Wall clock time and date at job start Tue Mar 31 2020 15:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 119.99883 * 2 1 4 4 C 1.50705 * 109.46971 * 270.00187 * 3 2 1 5 5 H 1.07999 * 119.99735 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99881 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99666 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00158 * 359.97438 * 6 4 3 9 9 H 1.48493 * 109.47262 * 90.00206 * 8 6 4 10 10 H 1.48503 * 109.47043 * 210.00491 * 8 6 4 11 11 H 1.48496 * 109.47013 * 330.00184 * 8 6 4 12 12 C 1.39690 * 119.99950 * 179.97438 * 2 1 3 13 13 C 1.39004 * 120.01332 * 179.97438 * 12 2 1 14 14 C 1.38163 * 120.15901 * 179.97438 * 13 12 2 15 15 C 1.38094 * 120.19727 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.98426 * 179.97438 * 15 14 13 17 17 F 1.39905 * 109.47157 * 0.02562 * 16 15 14 18 18 F 1.39900 * 109.47159 * 240.00611 * 16 15 14 19 19 F 1.39897 * 109.47274 * 120.00302 * 16 15 14 20 20 C 1.39320 * 120.03248 * 0.25870 * 15 14 13 21 21 C 1.48463 * 120.08223 * 179.71845 * 20 15 14 22 22 N 1.34051 * 126.67296 * 359.68621 * 21 20 15 23 23 N 1.28987 * 107.26959 * 179.86810 * 22 21 20 24 24 N 1.28734 * 108.94249 * 0.40527 * 23 22 21 25 25 H 0.96996 * 125.34392 * 179.74688 * 24 23 22 26 26 N 1.28872 * 109.31531 * 359.73976 * 24 23 22 27 27 C 1.38692 * 120.02013 * 359.97438 * 12 2 1 28 28 H 1.09006 * 109.46853 * 269.99746 * 1 2 3 29 29 H 1.08993 * 109.47447 * 30.00058 * 1 2 3 30 30 H 1.09001 * 109.47380 * 150.00615 * 1 2 3 31 31 H 1.09001 * 109.47547 * 30.00071 * 3 2 1 32 32 H 1.08996 * 109.47404 * 150.00054 * 3 2 1 33 33 H 0.97003 * 120.00325 * 179.97438 * 7 6 4 34 34 H 1.07998 * 119.92211 * 359.95941 * 13 12 2 35 35 H 1.07997 * 119.89883 * 179.97438 * 14 13 12 36 36 H 1.08007 * 120.09419 * 359.97438 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0957 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.3454 3.2573 -2.9127 8 14 3.7337 3.9287 -0.2530 9 1 5.1068 3.5070 0.1235 10 1 3.7496 5.3554 -0.6649 11 1 2.8273 3.7596 0.9109 12 6 2.1634 -1.2098 0.0005 13 6 3.5535 -1.2101 0.0000 14 6 4.2473 -2.4049 0.0011 15 6 3.5640 -3.6049 0.0032 16 6 4.3257 -4.9053 0.0038 17 9 5.6995 -4.6411 0.0025 18 9 3.9911 -5.6422 -1.1374 19 9 3.9936 -5.6398 1.1472 20 6 2.1708 -3.6140 -0.0011 21 6 1.4351 -4.9035 -0.0052 22 7 1.9722 -6.1317 -0.0110 23 7 0.9971 -6.9761 -0.0100 24 7 -0.1158 -6.3292 -0.0124 25 1 -0.9985 -6.7313 -0.0158 26 7 0.1268 -5.0635 -0.0095 27 6 1.4704 -2.4111 0.0016 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5137 31 1 1.6084 2.0284 0.5138 32 1 3.1498 1.1385 0.5138 33 1 3.8222 4.0832 -3.0901 34 1 4.0924 -0.2742 -0.0015 35 1 5.3273 -2.4002 0.0002 36 1 0.3903 -2.4132 0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604736317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:00 Heat of formation + Delta-G solvation = 34.221169 kcal Electronic energy + Delta-G solvation = -28000.032134 eV Core-core repulsion = 23494.744266 eV Total energy + Delta-G solvation = -4505.287868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.62560 -47.20081 -47.00312 -44.47527 -39.48969 -36.36770 -34.35016 -33.51690 -32.81167 -30.76826 -30.57011 -28.61504 -26.37978 -25.10397 -24.52197 -23.69830 -22.27860 -21.54700 -20.29505 -19.12220 -18.01303 -17.93280 -17.79303 -17.18430 -17.07805 -16.56027 -15.48309 -15.14512 -14.52483 -14.30638 -14.09127 -14.01720 -13.79525 -13.66185 -13.54658 -13.32632 -13.21873 -13.11211 -12.99316 -12.62835 -12.51288 -12.32671 -11.91190 -11.72792 -11.37132 -11.29311 -11.23463 -11.06685 -10.97221 -10.78631 -10.50238 -10.37894 -9.77281 -9.35624 -8.77793 -8.62479 -6.88639 -6.25864 -4.28142 0.73243 1.20673 1.56762 2.17238 2.48108 3.13883 3.16379 3.21036 3.23096 3.52778 3.76536 3.94051 4.18644 4.21886 4.27180 4.54401 4.95764 5.03865 5.09213 5.17847 5.40634 5.48871 5.57934 5.66032 5.76966 5.84839 5.96456 6.12725 6.27239 6.29361 6.40201 6.47727 6.64567 6.66455 6.92083 7.37089 7.69780 7.92997 8.09869 8.33182 8.80402 9.32320 10.86811 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.003819 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.400496 B = 7329.994570 C = 8390.058644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.596 5.596 3 C 0.216 3.784 4 C -0.543 4.543 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.871 3.129 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.265 1.265 12 C 0.263 3.737 13 C -0.171 4.171 14 C -0.027 4.027 15 C -0.233 4.233 16 C 0.520 3.480 17 F -0.187 7.187 18 F -0.173 7.173 19 F -0.175 7.175 20 C 0.072 3.928 21 C 0.214 3.786 22 N -0.255 5.255 23 N -0.051 5.051 24 N -0.232 5.232 25 H 0.474 0.526 26 N -0.286 5.286 27 C -0.177 4.177 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.267 0.733 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.272 -14.920 7.972 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.298 5.298 3 C 0.095 3.905 4 C -0.581 4.581 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.698 3.302 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.153 3.847 13 C -0.194 4.194 14 C -0.046 4.046 15 C -0.239 4.239 16 C 0.466 3.534 17 F -0.169 7.169 18 F -0.154 7.154 19 F -0.156 7.156 20 C 0.067 3.933 21 C -0.065 4.065 22 N -0.128 5.128 23 N -0.046 5.046 24 N -0.077 5.077 25 H 0.328 0.672 26 N -0.137 5.137 27 C -0.202 4.202 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.379 -15.216 7.849 17.946 hybrid contribution -0.139 0.705 0.436 0.841 sum -5.518 -14.510 8.286 17.597 Atomic orbital electron populations 1.21650 0.80212 1.02999 1.00419 1.46940 1.05032 1.03836 1.74017 1.19812 0.92109 0.80227 0.98306 1.21404 1.37717 1.07689 0.91285 0.90353 1.24883 0.95226 0.97153 0.95504 1.69887 1.40655 1.23451 1.18704 0.86931 0.80025 0.80374 0.82903 1.19710 1.20856 1.18981 1.17862 0.91489 0.85913 0.89438 1.21001 0.92446 0.98940 1.06994 1.20605 1.00172 0.89913 0.93926 1.19442 0.92495 0.92705 1.19266 1.17968 0.76448 0.84788 0.74182 1.93116 1.33365 1.94030 1.96368 1.93189 1.92011 1.79242 1.50974 1.93176 1.92116 1.79429 1.50880 1.16388 0.89833 0.86731 1.00304 1.23709 0.86548 0.94381 1.01891 1.76322 1.21620 0.98168 1.16698 1.78901 0.88362 1.22506 1.14816 1.47722 1.11441 1.02102 1.46444 0.67223 1.74906 1.17844 0.99402 1.21552 1.20494 1.00062 0.89174 1.10499 0.93732 0.90575 0.91941 0.94806 0.95077 0.92299 0.83614 0.84350 0.84423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.19 59.85 0.61 1.95 16 2 N -0.60 -10.87 2.99 -181.04 -0.54 -11.41 16 3 C 0.22 4.53 3.98 -5.19 -0.02 4.51 16 4 C -0.54 -13.87 9.94 -34.44 -0.34 -14.21 16 5 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 6 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 7 N -0.89 -25.51 13.96 55.43 0.77 -24.73 16 8 Si 0.87 19.32 27.47 -169.99 -4.67 14.65 16 9 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.27 -5.54 6.54 56.52 0.37 -5.17 16 12 C 0.26 4.58 6.55 -83.83 -0.55 4.03 16 13 C -0.17 -2.93 9.20 -39.33 -0.36 -3.29 16 14 C -0.03 -0.42 9.41 -39.66 -0.37 -0.79 16 15 C -0.23 -3.73 5.40 -104.27 -0.56 -4.30 16 16 C 0.52 8.26 2.78 36.01 0.10 8.36 16 17 F -0.19 -2.82 15.97 2.25 0.04 -2.79 16 18 F -0.17 -2.89 14.91 2.25 0.03 -2.86 16 19 F -0.17 -2.83 14.99 2.25 0.03 -2.79 16 20 C 0.07 1.14 5.84 -104.92 -0.61 0.53 16 21 C 0.21 3.26 7.50 -156.30 -1.17 2.08 16 22 N -0.25 -3.94 7.31 32.16 0.24 -3.71 16 23 N -0.05 -0.64 13.47 60.35 0.81 0.17 16 24 N -0.23 -2.24 7.90 60.35 0.48 -1.77 16 25 H 0.47 2.04 8.96 -340.37 -3.05 -1.01 16 26 N -0.29 -3.63 12.08 32.17 0.39 -3.24 16 27 C -0.18 -2.78 8.85 -39.06 -0.35 -3.13 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 30 H 0.06 0.82 6.20 -51.93 -0.32 0.50 16 31 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 32 H 0.03 0.64 5.62 -51.93 -0.29 0.35 16 33 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.15 2.61 6.13 -52.49 -0.32 2.28 16 35 H 0.14 1.87 7.14 -52.49 -0.38 1.49 16 36 H 0.14 1.94 5.96 -52.48 -0.31 1.63 16 LS Contribution 316.63 15.07 4.77 4.77 Total: -1.00 -30.70 316.63 -6.85 -37.56 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.48 Total: -1.50 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -3.73 Total: -2.35 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 2.15 Total: -44.69 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 0.10 Total: -8.44 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.67 Total: 14.65 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.70 -6.85 -37.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604736317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.777 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds