Wall clock time and date at job start Tue Mar 31 2020 14:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47279 * 281.26323 * 3 2 1 5 5 C 1.37098 * 119.99807 * 263.92912 * 4 3 2 6 6 H 1.07998 * 119.99343 * 199.75030 * 5 4 3 7 7 C 1.38949 * 120.00022 * 19.75297 * 5 4 3 8 8 N 1.31413 * 120.00188 * 21.74468 * 7 5 4 9 9 Si 1.86801 * 119.99673 * 201.74261 * 7 5 4 10 10 H 1.48499 * 109.47104 * 60.00297 * 9 7 5 11 11 H 1.48506 * 109.46858 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47263 * 299.99951 * 9 7 5 13 13 C 1.34777 * 119.99805 * 83.92819 * 4 3 2 14 14 O 1.21289 * 119.99894 * 180.02562 * 13 4 3 15 15 C 1.50697 * 120.00084 * 0.02562 * 13 4 3 16 16 O 1.42894 * 109.47188 * 179.97438 * 15 13 4 17 17 C 1.35841 * 117.00157 * 179.97438 * 16 15 13 18 18 C 1.38591 * 120.11994 * 0.02562 * 17 16 15 19 19 C 1.38173 * 120.06614 * 179.97438 * 18 17 16 20 20 C 1.38383 * 120.29026 * 0.02562 * 19 18 17 21 21 C 1.38007 * 120.24043 * 0.02562 * 20 19 18 22 22 C 1.39273 * 119.93344 * 359.97177 * 21 20 19 23 23 C 1.48403 * 120.14427 * 180.02562 * 22 21 20 24 24 N 1.34067 * 126.67482 * 179.66129 * 23 22 21 25 25 N 1.28982 * 107.26506 * 179.83673 * 24 23 22 26 26 N 1.28725 * 108.95092 * 0.43906 * 25 24 23 27 27 H 0.96994 * 125.34249 * 179.75624 * 26 25 24 28 28 N 1.28879 * 109.32223 * 359.72225 * 26 25 24 29 29 H 4.40646 * 5.51442 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.46958 * 161.26583 * 3 2 1 31 31 H 1.08995 * 109.47574 * 41.26571 * 3 2 1 32 32 H 0.97000 * 119.99645 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46950 * 60.00063 * 15 13 4 34 34 H 1.09003 * 109.47067 * 299.99972 * 15 13 4 35 35 H 1.08009 * 119.96737 * 359.97412 * 18 17 16 36 36 H 1.07999 * 119.85491 * 179.74668 * 19 18 17 37 37 H 1.08001 * 119.88133 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.03482 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.2689 1.3547 5 6 3.4808 0.7711 2.1780 6 1 4.1241 0.5959 3.0276 7 6 3.0043 2.0505 1.9193 8 7 1.9232 2.2140 1.1903 9 14 3.9003 3.5378 2.6080 10 1 5.2916 3.5615 2.0892 11 1 3.1952 4.7768 2.1921 12 1 3.9261 3.4575 4.0906 13 6 3.2432 -1.5393 1.7914 14 8 3.6472 -1.7625 2.9130 15 6 2.8629 -2.6825 0.8861 16 8 3.0652 -3.9201 1.5711 17 6 2.7674 -5.0575 0.8906 18 6 2.2912 -4.9859 -0.4089 19 6 1.9892 -6.1435 -1.1002 20 6 2.1594 -7.3791 -0.5007 21 6 2.6318 -7.4646 0.7932 22 6 2.9393 -6.3040 1.4989 23 6 3.4482 -6.3906 2.8903 24 7 3.7891 -5.3649 3.6835 25 7 4.1765 -5.8632 4.8083 26 7 4.1002 -7.1466 4.7454 27 1 4.3375 -7.7585 5.4596 28 7 3.6585 -7.4912 3.5847 29 1 -1.0500 0.0002 0.0001 30 1 3.0088 0.9741 -0.3301 31 1 3.0096 -0.7716 -0.6777 32 1 1.5908 3.1072 1.0095 33 1 3.4830 -2.6581 -0.0100 34 1 1.8139 -2.5897 0.6048 35 1 2.1560 -4.0243 -0.8818 36 1 1.6144 -6.0836 -2.1113 37 1 1.9217 -8.2797 -1.0473 38 1 2.7630 -8.4306 1.2580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609020963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:35 Heat of formation + Delta-G solvation = 164.519410 kcal Electronic energy + Delta-G solvation = -26859.331473 eV Core-core repulsion = 22901.550501 eV Total energy + Delta-G solvation = -3957.780972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.18298 -40.13602 -38.58242 -37.05484 -35.05493 -34.17625 -33.43685 -32.17846 -31.24936 -30.60163 -30.12128 -27.99406 -26.36683 -24.75854 -24.34170 -24.11697 -22.00667 -21.54798 -19.28099 -19.13083 -18.02666 -17.84511 -16.90520 -16.65931 -16.31465 -16.04260 -15.70406 -15.47773 -14.66220 -14.34083 -14.12035 -14.04628 -13.91627 -13.55024 -13.04947 -12.95066 -12.35915 -12.17066 -12.10079 -11.86922 -11.62845 -11.57572 -11.10301 -11.09024 -10.97965 -10.82104 -10.79631 -10.71862 -10.51827 -10.31106 -9.40683 -9.25138 -8.94508 -8.87914 -8.36896 -8.06471 -7.85564 -6.32634 -3.86555 0.76556 1.37313 1.45102 2.41142 2.55097 3.14324 3.19735 3.26687 3.34769 3.67886 3.77908 3.86368 3.89830 3.99389 4.20698 4.37321 4.78548 4.87586 5.00375 5.05482 5.10024 5.30928 5.38609 5.42470 5.51008 5.54954 5.59438 5.72347 5.78927 5.85697 6.20928 6.24295 6.26940 6.39613 6.55539 6.65707 6.67862 6.97324 7.51759 7.57934 8.05151 8.42999 8.44817 8.76422 9.13539 9.32447 9.88394 10.68256 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014679 B = 0.003648 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.021579 B = 7672.678433 C = 9263.298292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.120 4.120 3 C 0.230 3.770 4 N -0.439 5.439 5 C -0.313 4.313 6 H 0.105 0.895 7 C 0.033 3.967 8 N -0.862 5.862 9 Si 0.922 3.078 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.454 3.546 14 O -0.543 6.543 15 C 0.044 3.956 16 O -0.256 6.256 17 C 0.178 3.822 18 C -0.217 4.217 19 C -0.056 4.056 20 C -0.172 4.172 21 C -0.042 4.042 22 C -0.059 4.059 23 C 0.221 3.779 24 N -0.219 5.219 25 N -0.054 5.054 26 N -0.240 5.240 27 H 0.470 0.530 28 N -0.308 5.308 29 H 0.199 0.801 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.269 0.731 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 -17.446 -5.727 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.122 4.122 3 C 0.107 3.893 4 N -0.160 5.160 5 C -0.440 4.440 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.499 5.499 9 Si 0.748 3.252 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.240 3.760 14 O -0.423 6.423 15 C -0.035 4.035 16 O -0.165 6.165 17 C 0.128 3.872 18 C -0.236 4.236 19 C -0.075 4.075 20 C -0.190 4.190 21 C -0.062 4.062 22 C -0.064 4.064 23 C -0.058 4.058 24 N -0.092 5.092 25 N -0.050 5.050 26 N -0.084 5.084 27 H 0.323 0.677 28 N -0.161 5.161 29 H 0.216 0.784 30 H 0.128 0.872 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.261 -17.066 -4.408 17.629 hybrid contribution -0.220 0.479 0.057 0.530 sum 0.041 -16.588 -4.351 17.149 Atomic orbital electron populations 1.24288 0.95379 1.05413 1.02146 1.23157 0.94355 0.96318 0.98331 1.18251 0.84356 1.02032 0.84658 1.43582 1.56910 1.03969 1.11553 1.19600 1.28224 0.85044 1.11164 0.87747 1.25290 0.94955 0.99227 0.97687 1.70077 1.17857 1.23310 1.38691 0.86065 0.79508 0.80010 0.79570 1.19854 1.21085 1.19806 1.19474 0.85476 0.83146 0.87867 1.90635 1.48578 1.83280 1.19800 1.22754 1.01747 0.83106 0.95875 1.86434 1.79213 1.11293 1.39535 1.19096 0.91318 0.86505 0.90319 1.21301 1.07542 1.00494 0.94288 1.21096 0.95287 0.91758 0.99381 1.20906 1.04865 0.97931 0.95306 1.20946 0.94807 0.96611 0.93840 1.16515 1.09786 0.91677 0.88388 1.23461 1.01098 0.84428 0.96839 1.76643 1.12296 1.24271 0.95954 1.79091 1.15630 0.91872 1.18410 1.47745 1.42100 1.06974 1.11594 0.67669 1.74787 1.19644 1.26764 0.94927 0.78353 0.87246 0.92146 0.92097 0.90496 0.90023 0.84456 0.85347 0.85378 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.07 19.25 29.55 0.57 -4.50 16 2 C -0.12 -2.58 10.75 -37.12 -0.40 -2.98 16 3 C 0.23 4.87 4.91 -6.83 -0.03 4.84 16 4 N -0.44 -10.94 2.60 -117.93 -0.31 -11.25 16 5 C -0.31 -8.57 9.28 -14.93 -0.14 -8.71 16 6 H 0.10 3.03 7.42 -52.49 -0.39 2.64 16 7 C 0.03 0.85 4.83 -17.47 -0.08 0.76 16 8 N -0.86 -22.31 9.59 55.50 0.53 -21.78 16 9 Si 0.92 20.39 29.60 -169.99 -5.03 15.36 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.45 11.24 7.64 -10.99 -0.08 11.16 16 14 O -0.54 -15.75 16.17 -14.36 -0.23 -15.98 16 15 C 0.04 0.84 3.83 36.00 0.14 0.98 16 16 O -0.26 -5.11 8.02 -39.15 -0.31 -5.43 16 17 C 0.18 2.88 6.69 -38.88 -0.26 2.62 16 18 C -0.22 -2.78 9.03 -39.47 -0.36 -3.14 16 19 C -0.06 -0.57 10.03 -39.55 -0.40 -0.97 16 20 C -0.17 -1.66 10.03 -39.61 -0.40 -2.06 16 21 C -0.04 -0.48 9.70 -39.28 -0.38 -0.86 16 22 C -0.06 -0.90 5.89 -104.76 -0.62 -1.52 16 23 C 0.22 3.68 7.91 -156.30 -1.24 2.44 16 24 N -0.22 -4.30 11.06 32.15 0.36 -3.94 16 25 N -0.05 -0.90 13.47 60.35 0.81 -0.08 16 26 N -0.24 -2.83 7.90 60.35 0.48 -2.35 16 27 H 0.47 2.92 8.96 -340.37 -3.05 -0.13 16 28 N -0.31 -4.19 12.08 32.16 0.39 -3.80 16 29 H 0.20 3.24 7.80 -54.09 -0.42 2.82 16 30 H 0.11 2.43 6.60 -51.93 -0.34 2.08 16 31 H 0.06 1.02 6.69 -51.93 -0.35 0.67 16 32 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 33 H 0.08 1.22 6.94 -51.93 -0.36 0.86 16 34 H 0.08 1.45 7.01 -51.93 -0.36 1.09 16 35 H 0.14 1.59 6.30 -52.48 -0.33 1.26 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.14 1.31 7.88 -52.49 -0.41 0.90 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -35.80 341.61 -7.85 -43.65 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.00 Total: 2.39 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -3.68 Total: -1.93 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 2.26 Total: -43.20 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.55 Total: -21.41 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.80 -7.85 -43.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609020963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.168 kcal (2) G-P(sol) polarization free energy of solvation -35.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds