Wall clock time and date at job start Tue Mar 31 2020 15:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 119.99883 * 2 1 4 4 C 1.50705 * 109.46971 * 270.00187 * 3 2 1 5 5 H 1.07999 * 119.99735 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99881 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99666 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00158 * 359.97438 * 6 4 3 9 9 H 1.48493 * 109.47262 * 90.00206 * 8 6 4 10 10 H 1.48503 * 109.47043 * 210.00491 * 8 6 4 11 11 H 1.48496 * 109.47013 * 330.00184 * 8 6 4 12 12 C 1.39690 * 119.99950 * 179.97438 * 2 1 3 13 13 C 1.39004 * 120.01332 * 179.97438 * 12 2 1 14 14 C 1.38163 * 120.15901 * 179.97438 * 13 12 2 15 15 C 1.38094 * 120.19727 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.98426 * 179.97438 * 15 14 13 17 17 F 1.39905 * 109.47157 * 0.02562 * 16 15 14 18 18 F 1.39900 * 109.47159 * 240.00611 * 16 15 14 19 19 F 1.39897 * 109.47274 * 120.00302 * 16 15 14 20 20 C 1.39320 * 120.03248 * 0.25870 * 15 14 13 21 21 C 1.48463 * 120.08223 * 179.71845 * 20 15 14 22 22 N 1.34051 * 126.67296 * 359.68621 * 21 20 15 23 23 N 1.28987 * 107.26959 * 179.86810 * 22 21 20 24 24 N 1.28734 * 108.94249 * 0.40527 * 23 22 21 25 25 H 0.96996 * 125.34392 * 179.74688 * 24 23 22 26 26 N 1.28872 * 109.31531 * 359.73976 * 24 23 22 27 27 C 1.38692 * 120.02013 * 359.97438 * 12 2 1 28 28 H 1.09006 * 109.46853 * 269.99746 * 1 2 3 29 29 H 1.08993 * 109.47447 * 30.00058 * 1 2 3 30 30 H 1.09001 * 109.47380 * 150.00615 * 1 2 3 31 31 H 1.09001 * 109.47547 * 30.00071 * 3 2 1 32 32 H 1.08996 * 109.47404 * 150.00054 * 3 2 1 33 33 H 0.97003 * 120.00325 * 179.97438 * 7 6 4 34 34 H 1.07998 * 119.92211 * 359.95941 * 13 12 2 35 35 H 1.07997 * 119.89883 * 179.97438 * 14 13 12 36 36 H 1.08007 * 120.09419 * 359.97438 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0957 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.3454 3.2573 -2.9127 8 14 3.7337 3.9287 -0.2530 9 1 5.1068 3.5070 0.1235 10 1 3.7496 5.3554 -0.6649 11 1 2.8273 3.7596 0.9109 12 6 2.1634 -1.2098 0.0005 13 6 3.5535 -1.2101 0.0000 14 6 4.2473 -2.4049 0.0011 15 6 3.5640 -3.6049 0.0032 16 6 4.3257 -4.9053 0.0038 17 9 5.6995 -4.6411 0.0025 18 9 3.9911 -5.6422 -1.1374 19 9 3.9936 -5.6398 1.1472 20 6 2.1708 -3.6140 -0.0011 21 6 1.4351 -4.9035 -0.0052 22 7 1.9722 -6.1317 -0.0110 23 7 0.9971 -6.9761 -0.0100 24 7 -0.1158 -6.3292 -0.0124 25 1 -0.9985 -6.7313 -0.0158 26 7 0.1268 -5.0635 -0.0095 27 6 1.4704 -2.4111 0.0016 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5137 31 1 1.6084 2.0284 0.5138 32 1 3.1498 1.1385 0.5138 33 1 3.8222 4.0832 -3.0901 34 1 4.0924 -0.2742 -0.0015 35 1 5.3273 -2.4002 0.0002 36 1 0.3903 -2.4132 0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604736317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:00 Heat of formation + Delta-G solvation = 15.158822 kcal Electronic energy + Delta-G solvation = -28000.858740 eV Core-core repulsion = 23494.744266 eV Total energy + Delta-G solvation = -4506.114473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.88044 -48.44375 -48.27647 -45.49418 -40.77466 -37.72527 -35.41046 -34.74421 -34.58915 -32.16769 -31.77271 -30.19290 -27.66744 -26.40660 -25.66542 -24.92723 -23.81586 -22.76437 -21.57559 -20.20486 -19.24754 -19.19558 -19.06202 -18.98431 -18.18860 -17.90195 -16.88787 -16.38866 -16.20204 -15.52985 -15.33714 -15.27729 -15.12013 -14.91858 -14.79980 -14.76199 -14.48825 -14.41005 -14.27744 -14.20381 -13.80667 -13.60750 -13.27445 -13.11806 -12.78993 -12.48196 -12.45485 -12.38434 -12.18652 -12.14597 -11.91267 -11.89479 -11.65932 -10.82999 -10.76230 -9.84468 -8.30535 -8.24007 -6.35288 -0.42616 0.15959 0.30429 1.30077 1.38563 1.41539 1.42194 1.51497 1.91424 2.25773 2.35401 2.60400 2.66544 3.01186 3.06111 3.10043 3.30912 3.69948 3.89255 3.99352 4.24253 4.29844 4.39799 4.41429 4.55943 4.68313 4.70798 4.89786 4.94257 4.97964 5.05810 5.28115 5.29901 5.47544 5.60817 5.62579 6.07570 6.48511 6.59758 6.72040 7.06615 7.30121 8.88158 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.003819 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.400496 B = 7329.994570 C = 8390.058644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.609 5.609 3 C 0.224 3.776 4 C -0.538 4.538 5 H 0.029 0.971 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.942 3.058 9 H -0.263 1.263 10 H -0.288 1.288 11 H -0.238 1.238 12 C 0.248 3.752 13 C -0.188 4.188 14 C -0.020 4.020 15 C -0.239 4.239 16 C 0.524 3.476 17 F -0.183 7.183 18 F -0.178 7.178 19 F -0.176 7.176 20 C 0.069 3.931 21 C 0.195 3.805 22 N -0.282 5.282 23 N -0.052 5.052 24 N -0.197 5.197 25 H 0.496 0.504 26 N -0.278 5.278 27 C -0.168 4.168 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.267 0.733 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 -15.785 9.988 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.312 5.312 3 C 0.102 3.898 4 C -0.577 4.577 5 H 0.048 0.952 6 C -0.183 4.183 7 N -0.585 5.585 8 Si 0.765 3.235 9 H -0.188 1.188 10 H -0.213 1.213 11 H -0.162 1.162 12 C 0.140 3.860 13 C -0.211 4.211 14 C -0.039 4.039 15 C -0.245 4.245 16 C 0.470 3.530 17 F -0.164 7.164 18 F -0.160 7.160 19 F -0.157 7.157 20 C 0.065 3.935 21 C -0.085 4.085 22 N -0.154 5.154 23 N -0.047 5.047 24 N -0.048 5.048 25 H 0.355 0.645 26 N -0.131 5.131 27 C -0.193 4.193 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.276 -16.144 9.886 19.944 hybrid contribution 0.016 0.778 -0.268 0.823 sum -6.260 -15.366 9.618 19.179 Atomic orbital electron populations 1.21824 0.78347 1.03173 1.02180 1.46900 1.06211 1.03102 1.74986 1.19550 0.93223 0.81873 0.95140 1.21622 1.36623 1.06849 0.92604 0.95237 1.25819 0.95497 0.98749 0.98217 1.70061 1.42571 1.24362 1.21533 0.85801 0.80146 0.77672 0.79914 1.18789 1.21350 1.16156 1.18045 0.91724 0.86238 0.90029 1.21009 0.92718 0.99059 1.08334 1.20746 1.01053 0.89261 0.92873 1.19568 0.92863 0.92820 1.19229 1.17900 0.76568 0.84607 0.73960 1.93122 1.33010 1.93980 1.96336 1.93175 1.92105 1.79381 1.51306 1.93170 1.92167 1.79461 1.50906 1.16530 0.89982 0.87376 0.99607 1.23602 0.87259 0.94123 1.03474 1.76304 1.22827 0.98470 1.17816 1.78844 0.88720 1.22153 1.15015 1.47785 1.12088 1.01207 1.43711 0.64451 1.74860 1.16762 1.00469 1.20966 1.20570 1.00768 0.88376 1.09609 0.91019 0.91691 0.90554 0.93698 0.94030 0.92387 0.84720 0.82594 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.42 10.19 127.77 1.30 3.72 16 2 N -0.61 -21.62 2.99 -726.68 -2.17 -23.79 16 3 C 0.22 9.19 3.98 85.64 0.34 9.54 16 4 C -0.54 -28.10 9.94 25.60 0.25 -27.84 16 5 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 6 C 0.02 0.84 5.47 84.66 0.46 1.30 16 7 N -0.95 -56.02 13.96 21.45 0.30 -55.72 16 8 Si 0.94 39.48 27.47 68.60 1.88 41.36 16 9 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 10 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.24 -8.89 6.54 99.48 0.65 -8.24 16 12 C 0.25 8.45 6.55 38.18 0.25 8.70 16 13 C -0.19 -6.39 9.20 22.44 0.21 -6.18 16 14 C -0.02 -0.62 9.41 22.22 0.21 -0.41 16 15 C -0.24 -7.42 5.40 -19.64 -0.11 -7.52 16 16 C 0.52 16.09 2.78 71.24 0.20 16.28 16 17 F -0.18 -5.30 15.97 44.97 0.72 -4.58 16 18 F -0.18 -5.82 14.91 44.97 0.67 -5.15 16 19 F -0.18 -5.49 14.99 44.97 0.67 -4.82 16 20 C 0.07 2.12 5.84 -20.06 -0.12 2.00 16 21 C 0.20 5.59 7.50 137.38 1.03 6.62 16 22 N -0.28 -8.28 7.31 -52.18 -0.38 -8.66 16 23 N -0.05 -1.22 13.47 37.02 0.50 -0.72 16 24 N -0.20 -3.27 7.90 37.02 0.29 -2.97 16 25 H 0.50 2.67 8.96 -347.54 -3.12 -0.45 16 26 N -0.28 -6.36 12.08 -52.13 -0.63 -6.99 16 27 C -0.17 -5.04 8.85 22.61 0.20 -4.84 16 28 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.06 1.93 8.07 -2.39 -0.02 1.91 16 30 H 0.08 1.87 6.20 -2.39 -0.01 1.86 16 31 H 0.05 1.76 7.13 -2.39 -0.02 1.74 16 32 H 0.04 1.64 5.62 -2.39 -0.01 1.63 16 33 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.14 4.83 6.13 -2.91 -0.02 4.81 16 35 H 0.16 4.05 7.14 -2.91 -0.02 4.03 16 36 H 0.15 4.00 5.96 -2.91 -0.02 3.98 16 Total: -1.00 -67.50 316.63 4.10 -63.41 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -1.98 Total: 7.27 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 4.23 Total: 1.37 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -2.09 Total: -98.86 kcal Atomic # 9 Polarization: -16.61 SS G_CDS: 2.06 Total: -14.55 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.88 Total: 41.36 kcal Total: -67.50 4.10 -63.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604736317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.565 kcal (2) G-P(sol) polarization free energy of solvation -67.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds