Wall clock time and date at job start Tue Mar 31 2020 15:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35712 * 117.00398 * 2 1 4 4 C 1.38931 * 119.87033 * 180.02562 * 3 2 1 5 5 C 1.37967 * 120.13661 * 180.02562 * 4 3 2 6 6 F 1.35102 * 120.06864 * 180.02562 * 5 4 3 7 7 C 1.40055 * 119.86060 * 359.97438 * 5 4 3 8 8 C 1.47314 * 120.13183 * 180.02562 * 7 5 4 9 9 O 1.21609 * 119.99822 * 90.00153 * 8 7 5 10 10 N 1.34780 * 119.99762 * 270.00406 * 8 7 5 11 11 C 1.47024 * 125.64847 * 359.68761 * 10 8 7 12 12 C 1.54327 * 107.26774 * 179.20685 * 11 10 8 13 13 C 1.55155 * 102.94571 * 337.80617 * 12 11 10 14 14 O 1.42904 * 111.00600 * 277.43113 * 13 12 11 15 15 C 1.50695 * 111.00698 * 153.57332 * 13 12 11 16 16 H 1.08007 * 119.99678 * 6.35538 * 15 13 12 17 17 C 1.37878 * 120.00238 * 186.35131 * 15 13 12 18 18 N 1.31508 * 119.99866 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99894 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47139 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47004 * 119.99806 * 19 17 15 22 22 H 1.48497 * 109.47163 * 239.99841 * 19 17 15 23 23 C 1.47426 * 125.64645 * 179.97438 * 10 8 7 24 24 C 1.40057 * 119.73819 * 0.28016 * 7 5 4 25 25 F 1.35101 * 120.06895 * 179.72038 * 24 7 5 26 26 C 1.37963 * 119.86052 * 359.42528 * 24 7 5 27 27 H 1.09005 * 109.47013 * 59.99874 * 1 2 3 28 28 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47349 * 299.99974 * 1 2 3 30 30 H 1.08000 * 119.93245 * 359.97438 * 4 3 2 31 31 H 1.08995 * 109.88316 * 298.62177 * 11 10 8 32 32 H 1.09002 * 109.88101 * 59.79072 * 11 10 8 33 33 H 1.08999 * 110.71564 * 219.44370 * 12 11 10 34 34 H 1.08996 * 110.72159 * 96.17410 * 12 11 10 35 35 H 0.96692 * 114.00320 * 173.64830 * 14 13 12 36 36 H 0.97005 * 120.00309 * 180.02562 * 18 17 15 37 37 H 1.09002 * 110.36518 * 322.69812 * 23 10 8 38 38 H 1.08995 * 110.36673 * 84.90922 * 23 10 8 39 39 H 1.08002 * 119.93055 * 180.29309 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4327 1.2786 -0.0005 5 6 4.0648 2.5050 0.0000 6 9 5.4143 2.5709 -0.0011 7 6 3.3047 3.6813 0.0005 8 6 3.9735 4.9939 0.0005 9 8 4.2491 5.5359 -1.0527 10 7 4.2800 5.5940 1.1678 11 6 3.9995 5.0565 2.5072 12 6 4.5442 6.0735 3.5322 13 6 5.6045 6.8573 2.7145 14 8 6.8461 6.1509 2.6752 15 6 5.7932 8.2469 3.2662 16 1 5.2995 8.5358 4.1823 17 6 6.5962 9.1494 2.6016 18 7 7.1970 8.7977 1.4859 19 14 6.8307 10.8716 3.2859 20 1 6.0533 11.0148 4.5430 21 1 8.2708 11.1010 3.5664 22 1 6.3550 11.8679 2.2928 23 6 4.9465 6.9010 1.3129 24 6 1.9063 3.6048 0.0065 25 9 1.1665 4.7353 0.0127 26 6 1.2857 2.3726 -0.0002 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 4.0177 0.3708 -0.0005 31 1 2.9246 4.9354 2.6404 32 1 4.5014 4.0972 2.6342 33 1 5.0086 5.5608 4.3746 34 1 3.7514 6.7389 3.8739 35 1 7.5088 6.5522 2.0968 36 1 7.7623 9.4325 1.0184 37 1 5.7059 7.0273 0.5411 38 1 4.2154 7.7076 1.2603 39 1 0.2074 2.3124 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646976006.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:08 Heat of formation + Delta-G solvation = -174.902088 kcal Electronic energy + Delta-G solvation = -28545.430421 eV Core-core repulsion = 24089.949091 eV Total energy + Delta-G solvation = -4455.481330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.20654 -49.11059 -40.49492 -39.42415 -37.54924 -36.77717 -34.25585 -32.23250 -31.20468 -30.80557 -29.87144 -28.01618 -27.65865 -25.34447 -23.71154 -23.04999 -22.31533 -19.75621 -19.45609 -19.00052 -17.92839 -17.33152 -16.96633 -16.62667 -16.48790 -16.13118 -15.87268 -15.44414 -15.38364 -15.20500 -14.87147 -14.76132 -14.71763 -14.33408 -13.18042 -13.12759 -13.07775 -12.91072 -12.83575 -12.60395 -12.29794 -11.97105 -11.78167 -11.66776 -11.43615 -11.16395 -11.05573 -10.82902 -10.62839 -10.46211 -10.19933 -9.63113 -9.37894 -9.13435 -8.71248 -8.68762 -8.36996 -7.85552 -6.27671 -4.37590 0.64051 0.67190 2.59356 2.86686 2.96741 3.20231 3.29241 3.32464 3.51224 3.65563 4.05777 4.26576 4.44658 4.55629 4.62971 4.68631 4.71926 4.82329 4.99434 5.06851 5.38817 5.44127 5.54400 5.59299 5.64163 5.71819 5.78309 6.01705 6.11657 6.23115 6.48468 6.69785 6.78320 6.83606 6.92191 7.23006 7.33593 7.73941 8.00780 8.10298 8.55616 8.66863 9.29828 9.38231 10.79471 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024778 B = 0.003353 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.785596 B = 8349.238442 C = 8553.830705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.303 6.303 3 C 0.196 3.804 4 C -0.201 4.201 5 C 0.205 3.795 6 F -0.110 7.110 7 C -0.219 4.219 8 C 0.572 3.428 9 O -0.532 6.532 10 N -0.595 5.595 11 C 0.104 3.896 12 C -0.116 4.116 13 C 0.249 3.751 14 O -0.581 6.581 15 C -0.537 4.537 16 H 0.068 0.932 17 C 0.071 3.929 18 N -0.892 5.892 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.094 3.906 24 C 0.203 3.797 25 F -0.117 7.117 26 C -0.260 4.260 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.157 0.843 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.381 0.619 36 H 0.270 0.730 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.229 -16.446 -1.245 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.215 6.215 3 C 0.149 3.851 4 C -0.221 4.221 5 C 0.185 3.815 6 F -0.088 7.088 7 C -0.225 4.225 8 C 0.357 3.643 9 O -0.410 6.410 10 N -0.326 5.326 11 C -0.020 4.020 12 C -0.154 4.154 13 C 0.208 3.792 14 O -0.390 6.390 15 C -0.575 4.575 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.530 5.530 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.026 4.026 24 C 0.182 3.818 25 F -0.095 7.095 26 C -0.279 4.279 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.081 0.919 30 H 0.174 0.826 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.231 0.769 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.189 -16.645 -1.583 21.296 hybrid contribution 0.226 1.648 -0.155 1.671 sum -12.963 -14.997 -1.738 19.899 Atomic orbital electron populations 1.23224 0.77356 1.04639 1.02080 1.86074 1.22209 1.25676 1.87586 1.18277 0.90987 0.83979 0.91846 1.20149 0.92349 0.97612 1.11946 1.16774 0.77398 0.91438 0.95930 1.91630 1.27469 1.96981 1.92690 1.19986 0.92936 0.95295 1.14247 1.17173 0.79739 0.83676 0.83717 1.90806 1.54417 1.65250 1.30541 1.48733 1.57078 1.22243 1.04554 1.22035 0.98773 0.98150 0.83000 1.22618 0.98731 0.96971 0.97078 1.19623 0.81530 0.89697 0.88306 1.86111 1.25647 1.55955 1.71264 1.21480 1.30160 0.95994 1.09908 0.91409 1.25090 0.94548 0.99295 0.94343 1.69725 1.30768 1.36369 1.16152 0.86342 0.78081 0.83354 0.79079 1.19584 1.20750 1.20787 1.23371 0.96279 0.80529 1.02459 1.16832 0.86603 0.82206 0.96158 1.91588 1.75960 1.49059 1.92853 1.21051 1.01657 0.90390 1.14839 0.91999 0.87593 0.91938 0.82580 0.92752 0.92157 0.90530 0.90236 0.76869 0.92012 0.89285 0.91795 0.83018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.80 101.05 0.99 1.09 16 2 O -0.30 -2.60 10.48 -18.84 -0.20 -2.80 16 3 C 0.20 2.03 6.69 -39.06 -0.26 1.77 16 4 C -0.20 -2.32 9.94 -39.42 -0.39 -2.71 16 5 C 0.21 3.09 7.28 -39.00 -0.28 2.80 16 6 F -0.11 -1.86 16.83 2.25 0.04 -1.82 16 7 C -0.22 -3.72 4.82 -104.84 -0.50 -4.23 16 8 C 0.57 12.34 6.55 -12.57 -0.08 12.25 16 9 O -0.53 -13.41 17.37 5.27 0.09 -13.32 16 10 N -0.59 -12.87 3.33 -171.84 -0.57 -13.44 16 11 C 0.10 1.91 6.47 -3.06 -0.02 1.89 16 12 C -0.12 -2.32 6.13 -24.90 -0.15 -2.47 16 13 C 0.25 6.05 0.87 -89.64 -0.08 5.97 16 14 O -0.58 -14.87 13.16 -35.23 -0.46 -15.34 16 15 C -0.54 -13.94 8.27 -34.44 -0.28 -14.23 16 16 H 0.07 1.72 7.79 -52.48 -0.41 1.32 16 17 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 18 N -0.89 -23.91 10.69 55.43 0.59 -23.31 16 19 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C 0.09 2.32 5.38 -2.54 -0.01 2.30 16 24 C 0.20 2.90 7.28 -39.00 -0.28 2.61 16 25 F -0.12 -1.80 16.83 2.25 0.04 -1.76 16 26 C -0.26 -2.74 8.99 -39.42 -0.35 -3.10 16 27 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 28 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.24 7.65 -51.93 -0.40 -0.15 16 30 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 35 H 0.38 10.03 7.57 45.56 0.34 10.38 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.09 2.45 7.33 -51.93 -0.38 2.07 16 38 H 0.06 1.61 8.03 -51.93 -0.42 1.19 16 39 H 0.15 1.14 6.27 -52.49 -0.33 0.81 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -31.19 342.56 -5.80 -36.99 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -3.65 Total: 8.57 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -1.82 Total: 5.71 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.02 Total: -36.75 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.57 Total: -31.45 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.08 Total: -3.59 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.19 -5.80 -36.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646976006.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.912 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds