Wall clock time and date at job start Tue Mar 31 2020 15:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35708 * 117.00299 * 2 1 4 4 C 1.38937 * 119.86400 * 179.97438 * 3 2 1 5 5 C 1.37967 * 120.13210 * 180.02562 * 4 3 2 6 6 F 1.35100 * 120.06928 * 179.97438 * 5 4 3 7 7 C 1.40058 * 119.86312 * 359.97438 * 5 4 3 8 8 C 1.47310 * 120.13057 * 179.97438 * 7 5 4 9 9 O 1.21616 * 120.00169 * 90.00405 * 8 7 5 10 10 N 1.34774 * 119.99932 * 270.00320 * 8 7 5 11 11 C 1.47486 * 125.59533 * 359.93518 * 10 8 7 12 12 C 1.54323 * 107.03754 * 181.08247 * 11 10 8 13 13 C 1.55153 * 103.10236 * 22.24109 * 12 11 10 14 14 O 1.42901 * 111.00507 * 82.48346 * 13 12 11 15 15 C 1.50696 * 111.00654 * 206.30001 * 13 12 11 16 16 H 1.08005 * 119.99750 * 359.97438 * 15 13 12 17 17 C 1.37878 * 120.00271 * 180.02562 * 15 13 12 18 18 N 1.31513 * 119.99704 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00164 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47142 * 59.99474 * 19 17 15 21 21 H 1.48499 * 109.47275 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47044 * 299.99468 * 19 17 15 23 23 C 1.47428 * 125.64737 * 180.02562 * 10 8 7 24 24 C 1.40060 * 119.73726 * 0.25828 * 7 5 4 25 25 F 1.35099 * 120.06906 * 179.72554 * 24 7 5 26 26 C 1.37965 * 119.86066 * 359.48759 * 24 7 5 27 27 H 1.09000 * 109.47427 * 59.99559 * 1 2 3 28 28 H 1.09001 * 109.47719 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47259 * 300.00225 * 1 2 3 30 30 H 1.08000 * 119.93882 * 0.05057 * 4 3 2 31 31 H 1.09000 * 110.02886 * 61.71597 * 11 10 8 32 32 H 1.09005 * 109.96368 * 300.40454 * 11 10 8 33 33 H 1.09002 * 110.72057 * 263.78860 * 12 11 10 34 34 H 1.09003 * 110.71837 * 140.69433 * 12 11 10 35 35 H 0.96703 * 113.99966 * 179.97438 * 14 13 12 36 36 H 0.97007 * 119.99658 * 180.02562 * 18 17 15 37 37 H 1.09000 * 110.36462 * 37.00177 * 23 10 8 38 38 H 1.08996 * 110.46287 * 274.72257 * 23 10 8 39 39 H 1.08000 * 119.93249 * 180.28069 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4328 1.2785 0.0005 5 6 4.0649 2.5048 0.0011 6 9 5.4143 2.5708 0.0021 7 6 3.3049 3.6812 0.0005 8 6 3.9737 4.9937 0.0017 9 8 4.2510 5.5359 -1.0511 10 7 4.2784 5.5937 1.1694 11 6 3.9990 5.0510 2.5120 12 6 4.4987 6.0936 3.5341 13 6 4.5148 7.4106 2.7140 14 8 3.2141 8.0005 2.6668 15 6 5.5250 8.3808 3.2699 16 1 6.1171 8.1095 4.1315 17 6 5.6926 9.6154 2.6793 18 7 4.9713 9.9460 1.6305 19 14 6.9444 10.8184 3.3688 20 1 8.2976 10.2089 3.3167 21 1 6.9314 12.0639 2.5603 22 1 6.5995 11.1385 4.7773 23 6 4.9439 6.9011 1.3156 24 6 1.9064 3.6048 0.0049 25 9 1.1667 4.7353 0.0100 26 6 1.2857 2.3726 -0.0009 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 4.0178 0.3707 0.0001 31 1 4.5307 4.1098 2.6522 32 1 2.9271 4.8955 2.6349 33 1 5.5011 5.8434 3.8816 34 1 3.8089 6.1710 4.3746 35 1 3.1747 8.8263 2.1652 36 1 5.0895 10.8144 1.2148 37 1 4.6042 7.5884 0.5408 38 1 6.0267 6.7847 1.2704 39 1 0.2074 2.3124 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646975999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:05 Heat of formation + Delta-G solvation = -175.117501 kcal Electronic energy + Delta-G solvation = -28535.584144 eV Core-core repulsion = 24080.093473 eV Total energy + Delta-G solvation = -4455.490671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.18354 -49.12956 -40.48971 -39.40312 -37.53323 -36.77274 -34.26772 -32.15491 -31.20469 -30.80676 -29.86947 -28.03517 -27.67904 -25.34272 -23.69878 -23.05592 -22.30639 -19.73754 -19.44750 -18.99540 -17.92592 -17.35754 -16.99745 -16.62677 -16.48600 -16.12409 -15.86819 -15.43798 -15.38687 -15.17299 -14.86169 -14.79610 -14.68574 -14.31061 -13.17604 -13.14670 -13.07534 -12.91747 -12.80619 -12.59794 -12.30486 -11.94154 -11.79551 -11.63907 -11.45887 -11.15741 -11.03896 -10.82496 -10.61756 -10.51281 -10.19527 -9.64875 -9.40555 -9.13590 -8.69802 -8.68417 -8.40269 -7.84551 -6.29774 -4.39652 0.63405 0.68238 2.59483 2.86715 2.96808 3.21784 3.27835 3.29310 3.50883 3.66858 4.05636 4.25226 4.45542 4.56915 4.61568 4.69347 4.73499 4.81198 4.97282 5.08168 5.39592 5.45285 5.53997 5.60264 5.64351 5.71672 5.80880 6.02704 6.11736 6.23100 6.47753 6.69688 6.78496 6.82157 6.90728 7.23014 7.31593 7.73312 7.97228 8.09163 8.55168 8.64116 9.30142 9.45646 10.77528 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024537 B = 0.003357 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.840100 B = 8338.596541 C = 8584.179293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.304 6.304 3 C 0.196 3.804 4 C -0.202 4.202 5 C 0.202 3.798 6 F -0.114 7.114 7 C -0.219 4.219 8 C 0.572 3.428 9 O -0.533 6.533 10 N -0.594 5.594 11 C 0.104 3.896 12 C -0.117 4.117 13 C 0.251 3.749 14 O -0.583 6.583 15 C -0.539 4.539 16 H 0.068 0.932 17 C 0.071 3.929 18 N -0.895 5.895 19 Si 0.906 3.094 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.093 3.907 24 C 0.206 3.794 25 F -0.113 7.113 26 C -0.259 4.259 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.156 0.844 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.386 0.614 36 H 0.272 0.728 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.161 -18.891 -1.305 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.216 6.216 3 C 0.149 3.851 4 C -0.221 4.221 5 C 0.181 3.819 6 F -0.092 7.092 7 C -0.225 4.225 8 C 0.357 3.643 9 O -0.411 6.411 10 N -0.325 5.325 11 C -0.019 4.019 12 C -0.155 4.155 13 C 0.210 3.790 14 O -0.394 6.394 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.534 5.534 19 Si 0.733 3.267 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.028 4.028 24 C 0.185 3.815 25 F -0.090 7.090 26 C -0.279 4.279 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.081 0.919 30 H 0.174 0.826 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.239 0.761 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.107 -19.132 -1.696 20.847 hybrid contribution 0.632 1.467 -0.088 1.600 sum -7.474 -17.664 -1.784 19.263 Atomic orbital electron populations 1.23230 0.77307 1.04639 1.02150 1.86067 1.22253 1.25673 1.87583 1.18277 0.90989 0.83985 0.91831 1.20118 0.92342 0.97523 1.12134 1.16744 0.77195 0.91476 0.96447 1.91597 1.27690 1.97013 1.92865 1.19981 0.93014 0.95199 1.14280 1.17181 0.79656 0.83754 0.83715 1.90805 1.54557 1.65146 1.30611 1.48807 1.57128 1.22013 1.04573 1.22117 0.99833 0.97081 0.82859 1.22627 1.01146 0.94627 0.97105 1.19573 0.82505 0.88880 0.88049 1.86067 1.31240 1.44016 1.78052 1.21451 1.21397 0.99826 1.15008 0.91425 1.25092 0.95832 0.98175 0.94143 1.69559 1.40295 1.22677 1.20835 0.86423 0.81315 0.79884 0.79058 1.19985 1.21056 1.19971 1.23386 0.95984 0.80898 1.02581 1.16866 0.86667 0.82315 0.95610 1.91620 1.75868 1.48891 1.92670 1.21080 1.01740 0.90393 1.14681 0.91963 0.87588 0.91897 0.82638 0.92575 0.92187 0.90297 0.90533 0.76126 0.91756 0.89749 0.91742 0.82966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.80 101.05 0.99 1.10 16 2 O -0.30 -2.61 10.48 -18.83 -0.20 -2.81 16 3 C 0.20 2.03 6.69 -39.06 -0.26 1.77 16 4 C -0.20 -2.26 9.94 -39.42 -0.39 -2.65 16 5 C 0.20 2.92 7.28 -39.00 -0.28 2.64 16 6 F -0.11 -1.78 16.83 2.25 0.04 -1.74 16 7 C -0.22 -3.73 4.82 -104.84 -0.50 -4.23 16 8 C 0.57 12.36 6.55 -12.57 -0.08 12.27 16 9 O -0.53 -13.43 17.36 5.26 0.09 -13.34 16 10 N -0.59 -12.88 3.34 -171.46 -0.57 -13.45 16 11 C 0.10 1.92 6.50 -2.81 -0.02 1.90 16 12 C -0.12 -2.34 6.11 -24.90 -0.15 -2.50 16 13 C 0.25 6.12 0.89 -89.63 -0.08 6.04 16 14 O -0.58 -15.13 13.18 -35.23 -0.46 -15.59 16 15 C -0.54 -13.96 8.25 -34.44 -0.28 -14.25 16 16 H 0.07 1.70 7.76 -52.48 -0.41 1.29 16 17 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 18 N -0.89 -23.94 10.71 55.43 0.59 -23.35 16 19 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C 0.09 2.27 5.63 -2.54 -0.01 2.26 16 24 C 0.21 3.07 7.28 -39.00 -0.28 2.79 16 25 F -0.11 -1.90 16.83 2.25 0.04 -1.86 16 26 C -0.26 -2.83 8.99 -39.42 -0.35 -3.19 16 27 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 28 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.26 7.65 -51.92 -0.40 -0.13 16 30 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.47 8.01 -51.93 -0.42 1.05 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.39 10.39 6.93 45.56 0.32 10.70 16 36 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.08 2.32 7.64 -51.93 -0.40 1.93 16 38 H 0.06 1.60 8.03 -51.93 -0.42 1.19 16 39 H 0.15 1.22 6.27 -52.49 -0.33 0.89 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -31.14 342.51 -5.84 -36.98 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -3.69 Total: 9.00 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.82 Total: 5.69 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.02 Total: -36.80 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.57 Total: -31.74 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.08 Total: -3.60 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.14 -5.84 -36.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646975999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.137 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds