Wall clock time and date at job start Tue Mar 31 2020 14:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47279 * 281.26323 * 3 2 1 5 5 C 1.37098 * 119.99807 * 263.92912 * 4 3 2 6 6 H 1.07998 * 119.99343 * 199.75030 * 5 4 3 7 7 C 1.38949 * 120.00022 * 19.75297 * 5 4 3 8 8 N 1.31413 * 120.00188 * 21.74468 * 7 5 4 9 9 Si 1.86801 * 119.99673 * 201.74261 * 7 5 4 10 10 H 1.48499 * 109.47104 * 60.00297 * 9 7 5 11 11 H 1.48506 * 109.46858 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47263 * 299.99951 * 9 7 5 13 13 C 1.34777 * 119.99805 * 83.92819 * 4 3 2 14 14 O 1.21289 * 119.99894 * 180.02562 * 13 4 3 15 15 C 1.50697 * 120.00084 * 0.02562 * 13 4 3 16 16 O 1.42894 * 109.47188 * 179.97438 * 15 13 4 17 17 C 1.35841 * 117.00157 * 179.97438 * 16 15 13 18 18 C 1.38591 * 120.11994 * 0.02562 * 17 16 15 19 19 C 1.38173 * 120.06614 * 179.97438 * 18 17 16 20 20 C 1.38383 * 120.29026 * 0.02562 * 19 18 17 21 21 C 1.38007 * 120.24043 * 0.02562 * 20 19 18 22 22 C 1.39273 * 119.93344 * 359.97177 * 21 20 19 23 23 C 1.48403 * 120.14427 * 180.02562 * 22 21 20 24 24 N 1.34067 * 126.67482 * 179.66129 * 23 22 21 25 25 N 1.28982 * 107.26506 * 179.83673 * 24 23 22 26 26 N 1.28725 * 108.95092 * 0.43906 * 25 24 23 27 27 H 0.96994 * 125.34249 * 179.75624 * 26 25 24 28 28 N 1.28879 * 109.32223 * 359.72225 * 26 25 24 29 29 H 4.40646 * 5.51442 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.46958 * 161.26583 * 3 2 1 31 31 H 1.08995 * 109.47574 * 41.26571 * 3 2 1 32 32 H 0.97000 * 119.99645 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46950 * 60.00063 * 15 13 4 34 34 H 1.09003 * 109.47067 * 299.99972 * 15 13 4 35 35 H 1.08009 * 119.96737 * 359.97412 * 18 17 16 36 36 H 1.07999 * 119.85491 * 179.74668 * 19 18 17 37 37 H 1.08001 * 119.88133 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.03482 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.2689 1.3547 5 6 3.4808 0.7711 2.1780 6 1 4.1241 0.5959 3.0276 7 6 3.0043 2.0505 1.9193 8 7 1.9232 2.2140 1.1903 9 14 3.9003 3.5378 2.6080 10 1 5.2916 3.5615 2.0892 11 1 3.1952 4.7768 2.1921 12 1 3.9261 3.4575 4.0906 13 6 3.2432 -1.5393 1.7914 14 8 3.6472 -1.7625 2.9130 15 6 2.8629 -2.6825 0.8861 16 8 3.0652 -3.9201 1.5711 17 6 2.7674 -5.0575 0.8906 18 6 2.2912 -4.9859 -0.4089 19 6 1.9892 -6.1435 -1.1002 20 6 2.1594 -7.3791 -0.5007 21 6 2.6318 -7.4646 0.7932 22 6 2.9393 -6.3040 1.4989 23 6 3.4482 -6.3906 2.8903 24 7 3.7891 -5.3649 3.6835 25 7 4.1765 -5.8632 4.8083 26 7 4.1002 -7.1466 4.7454 27 1 4.3375 -7.7585 5.4596 28 7 3.6585 -7.4912 3.5847 29 1 -1.0500 0.0002 0.0001 30 1 3.0088 0.9741 -0.3301 31 1 3.0096 -0.7716 -0.6777 32 1 1.5908 3.1072 1.0095 33 1 3.4830 -2.6581 -0.0100 34 1 1.8139 -2.5897 0.6048 35 1 2.1560 -4.0243 -0.8818 36 1 1.6144 -6.0836 -2.1113 37 1 1.9217 -8.2797 -1.0473 38 1 2.7630 -8.4306 1.2580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609020963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:34 Heat of formation + Delta-G solvation = 140.278431 kcal Electronic energy + Delta-G solvation = -26860.382641 eV Core-core repulsion = 22901.550501 eV Total energy + Delta-G solvation = -3958.832140 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.34805 -41.34545 -40.23615 -38.28164 -36.96300 -35.33955 -34.55138 -34.05333 -33.02550 -31.60319 -31.19099 -29.49883 -28.06995 -26.28126 -25.69283 -25.32211 -23.10851 -22.59297 -20.96875 -20.26333 -19.69386 -19.10947 -18.41420 -18.06656 -17.73401 -17.28477 -17.12197 -16.87143 -16.25463 -15.81761 -15.54266 -15.37449 -15.15164 -14.66758 -14.52524 -14.33540 -14.01316 -13.61858 -13.52098 -13.46974 -13.09175 -12.78232 -12.51232 -12.47807 -12.29644 -12.18570 -12.15836 -12.04029 -11.86352 -11.84674 -11.15635 -11.06774 -10.64872 -10.28400 -9.81844 -9.80055 -9.10866 -8.31073 -5.93042 -0.22429 0.27358 0.47190 1.38596 1.42105 1.43459 1.50423 1.52483 1.77539 1.96369 2.27664 2.34048 2.41641 2.77960 2.85322 3.04283 3.24077 3.28991 3.80934 3.84698 3.99271 4.07419 4.09485 4.23190 4.33743 4.40438 4.52362 4.55391 4.61264 4.67760 4.94975 4.98945 5.32046 5.43399 5.43590 5.48954 5.54595 5.69959 5.82877 6.04047 6.35987 6.51985 7.15493 7.16515 7.26135 7.38155 7.97127 8.67101 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014679 B = 0.003648 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.021579 B = 7672.678433 C = 9263.298292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.158 4.158 3 C 0.231 3.769 4 N -0.446 5.446 5 C -0.353 4.353 6 H 0.071 0.929 7 C 0.008 3.992 8 N -0.867 5.867 9 Si 0.982 3.018 10 H -0.265 1.265 11 H -0.271 1.271 12 H -0.283 1.283 13 C 0.438 3.562 14 O -0.603 6.603 15 C 0.063 3.937 16 O -0.293 6.293 17 C 0.141 3.859 18 C -0.221 4.221 19 C -0.046 4.046 20 C -0.154 4.154 21 C -0.040 4.040 22 C -0.086 4.086 23 C 0.208 3.792 24 N -0.279 5.279 25 N -0.077 5.077 26 N -0.204 5.204 27 H 0.492 0.508 28 N -0.292 5.292 29 H 0.232 0.768 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.273 0.727 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.457 -19.188 -8.455 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.160 4.160 3 C 0.109 3.891 4 N -0.167 5.167 5 C -0.480 4.480 6 H 0.089 0.911 7 C -0.196 4.196 8 N -0.504 5.504 9 Si 0.806 3.194 10 H -0.190 1.190 11 H -0.195 1.195 12 H -0.209 1.209 13 C 0.227 3.773 14 O -0.487 6.487 15 C -0.016 4.016 16 O -0.204 6.204 17 C 0.092 3.908 18 C -0.239 4.239 19 C -0.065 4.065 20 C -0.172 4.172 21 C -0.060 4.060 22 C -0.090 4.090 23 C -0.071 4.071 24 N -0.151 5.151 25 N -0.072 5.072 26 N -0.054 5.054 27 H 0.351 0.649 28 N -0.146 5.146 29 H 0.248 0.752 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.165 0.835 36 H 0.185 0.815 37 H 0.186 0.814 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.034 -18.814 -7.172 20.161 hybrid contribution 0.103 0.841 0.883 1.224 sum -0.931 -17.973 -6.289 19.064 Atomic orbital electron populations 1.25128 0.96334 1.03890 1.00414 1.23391 0.94934 0.97762 0.99866 1.18386 0.84700 1.02777 0.83286 1.43776 1.56454 1.03746 1.12684 1.19468 1.29668 0.86958 1.11888 0.91099 1.25925 0.95220 1.00724 0.97712 1.70159 1.17843 1.24007 1.38379 0.85180 0.78890 0.77163 0.78158 1.19031 1.19523 1.20903 1.20464 0.84300 0.84458 0.88098 1.90583 1.51104 1.84400 1.22628 1.22456 1.02736 0.81519 0.94853 1.86380 1.80688 1.12197 1.41162 1.19456 0.93980 0.85468 0.91922 1.21521 1.07137 1.02255 0.93020 1.21570 0.93466 0.90778 1.00673 1.21413 1.02114 0.99396 0.94297 1.21239 0.94223 0.95982 0.94581 1.16913 1.11175 0.92715 0.88188 1.23892 1.01228 0.84247 0.97734 1.76626 1.14635 1.26463 0.97353 1.78992 1.16691 0.93421 1.18111 1.47797 1.39568 1.06351 1.11711 0.64941 1.74748 1.19286 1.25590 0.94977 0.75174 0.88737 0.87838 0.91696 0.87263 0.88761 0.83493 0.81508 0.81353 0.82881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.13 19.25 74.32 1.43 -7.70 16 2 C -0.16 -6.66 10.75 31.13 0.33 -6.33 16 3 C 0.23 9.74 4.91 84.57 0.42 10.15 16 4 N -0.45 -23.07 2.60 -645.41 -1.68 -24.74 16 5 C -0.35 -20.21 9.28 84.04 0.78 -19.43 16 6 H 0.07 4.44 7.42 -2.91 -0.02 4.42 16 7 C 0.01 0.44 4.83 84.93 0.41 0.85 16 8 N -0.87 -44.87 9.59 21.66 0.21 -44.66 16 9 Si 0.98 42.44 29.60 68.60 2.03 44.47 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.44 22.79 7.64 87.66 0.67 23.46 16 14 O -0.60 -37.65 16.17 15.98 0.26 -37.39 16 15 C 0.06 2.43 3.83 71.24 0.27 2.70 16 16 O -0.29 -12.22 8.02 -72.73 -0.58 -12.81 16 17 C 0.14 4.54 6.69 22.72 0.15 4.69 16 18 C -0.22 -5.16 9.03 22.34 0.20 -4.95 16 19 C -0.05 -0.73 10.03 22.29 0.22 -0.51 16 20 C -0.15 -2.28 10.03 22.25 0.22 -2.05 16 21 C -0.04 -0.82 9.70 22.46 0.22 -0.61 16 22 C -0.09 -2.58 5.89 -19.95 -0.12 -2.69 16 23 C 0.21 7.10 7.91 137.35 1.09 8.18 16 24 N -0.28 -11.62 11.06 -52.21 -0.58 -12.20 16 25 N -0.08 -2.66 13.47 37.02 0.50 -2.16 16 26 N -0.20 -4.81 7.90 37.02 0.29 -4.52 16 27 H 0.49 5.72 8.96 -347.55 -3.12 2.61 16 28 N -0.29 -7.83 12.08 -52.15 -0.63 -8.46 16 29 H 0.23 6.84 7.80 -4.42 -0.03 6.81 16 30 H 0.09 4.22 6.60 -2.38 -0.02 4.21 16 31 H 0.10 3.35 6.69 -2.39 -0.02 3.34 16 32 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 33 H 0.11 3.38 6.94 -2.39 -0.02 3.37 16 34 H 0.09 3.33 7.01 -2.39 -0.02 3.32 16 35 H 0.15 3.02 6.30 -2.91 -0.02 3.00 16 36 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.15 2.50 7.88 -2.91 -0.02 2.48 16 Total: -1.00 -84.79 341.61 4.15 -80.64 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -1.97 Total: 16.05 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.30 Total: 5.76 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -1.89 Total: -96.73 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.32 Total: -50.20 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -84.79 4.15 -80.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609020963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.919 kcal (2) G-P(sol) polarization free energy of solvation -84.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds