Wall clock time and date at job start Tue Mar 31 2020 15:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21266 * 120.00437 * 2 1 4 4 C 1.46993 * 119.99689 * 179.73134 * 2 1 3 5 5 C 1.39887 * 120.16288 * 359.72119 * 4 2 1 6 6 C 1.38428 * 119.77165 * 179.74836 * 5 4 2 7 7 N 1.39943 * 119.94843 * 180.27592 * 6 5 4 8 8 C 1.34776 * 120.00037 * 34.14783 * 7 6 5 9 9 O 1.21633 * 119.99973 * 4.70772 * 8 7 6 10 10 C 1.47386 * 120.00014 * 184.71448 * 8 7 6 11 11 C 1.39252 * 120.28640 * 4.58957 * 10 8 7 12 12 C 1.38198 * 120.08949 * 180.02562 * 11 10 8 13 13 C 1.38840 * 120.68259 * 0.02562 * 12 11 10 14 14 C 1.37584 * 120.57682 * 359.97438 * 13 12 11 15 15 C 1.40721 * 119.88001 * 359.72451 * 14 13 12 16 16 C 1.40864 * 120.32694 * 180.29907 * 15 14 13 17 17 H 1.08000 * 119.99894 * 145.32072 * 16 15 14 18 18 C 1.40272 * 120.00666 * 325.31386 * 16 15 14 19 19 N 1.30627 * 120.00604 * 169.64871 * 18 16 15 20 20 Si 1.86811 * 119.99690 * 349.65599 * 18 16 15 21 21 H 1.48499 * 109.46924 * 95.08880 * 20 18 16 22 22 H 1.48500 * 109.46981 * 215.08922 * 20 18 16 23 23 H 1.48501 * 109.46930 * 335.08733 * 20 18 16 24 24 C 1.39128 * 120.10236 * 0.51008 * 6 5 4 25 25 C 1.38117 * 120.32969 * 359.76341 * 24 6 5 26 26 C 1.38302 * 120.22541 * 359.97438 * 25 24 6 27 27 F 1.35102 * 120.05499 * 179.97438 * 26 25 24 28 28 H 1.08990 * 109.47447 * 270.27481 * 1 2 3 29 29 H 1.09007 * 109.46791 * 30.27045 * 1 2 3 30 30 H 1.08995 * 109.47333 * 150.26735 * 1 2 3 31 31 H 1.08001 * 120.10982 * 359.97438 * 5 4 2 32 32 H 0.97005 * 119.99984 * 214.13811 * 7 6 5 33 33 H 1.07997 * 119.94929 * 0.03033 * 11 10 8 34 34 H 1.07999 * 119.65574 * 179.97438 * 12 11 10 35 35 H 1.07997 * 119.71120 * 179.97438 * 13 12 11 36 36 H 1.07994 * 120.05973 * 180.02562 * 14 13 12 37 37 H 0.97002 * 120.00109 * 180.02562 * 19 18 16 38 38 H 1.08003 * 119.83716 * 179.74475 * 24 6 5 39 39 H 1.08001 * 119.89380 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0501 0.0000 4 6 2.2419 -1.2730 0.0060 5 6 1.5459 -2.4864 0.0175 6 6 2.2461 -3.6805 0.0178 7 7 1.5535 -4.8965 0.0235 8 6 0.3781 -5.0056 -0.6268 9 8 -0.0391 -4.0748 -1.2894 10 6 -0.4019 -6.2528 -0.5351 11 6 0.0213 -7.2862 0.2968 12 6 -0.7129 -8.4541 0.3793 13 6 -1.8760 -8.6136 -0.3619 14 6 -2.3196 -7.6106 -1.1926 15 6 -1.5940 -6.4088 -1.2901 16 6 -2.0431 -5.3733 -2.1329 17 1 -1.8959 -4.3423 -1.8469 18 6 -2.6812 -5.6810 -3.3435 19 7 -3.2754 -4.7393 -4.0266 20 14 -2.6816 -7.4377 -3.9790 21 1 -3.9336 -8.1161 -3.5578 22 1 -2.5985 -7.4278 -5.4616 23 1 -1.5128 -8.1656 -3.4225 24 6 3.6373 -3.6736 0.0173 25 6 4.3289 -2.4780 0.0117 26 6 3.6430 -1.2771 0.0059 27 9 4.3229 -0.1096 0.0008 28 1 -0.3634 0.0049 1.0275 29 1 -0.3633 0.8876 -0.5181 30 1 -0.3634 -0.8923 -0.5096 31 1 0.4659 -2.4914 0.0225 32 1 1.9194 -5.6609 0.4955 33 1 0.9245 -7.1747 0.8783 34 1 -0.3780 -9.2513 1.0265 35 1 -2.4374 -9.5331 -0.2857 36 1 -3.2257 -7.7434 -1.7650 37 1 -3.7170 -4.9523 -4.8636 38 1 4.1793 -4.6078 0.0217 39 1 5.4089 -2.4809 0.0117 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001623744947.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:35 Heat of formation + Delta-G solvation = -81.078621 kcal Electronic energy + Delta-G solvation = -26750.070872 eV Core-core repulsion = 22729.427258 eV Total energy + Delta-G solvation = -4020.643614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.96987 -41.63906 -40.59090 -39.49674 -38.41943 -35.89555 -35.28212 -33.26147 -32.29710 -32.14389 -30.38505 -29.90048 -27.22439 -25.35356 -24.66985 -23.57181 -22.65128 -21.22217 -21.19019 -19.51115 -18.86073 -18.62623 -18.11389 -17.48736 -17.11051 -16.85175 -16.54594 -15.95775 -15.85747 -15.79911 -15.79186 -15.64190 -15.41719 -15.02503 -14.53680 -14.39443 -14.22740 -13.89528 -13.79212 -13.52054 -13.24706 -13.17053 -13.13227 -12.72078 -12.66700 -12.50375 -12.17042 -12.02913 -11.59400 -11.29134 -11.08552 -10.88697 -10.43682 -10.18987 -9.56918 -9.42499 -9.07566 -8.83168 -6.48567 -0.61286 0.00062 0.38394 0.86649 1.19771 1.25898 1.39107 1.47466 2.08497 2.12996 2.15621 2.57078 2.74119 2.88011 3.13346 3.54076 3.58041 3.90312 4.00737 4.09831 4.22775 4.25401 4.38555 4.40825 4.46801 4.48721 4.71305 4.78445 4.84767 4.89444 4.98090 5.00282 5.03414 5.16773 5.29607 5.36350 5.47462 5.69233 5.80823 5.89824 5.97783 6.27411 6.31203 6.47906 6.57598 6.78146 6.84602 7.48162 8.19351 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.003708 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.750867 B = 7550.194294 C = 8660.999353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.396 3.604 3 O -0.488 6.488 4 C -0.206 4.206 5 C -0.063 4.063 6 C 0.130 3.870 7 N -0.666 5.666 8 C 0.557 3.443 9 O -0.549 6.549 10 C -0.268 4.268 11 C -0.035 4.035 12 C -0.232 4.232 13 C -0.061 4.061 14 C -0.247 4.247 15 C 0.103 3.897 16 C -0.444 4.444 17 H 0.082 0.918 18 C 0.038 3.962 19 N -0.842 5.842 20 Si 0.962 3.038 21 H -0.253 1.253 22 H -0.285 1.285 23 H -0.243 1.243 24 C -0.071 4.071 25 C -0.132 4.132 26 C 0.109 3.891 27 F -0.135 7.135 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.425 0.575 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.098 0.902 37 H 0.293 0.707 38 H 0.184 0.816 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.461 -5.121 9.751 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.277 3.723 3 O -0.366 6.366 4 C -0.209 4.209 5 C -0.083 4.083 6 C 0.034 3.966 7 N -0.314 5.314 8 C 0.352 3.648 9 O -0.428 6.428 10 C -0.273 4.273 11 C -0.053 4.053 12 C -0.251 4.251 13 C -0.079 4.079 14 C -0.266 4.266 15 C 0.098 3.902 16 C -0.472 4.472 17 H 0.100 0.900 18 C -0.177 4.177 19 N -0.469 5.469 20 Si 0.785 3.215 21 H -0.178 1.178 22 H -0.213 1.213 23 H -0.166 1.166 24 C -0.091 4.091 25 C -0.151 4.151 26 C 0.088 3.912 27 F -0.113 7.113 28 H 0.139 0.861 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.156 0.844 32 H 0.265 0.735 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.201 0.799 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 11.288 -3.777 9.075 14.968 hybrid contribution -0.487 -0.090 -0.641 0.810 sum 10.801 -3.867 8.435 14.239 Atomic orbital electron populations 1.22236 0.91367 1.05497 1.06208 1.22750 0.93067 0.86765 0.69704 1.90538 1.72863 1.34905 1.38308 1.20533 0.93076 0.95920 1.11361 1.21402 1.01142 0.89957 0.95834 1.17901 0.92051 0.85839 1.00796 1.43379 1.21904 1.12185 1.53891 1.18607 0.80302 0.88163 0.77738 1.90763 1.69500 1.41725 1.40827 1.19557 0.98984 0.96584 1.12153 1.21258 0.98241 0.91716 0.94109 1.20935 0.98336 0.99364 1.06453 1.21248 0.95930 0.97184 0.93545 1.21204 1.01831 0.97045 1.06539 1.17763 0.89585 0.91748 0.91059 1.20045 1.28257 0.96345 1.02595 0.90002 1.27095 0.90689 1.03071 0.96868 1.69617 1.25419 1.37400 1.14415 0.85548 0.81383 0.78109 0.76420 1.17770 1.21255 1.16597 1.21397 0.90737 1.00097 0.96855 1.21255 1.02557 0.88890 1.02431 1.18219 0.88837 0.82520 1.01580 1.91518 1.79463 1.47001 1.93366 0.86148 0.88530 0.89732 0.84432 0.73463 0.83623 0.83866 0.84953 0.88420 0.89653 0.79892 0.80292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.28 9.75 71.24 0.69 -4.59 16 2 C 0.40 12.74 7.22 27.98 0.20 12.94 16 3 O -0.49 -18.18 16.08 -2.99 -0.05 -18.23 16 4 C -0.21 -6.37 5.87 -20.13 -0.12 -6.49 16 5 C -0.06 -1.96 7.96 22.71 0.18 -1.78 16 6 C 0.13 3.45 6.26 38.10 0.24 3.69 16 7 N -0.67 -18.20 5.28 -306.55 -1.62 -19.82 16 8 C 0.56 21.98 7.46 86.65 0.65 22.62 16 9 O -0.55 -26.77 11.23 -4.13 -0.05 -26.82 16 10 C -0.27 -10.82 5.92 -19.70 -0.12 -10.94 16 11 C -0.03 -1.05 9.51 22.50 0.21 -0.84 16 12 C -0.23 -6.76 10.03 22.40 0.22 -6.54 16 13 C -0.06 -2.05 10.01 22.26 0.22 -1.82 16 14 C -0.25 -10.46 6.89 22.72 0.16 -10.31 16 15 C 0.10 4.89 5.08 -21.11 -0.11 4.78 16 16 C -0.44 -24.55 8.36 23.41 0.20 -24.35 16 17 H 0.08 5.11 5.90 -2.91 -0.02 5.09 16 18 C 0.04 2.01 5.48 85.37 0.47 2.48 16 19 N -0.84 -46.68 13.92 21.88 0.30 -46.37 16 20 Si 0.96 41.24 24.47 68.60 1.68 42.92 16 21 H -0.25 -9.99 6.85 99.48 0.68 -9.31 16 22 H -0.29 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.24 -10.29 6.51 99.48 0.65 -9.65 16 24 C -0.07 -1.31 9.95 22.45 0.22 -1.09 16 25 C -0.13 -2.60 10.00 22.26 0.22 -2.38 16 26 C 0.11 3.04 7.29 22.74 0.17 3.21 16 27 F -0.14 -4.22 15.54 44.97 0.70 -3.53 16 28 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 30 H 0.08 2.52 6.48 -2.39 -0.02 2.51 16 31 H 0.14 4.86 4.75 -2.91 -0.01 4.85 16 32 H 0.43 7.92 6.90 -92.70 -0.64 7.28 16 33 H 0.15 2.89 6.45 -2.91 -0.02 2.87 16 34 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 36 H 0.10 4.18 4.83 -2.91 -0.01 4.17 16 37 H 0.29 14.59 8.29 -92.71 -0.77 13.82 16 38 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 39 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -72.31 332.15 5.10 -67.21 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.42 Total: 26.02 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 3.71 Total: -21.39 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -1.31 Total: -66.19 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -0.09 Total: -45.04 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.70 Total: -3.53 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 1.68 Total: 42.92 kcal Total: -72.31 5.10 -67.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001623744947.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.865 kcal (2) G-P(sol) polarization free energy of solvation -72.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds