Wall clock time and date at job start Tue Mar 31 2020 15:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21266 * 120.00437 * 2 1 4 4 C 1.46993 * 119.99689 * 179.73134 * 2 1 3 5 5 C 1.39887 * 120.16288 * 359.72119 * 4 2 1 6 6 C 1.38428 * 119.77165 * 179.74836 * 5 4 2 7 7 N 1.39943 * 119.94843 * 180.27592 * 6 5 4 8 8 C 1.34776 * 120.00037 * 34.14783 * 7 6 5 9 9 O 1.21633 * 119.99973 * 4.70772 * 8 7 6 10 10 C 1.47386 * 120.00014 * 184.71448 * 8 7 6 11 11 C 1.39252 * 120.28640 * 4.58957 * 10 8 7 12 12 C 1.38198 * 120.08949 * 180.02562 * 11 10 8 13 13 C 1.38840 * 120.68259 * 0.02562 * 12 11 10 14 14 C 1.37584 * 120.57682 * 359.97438 * 13 12 11 15 15 C 1.40721 * 119.88001 * 359.72451 * 14 13 12 16 16 C 1.40864 * 120.32694 * 180.29907 * 15 14 13 17 17 H 1.08000 * 119.99894 * 145.32072 * 16 15 14 18 18 C 1.40272 * 120.00666 * 325.31386 * 16 15 14 19 19 N 1.30627 * 120.00604 * 169.64871 * 18 16 15 20 20 Si 1.86811 * 119.99690 * 349.65599 * 18 16 15 21 21 H 1.48499 * 109.46924 * 95.08880 * 20 18 16 22 22 H 1.48500 * 109.46981 * 215.08922 * 20 18 16 23 23 H 1.48501 * 109.46930 * 335.08733 * 20 18 16 24 24 C 1.39128 * 120.10236 * 0.51008 * 6 5 4 25 25 C 1.38117 * 120.32969 * 359.76341 * 24 6 5 26 26 C 1.38302 * 120.22541 * 359.97438 * 25 24 6 27 27 F 1.35102 * 120.05499 * 179.97438 * 26 25 24 28 28 H 1.08990 * 109.47447 * 270.27481 * 1 2 3 29 29 H 1.09007 * 109.46791 * 30.27045 * 1 2 3 30 30 H 1.08995 * 109.47333 * 150.26735 * 1 2 3 31 31 H 1.08001 * 120.10982 * 359.97438 * 5 4 2 32 32 H 0.97005 * 119.99984 * 214.13811 * 7 6 5 33 33 H 1.07997 * 119.94929 * 0.03033 * 11 10 8 34 34 H 1.07999 * 119.65574 * 179.97438 * 12 11 10 35 35 H 1.07997 * 119.71120 * 179.97438 * 13 12 11 36 36 H 1.07994 * 120.05973 * 180.02562 * 14 13 12 37 37 H 0.97002 * 120.00109 * 180.02562 * 19 18 16 38 38 H 1.08003 * 119.83716 * 179.74475 * 24 6 5 39 39 H 1.08001 * 119.89380 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0501 0.0000 4 6 2.2419 -1.2730 0.0060 5 6 1.5459 -2.4864 0.0175 6 6 2.2461 -3.6805 0.0178 7 7 1.5535 -4.8965 0.0235 8 6 0.3781 -5.0056 -0.6268 9 8 -0.0391 -4.0748 -1.2894 10 6 -0.4019 -6.2528 -0.5351 11 6 0.0213 -7.2862 0.2968 12 6 -0.7129 -8.4541 0.3793 13 6 -1.8760 -8.6136 -0.3619 14 6 -2.3196 -7.6106 -1.1926 15 6 -1.5940 -6.4088 -1.2901 16 6 -2.0431 -5.3733 -2.1329 17 1 -1.8959 -4.3423 -1.8469 18 6 -2.6812 -5.6810 -3.3435 19 7 -3.2754 -4.7393 -4.0266 20 14 -2.6816 -7.4377 -3.9790 21 1 -3.9336 -8.1161 -3.5578 22 1 -2.5985 -7.4278 -5.4616 23 1 -1.5128 -8.1656 -3.4225 24 6 3.6373 -3.6736 0.0173 25 6 4.3289 -2.4780 0.0117 26 6 3.6430 -1.2771 0.0059 27 9 4.3229 -0.1096 0.0008 28 1 -0.3634 0.0049 1.0275 29 1 -0.3633 0.8876 -0.5181 30 1 -0.3634 -0.8923 -0.5096 31 1 0.4659 -2.4914 0.0225 32 1 1.9194 -5.6609 0.4955 33 1 0.9245 -7.1747 0.8783 34 1 -0.3780 -9.2513 1.0265 35 1 -2.4374 -9.5331 -0.2857 36 1 -3.2257 -7.7434 -1.7650 37 1 -3.7170 -4.9523 -4.8636 38 1 4.1793 -4.6078 0.0217 39 1 5.4089 -2.4809 0.0117 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001623744947.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:36 Heat of formation + Delta-G solvation = -63.368453 kcal Electronic energy + Delta-G solvation = -26749.302902 eV Core-core repulsion = 22729.427258 eV Total energy + Delta-G solvation = -4019.875644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.78214 -40.33054 -39.24378 -38.13343 -36.95457 -34.41107 -33.67464 -32.14290 -30.68259 -30.64191 -29.29235 -28.63699 -25.57271 -24.22091 -23.26172 -22.17608 -21.19803 -19.95081 -19.78074 -17.94529 -17.62134 -17.25364 -16.79440 -16.20542 -15.69012 -15.47311 -15.30686 -14.63975 -14.51084 -14.48816 -14.36216 -14.27106 -13.92303 -13.72614 -13.12840 -13.05255 -12.77156 -12.60626 -12.39773 -12.14438 -12.06658 -11.99943 -11.68530 -11.56641 -11.08502 -10.88218 -10.60238 -10.38858 -10.00860 -9.91770 -9.66445 -9.41868 -9.21914 -8.72231 -8.04771 -7.86010 -7.76814 -7.08183 -4.67599 0.52104 1.15749 1.89544 2.36856 2.46288 2.97215 3.07225 3.16845 3.40705 3.50902 3.80932 3.85349 3.98855 4.25851 4.41253 4.60275 4.92725 5.14515 5.17753 5.23354 5.39137 5.44274 5.49443 5.60221 5.67282 5.84547 5.88588 5.93654 6.06199 6.08419 6.19048 6.29576 6.34254 6.50385 6.62601 6.91703 6.99712 7.06698 7.21694 7.41956 7.52480 7.56182 7.83376 7.91596 8.27060 8.44474 8.65583 8.96953 9.87437 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.003708 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.750867 B = 7550.194294 C = 8660.999353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.398 3.602 3 O -0.455 6.455 4 C -0.188 4.188 5 C -0.051 4.051 6 C 0.150 3.850 7 N -0.688 5.688 8 C 0.559 3.441 9 O -0.510 6.510 10 C -0.258 4.258 11 C -0.038 4.038 12 C -0.253 4.253 13 C -0.063 4.063 14 C -0.220 4.220 15 C 0.116 3.884 16 C -0.395 4.395 17 H 0.126 0.874 18 C 0.078 3.922 19 N -0.783 5.783 20 Si 0.906 3.094 21 H -0.268 1.268 22 H -0.287 1.287 23 H -0.239 1.239 24 C -0.098 4.098 25 C -0.147 4.147 26 C 0.123 3.877 27 F -0.124 7.124 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.159 0.841 32 H 0.406 0.594 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.290 0.710 38 H 0.138 0.862 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.401 -1.152 7.300 11.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.277 3.723 3 O -0.331 6.331 4 C -0.191 4.191 5 C -0.072 4.072 6 C 0.054 3.946 7 N -0.334 5.334 8 C 0.355 3.645 9 O -0.386 6.386 10 C -0.263 4.263 11 C -0.057 4.057 12 C -0.272 4.272 13 C -0.082 4.082 14 C -0.239 4.239 15 C 0.111 3.889 16 C -0.421 4.421 17 H 0.144 0.856 18 C -0.144 4.144 19 N -0.406 5.406 20 Si 0.732 3.268 21 H -0.194 1.194 22 H -0.215 1.215 23 H -0.162 1.162 24 C -0.119 4.119 25 C -0.167 4.167 26 C 0.103 3.897 27 F -0.103 7.103 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.176 0.824 32 H 0.243 0.757 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.156 0.844 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.200 0.221 6.580 10.516 hybrid contribution 0.206 -1.211 -0.214 1.247 sum 8.406 -0.990 6.366 10.591 Atomic orbital electron populations 1.22255 0.92895 1.05872 1.04872 1.22367 0.92056 0.86920 0.70986 1.90561 1.72169 1.34006 1.36321 1.20525 0.92320 0.96255 1.09963 1.21539 1.01855 0.88990 0.94822 1.17696 0.90713 0.86791 0.99424 1.43812 1.23481 1.11237 1.54895 1.18555 0.79153 0.88881 0.77873 1.90740 1.68335 1.40497 1.39073 1.19138 0.99528 0.95206 1.12455 1.20758 0.96688 0.93078 0.95177 1.20290 1.00022 0.98729 1.08167 1.20758 0.95342 0.96856 0.95253 1.21120 1.01458 0.96547 1.04793 1.17492 0.88667 0.91468 0.91247 1.20271 1.24092 0.97520 1.00253 0.85646 1.26438 0.91143 0.99785 0.97044 1.69552 1.22154 1.35686 1.13160 0.86387 0.81189 0.82123 0.77074 1.19370 1.21466 1.16223 1.20991 0.92325 0.98354 1.00224 1.20841 1.00772 0.90362 1.04693 1.17831 0.88955 0.81749 1.01199 1.91544 1.79435 1.46059 1.93231 0.88411 0.89271 0.88409 0.82391 0.75737 0.88655 0.88364 0.88421 0.87822 0.89958 0.84385 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.53 9.75 36.01 0.35 -2.18 16 2 C 0.40 6.10 7.22 -30.76 -0.22 5.87 16 3 O -0.45 -8.13 16.08 5.57 0.09 -8.04 16 4 C -0.19 -2.85 5.87 -105.03 -0.62 -3.47 16 5 C -0.05 -0.79 7.96 -38.89 -0.31 -1.10 16 6 C 0.15 2.15 6.26 -83.75 -0.52 1.63 16 7 N -0.69 -10.31 5.28 -10.87 -0.06 -10.37 16 8 C 0.56 11.08 7.46 -12.54 -0.09 10.99 16 9 O -0.51 -11.71 11.23 5.25 0.06 -11.65 16 10 C -0.26 -5.39 5.92 -104.37 -0.62 -6.01 16 11 C -0.04 -0.67 9.51 -39.22 -0.37 -1.04 16 12 C -0.25 -4.47 10.03 -39.37 -0.39 -4.87 16 13 C -0.06 -1.21 10.01 -39.60 -0.40 -1.60 16 14 C -0.22 -4.79 6.89 -38.88 -0.27 -5.06 16 15 C 0.12 2.72 5.08 -106.54 -0.54 2.18 16 16 C -0.40 -10.15 8.36 -37.82 -0.32 -10.46 16 17 H 0.13 3.51 5.90 -52.49 -0.31 3.20 16 18 C 0.08 1.93 5.48 -17.30 -0.09 1.84 16 19 N -0.78 -19.91 13.92 55.56 0.77 -19.13 16 20 Si 0.91 19.34 24.47 -169.99 -4.16 15.18 16 21 H -0.27 -5.44 6.85 56.52 0.39 -5.06 16 22 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.24 -5.20 6.51 56.52 0.37 -4.83 16 24 C -0.10 -1.13 9.95 -39.30 -0.39 -1.52 16 25 C -0.15 -1.73 10.00 -39.60 -0.40 -2.12 16 26 C 0.12 1.79 7.29 -38.85 -0.28 1.51 16 27 F -0.12 -1.98 15.54 2.25 0.03 -1.94 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 30 H 0.10 1.30 6.48 -51.93 -0.34 0.96 16 31 H 0.16 2.59 4.75 -52.49 -0.25 2.34 16 32 H 0.41 4.80 6.90 -40.82 -0.28 4.52 16 33 H 0.10 1.29 6.45 -52.49 -0.34 0.95 16 34 H 0.10 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.10 2.23 4.83 -52.49 -0.25 1.98 16 37 H 0.29 6.62 8.29 -40.82 -0.34 6.28 16 38 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -29.38 332.15 -7.23 -36.62 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -3.49 Total: 9.74 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -5.49 Total: -15.40 kcal Atomic # 7 Polarization: -30.22 SS G_CDS: 0.72 Total: -29.50 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.15 Total: -19.69 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.03 Total: -1.94 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.16 Total: 15.18 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.38 -7.23 -36.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001623744947.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.753 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds