 22.48 0.20 -0.63 16 23 C -0.20 -5.93 5.37 -19.90 -0.11 -6.04 16 24 C 0.52 14.69 2.88 71.23 0.20 14.89 16 25 F -0.17 -4.48 15.97 44.97 0.72 -3.76 16 26 F -0.18 -5.11 15.75 44.97 0.71 -4.40 16 27 F -0.18 -5.26 15.75 44.97 0.71 -4.55 16 28 H 0.02 0.93 7.81 -2.38 -0.02 0.91 16 29 H 0.04 2.18 6.41 -2.39 -0.02 2.16 16 30 H 0.00 0.07 7.64 -2.39 -0.02 0.05 16 31 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 32 H 0.08 2.94 6.97 -2.39 -0.02 2.93 16 33 H 0.08 2.77 6.58 -2.39 -0.02 2.76 16 34 H 0.14 5.96 6.05 -2.91 -0.02 5.95 16 35 H 0.15 4.02 7.88 -2.91 -0.02 4.00 16 36 H 0.16 3.88 6.98 -2.91 -0.02 3.86 16 Total: -1.00 -60.56 320.68 4.99 -55.57 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -1.93 Total: 1.69 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 4.30 Total: 9.64 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -1.54 Total: -99.71 kcal Atomic # 9 Polarization: -14.84 SS G_CDS: 2.13 Total: -12.71 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -60.56 4.99 -55.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604708167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.262 kcal (2) G-P(sol) polarization free energy of solvation -60.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds