Wall clock time and date at job start Tue Mar 31 2020 15:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35708 * 117.00299 * 2 1 4 4 C 1.38937 * 119.86400 * 179.97438 * 3 2 1 5 5 C 1.37967 * 120.13210 * 180.02562 * 4 3 2 6 6 F 1.35100 * 120.06928 * 179.97438 * 5 4 3 7 7 C 1.40058 * 119.86312 * 359.97438 * 5 4 3 8 8 C 1.47310 * 120.13057 * 179.97438 * 7 5 4 9 9 O 1.21616 * 120.00169 * 90.00405 * 8 7 5 10 10 N 1.34774 * 119.99932 * 270.00320 * 8 7 5 11 11 C 1.47486 * 125.59533 * 359.93518 * 10 8 7 12 12 C 1.54323 * 107.03754 * 181.08247 * 11 10 8 13 13 C 1.55153 * 103.10236 * 22.24109 * 12 11 10 14 14 O 1.42901 * 111.00507 * 82.48346 * 13 12 11 15 15 C 1.50696 * 111.00654 * 206.30001 * 13 12 11 16 16 H 1.08005 * 119.99750 * 359.97438 * 15 13 12 17 17 C 1.37878 * 120.00271 * 180.02562 * 15 13 12 18 18 N 1.31513 * 119.99704 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00164 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47142 * 59.99474 * 19 17 15 21 21 H 1.48499 * 109.47275 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47044 * 299.99468 * 19 17 15 23 23 C 1.47428 * 125.64737 * 180.02562 * 10 8 7 24 24 C 1.40060 * 119.73726 * 0.25828 * 7 5 4 25 25 F 1.35099 * 120.06906 * 179.72554 * 24 7 5 26 26 C 1.37965 * 119.86066 * 359.48759 * 24 7 5 27 27 H 1.09000 * 109.47427 * 59.99559 * 1 2 3 28 28 H 1.09001 * 109.47719 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47259 * 300.00225 * 1 2 3 30 30 H 1.08000 * 119.93882 * 0.05057 * 4 3 2 31 31 H 1.09000 * 110.02886 * 61.71597 * 11 10 8 32 32 H 1.09005 * 109.96368 * 300.40454 * 11 10 8 33 33 H 1.09002 * 110.72057 * 263.78860 * 12 11 10 34 34 H 1.09003 * 110.71837 * 140.69433 * 12 11 10 35 35 H 0.96703 * 113.99966 * 179.97438 * 14 13 12 36 36 H 0.97007 * 119.99658 * 180.02562 * 18 17 15 37 37 H 1.09000 * 110.36462 * 37.00177 * 23 10 8 38 38 H 1.08996 * 110.46287 * 274.72257 * 23 10 8 39 39 H 1.08000 * 119.93249 * 180.28069 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4328 1.2785 0.0005 5 6 4.0649 2.5048 0.0011 6 9 5.4143 2.5708 0.0021 7 6 3.3049 3.6812 0.0005 8 6 3.9737 4.9937 0.0017 9 8 4.2510 5.5359 -1.0511 10 7 4.2784 5.5937 1.1694 11 6 3.9990 5.0510 2.5120 12 6 4.4987 6.0936 3.5341 13 6 4.5148 7.4106 2.7140 14 8 3.2141 8.0005 2.6668 15 6 5.5250 8.3808 3.2699 16 1 6.1171 8.1095 4.1315 17 6 5.6926 9.6154 2.6793 18 7 4.9713 9.9460 1.6305 19 14 6.9444 10.8184 3.3688 20 1 8.2976 10.2089 3.3167 21 1 6.9314 12.0639 2.5603 22 1 6.5995 11.1385 4.7773 23 6 4.9439 6.9011 1.3156 24 6 1.9064 3.6048 0.0049 25 9 1.1667 4.7353 0.0100 26 6 1.2857 2.3726 -0.0009 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 4.0178 0.3707 0.0001 31 1 4.5307 4.1098 2.6522 32 1 2.9271 4.8955 2.6349 33 1 5.5011 5.8434 3.8816 34 1 3.8089 6.1710 4.3746 35 1 3.1747 8.8263 2.1652 36 1 5.0895 10.8144 1.2148 37 1 4.6042 7.5884 0.5408 38 1 6.0267 6.7847 1.2704 39 1 0.2074 2.3124 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646975999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:05 Heat of formation + Delta-G solvation = -197.444093 kcal Electronic energy + Delta-G solvation = -28536.552297 eV Core-core repulsion = 24080.093473 eV Total energy + Delta-G solvation = -4456.458825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.33255 -50.30510 -41.48626 -40.88001 -39.11220 -37.97523 -36.14885 -34.18342 -32.49395 -31.86661 -31.30965 -29.68171 -28.42811 -27.13877 -25.07052 -24.10751 -23.66474 -21.54497 -20.94804 -19.95177 -19.25448 -18.93453 -18.61206 -17.61097 -17.51265 -17.18604 -17.16252 -16.87016 -16.62072 -16.51593 -16.46321 -16.26663 -15.90599 -15.60128 -14.97873 -14.75748 -14.74134 -14.22694 -13.79929 -13.55947 -13.52272 -13.43441 -13.29317 -13.23801 -12.84541 -12.59964 -12.39774 -12.35419 -12.28980 -12.16159 -11.98801 -11.36583 -11.24155 -10.67315 -10.39587 -10.12503 -9.66083 -9.63538 -8.28069 -6.45742 -0.40244 -0.30299 1.24375 1.43338 1.43702 1.52357 1.81778 1.89035 2.09453 2.37142 2.63506 2.97470 3.07655 3.21404 3.59960 3.62225 3.72200 3.88897 4.05490 4.11902 4.23900 4.31806 4.44450 4.47308 4.52850 4.57515 4.64771 4.66310 4.82712 4.84762 4.92925 5.00821 5.16619 5.24108 5.32292 5.39827 5.72783 5.99287 6.07192 6.41027 6.62389 6.87163 7.26728 7.35271 8.77700 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024537 B = 0.003357 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.840100 B = 8338.596541 C = 8584.179293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.302 6.302 3 C 0.215 3.785 4 C -0.183 4.183 5 C 0.192 3.808 6 F -0.126 7.126 7 C -0.249 4.249 8 C 0.567 3.433 9 O -0.586 6.586 10 N -0.599 5.599 11 C 0.107 3.893 12 C -0.110 4.110 13 C 0.235 3.765 14 O -0.590 6.590 15 C -0.556 4.556 16 H 0.074 0.926 17 C 0.024 3.976 18 N -0.920 5.920 19 Si 0.969 3.031 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.267 1.267 23 C 0.104 3.896 24 C 0.188 3.812 25 F -0.132 7.132 26 C -0.237 4.237 27 H 0.073 0.927 28 H 0.131 0.869 29 H 0.075 0.925 30 H 0.184 0.816 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.377 0.623 36 H 0.271 0.729 37 H 0.041 0.959 38 H 0.051 0.949 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 -22.106 0.020 23.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.214 6.214 3 C 0.167 3.833 4 C -0.202 4.202 5 C 0.171 3.829 6 F -0.105 7.105 7 C -0.254 4.254 8 C 0.355 3.645 9 O -0.468 6.468 10 N -0.330 5.330 11 C -0.014 4.014 12 C -0.148 4.148 13 C 0.194 3.806 14 O -0.399 6.399 15 C -0.594 4.594 16 H 0.092 0.908 17 C -0.177 4.177 18 N -0.559 5.559 19 Si 0.794 3.206 20 H -0.195 1.195 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.019 4.019 24 C 0.168 3.832 25 F -0.111 7.111 26 C -0.256 4.256 27 H 0.091 0.909 28 H 0.149 0.851 29 H 0.093 0.907 30 H 0.202 0.798 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.228 0.772 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -9.143 -22.397 -0.333 24.194 hybrid contribution 0.835 2.311 -0.533 2.514 sum -8.308 -20.086 -0.865 21.754 Atomic orbital electron populations 1.23649 0.74988 1.06816 1.03271 1.86110 1.24518 1.24158 1.86583 1.18292 0.90748 0.84565 0.89680 1.20334 0.93047 0.96936 1.09924 1.16856 0.76625 0.91776 0.97592 1.91562 1.28641 1.97107 1.93159 1.19690 0.93998 0.93171 1.18565 1.17949 0.78747 0.85145 0.82695 1.90750 1.56628 1.67060 1.32330 1.48903 1.56786 1.21058 1.06217 1.22266 1.00998 0.97682 0.80477 1.22639 1.02612 0.92286 0.97258 1.19831 0.81639 0.90531 0.88567 1.86056 1.32419 1.43597 1.77819 1.21798 1.21883 1.00490 1.15259 0.90791 1.25892 0.97530 0.99921 0.94338 1.69688 1.41532 1.22891 1.21829 0.85433 0.79097 0.77569 0.78495 1.19464 1.21171 1.19172 1.22984 0.95220 0.82009 1.01672 1.17103 0.85851 0.83071 0.97169 1.91570 1.76120 1.50273 1.93102 1.21325 1.03369 0.88679 1.12258 0.90886 0.85112 0.90674 0.79836 0.89238 0.91090 0.88775 0.89205 0.77173 0.91941 0.93991 0.93081 0.79669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.80 113.37 1.11 1.14 16 2 O -0.30 -3.70 10.48 -90.29 -0.95 -4.65 16 3 C 0.22 3.59 6.69 22.61 0.15 3.74 16 4 C -0.18 -3.50 9.94 22.37 0.22 -3.28 16 5 C 0.19 5.32 7.28 22.65 0.16 5.49 16 6 F -0.13 -3.91 16.83 44.97 0.76 -3.15 16 7 C -0.25 -8.47 4.82 -20.01 -0.10 -8.56 16 8 C 0.57 25.57 6.55 86.63 0.57 26.13 16 9 O -0.59 -31.55 17.36 -4.08 -0.07 -31.63 16 10 N -0.60 -26.81 3.34 -814.63 -2.72 -29.53 16 11 C 0.11 3.86 6.50 86.64 0.56 4.42 16 12 C -0.11 -4.31 6.11 31.78 0.19 -4.11 16 13 C 0.23 11.71 0.89 -10.16 -0.01 11.70 16 14 O -0.59 -31.56 13.18 -148.98 -1.96 -33.53 16 15 C -0.56 -29.22 8.25 25.60 0.21 -29.01 16 16 H 0.07 3.70 7.76 -2.91 -0.02 3.67 16 17 C 0.02 1.25 5.30 84.66 0.45 1.70 16 18 N -0.92 -51.22 10.71 21.45 0.23 -50.99 16 19 Si 0.97 42.12 29.54 68.60 2.03 44.15 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 21 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 C 0.10 5.36 5.63 86.85 0.49 5.85 16 24 C 0.19 5.44 7.28 22.65 0.16 5.61 16 25 F -0.13 -4.51 16.83 44.97 0.76 -3.76 16 26 C -0.24 -4.40 8.99 22.37 0.20 -4.20 16 27 H 0.07 0.25 7.65 -2.39 -0.02 0.24 16 28 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.07 0.24 7.65 -2.38 -0.02 0.22 16 30 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.09 3.36 8.01 -2.39 -0.02 3.34 16 34 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.38 21.35 6.93 -74.06 -0.51 20.84 16 36 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 37 H 0.04 2.49 7.64 -2.39 -0.02 2.47 16 38 H 0.05 2.70 8.03 -2.39 -0.02 2.68 16 39 H 0.19 2.14 6.27 -2.91 -0.02 2.12 16 Total: -1.00 -72.39 342.51 3.06 -69.34 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.60 Total: 27.12 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 4.38 Total: 16.63 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -2.49 Total: -80.52 kcal Atomic # 8 Polarization: -66.82 SS G_CDS: -2.98 Total: -69.80 kcal Atomic # 9 Polarization: -8.42 SS G_CDS: 1.51 Total: -6.91 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -72.39 3.06 -69.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646975999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.106 kcal (2) G-P(sol) polarization free energy of solvation -72.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds