Wall clock time and date at job start Tue Mar 31 2020 15:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35712 * 117.00398 * 2 1 4 4 C 1.38931 * 119.87033 * 180.02562 * 3 2 1 5 5 C 1.37967 * 120.13661 * 180.02562 * 4 3 2 6 6 F 1.35102 * 120.06864 * 180.02562 * 5 4 3 7 7 C 1.40055 * 119.86060 * 359.97438 * 5 4 3 8 8 C 1.47314 * 120.13183 * 180.02562 * 7 5 4 9 9 O 1.21609 * 119.99822 * 90.00153 * 8 7 5 10 10 N 1.34780 * 119.99762 * 270.00406 * 8 7 5 11 11 C 1.47024 * 125.64847 * 359.68761 * 10 8 7 12 12 C 1.54327 * 107.26774 * 179.20685 * 11 10 8 13 13 C 1.55155 * 102.94571 * 337.80617 * 12 11 10 14 14 O 1.42904 * 111.00600 * 277.43113 * 13 12 11 15 15 C 1.50695 * 111.00698 * 153.57332 * 13 12 11 16 16 H 1.08007 * 119.99678 * 6.35538 * 15 13 12 17 17 C 1.37878 * 120.00238 * 186.35131 * 15 13 12 18 18 N 1.31508 * 119.99866 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99894 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47139 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47004 * 119.99806 * 19 17 15 22 22 H 1.48497 * 109.47163 * 239.99841 * 19 17 15 23 23 C 1.47426 * 125.64645 * 179.97438 * 10 8 7 24 24 C 1.40057 * 119.73819 * 0.28016 * 7 5 4 25 25 F 1.35101 * 120.06895 * 179.72038 * 24 7 5 26 26 C 1.37963 * 119.86052 * 359.42528 * 24 7 5 27 27 H 1.09005 * 109.47013 * 59.99874 * 1 2 3 28 28 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47349 * 299.99974 * 1 2 3 30 30 H 1.08000 * 119.93245 * 359.97438 * 4 3 2 31 31 H 1.08995 * 109.88316 * 298.62177 * 11 10 8 32 32 H 1.09002 * 109.88101 * 59.79072 * 11 10 8 33 33 H 1.08999 * 110.71564 * 219.44370 * 12 11 10 34 34 H 1.08996 * 110.72159 * 96.17410 * 12 11 10 35 35 H 0.96692 * 114.00320 * 173.64830 * 14 13 12 36 36 H 0.97005 * 120.00309 * 180.02562 * 18 17 15 37 37 H 1.09002 * 110.36518 * 322.69812 * 23 10 8 38 38 H 1.08995 * 110.36673 * 84.90922 * 23 10 8 39 39 H 1.08002 * 119.93055 * 180.29309 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4327 1.2786 -0.0005 5 6 4.0648 2.5050 0.0000 6 9 5.4143 2.5709 -0.0011 7 6 3.3047 3.6813 0.0005 8 6 3.9735 4.9939 0.0005 9 8 4.2491 5.5359 -1.0527 10 7 4.2800 5.5940 1.1678 11 6 3.9995 5.0565 2.5072 12 6 4.5442 6.0735 3.5322 13 6 5.6045 6.8573 2.7145 14 8 6.8461 6.1509 2.6752 15 6 5.7932 8.2469 3.2662 16 1 5.2995 8.5358 4.1823 17 6 6.5962 9.1494 2.6016 18 7 7.1970 8.7977 1.4859 19 14 6.8307 10.8716 3.2859 20 1 6.0533 11.0148 4.5430 21 1 8.2708 11.1010 3.5664 22 1 6.3550 11.8679 2.2928 23 6 4.9465 6.9010 1.3129 24 6 1.9063 3.6048 0.0065 25 9 1.1665 4.7353 0.0127 26 6 1.2857 2.3726 -0.0002 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 4.0177 0.3708 -0.0005 31 1 2.9246 4.9354 2.6404 32 1 4.5014 4.0972 2.6342 33 1 5.0086 5.5608 4.3746 34 1 3.7514 6.7389 3.8739 35 1 7.5088 6.5522 2.0968 36 1 7.7623 9.4325 1.0184 37 1 5.7059 7.0273 0.5411 38 1 4.2154 7.7076 1.2603 39 1 0.2074 2.3124 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646976006.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:07 Heat of formation + Delta-G solvation = -197.392796 kcal Electronic energy + Delta-G solvation = -28546.405692 eV Core-core repulsion = 24089.949091 eV Total energy + Delta-G solvation = -4456.456600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.33169 -50.30413 -41.49419 -40.89230 -39.12351 -37.97456 -36.13059 -34.26192 -32.48408 -31.86411 -31.30927 -29.63760 -28.42204 -27.14033 -25.07940 -24.10407 -23.67038 -21.57075 -20.94433 -19.95025 -19.20017 -18.93167 -18.60260 -17.61915 -17.50512 -17.19340 -17.17689 -16.85735 -16.62032 -16.52048 -16.47282 -16.28338 -15.91467 -15.59482 -14.96520 -14.79550 -14.72451 -14.22965 -13.79337 -13.56785 -13.53961 -13.41350 -13.28833 -13.22896 -12.88589 -12.59437 -12.39965 -12.38550 -12.22716 -12.15201 -11.98121 -11.33285 -11.23234 -10.70014 -10.36086 -10.12481 -9.65863 -9.63843 -8.26585 -6.44316 -0.40072 -0.30277 1.24549 1.40487 1.43484 1.54775 1.82493 1.89442 2.09694 2.37453 2.63112 2.99176 3.08147 3.22373 3.60125 3.62628 3.71341 3.89297 4.02838 4.11744 4.24087 4.31893 4.45532 4.47407 4.52810 4.57247 4.65322 4.67147 4.82592 4.85422 4.96512 5.00905 5.17270 5.24144 5.31959 5.41461 5.72470 6.02883 6.08146 6.42220 6.64385 6.87670 7.23556 7.32332 8.79087 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024778 B = 0.003353 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.785596 B = 8349.238442 C = 8553.830705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.303 6.303 3 C 0.216 3.784 4 C -0.186 4.186 5 C 0.187 3.813 6 F -0.130 7.130 7 C -0.249 4.249 8 C 0.567 3.433 9 O -0.585 6.585 10 N -0.600 5.600 11 C 0.107 3.893 12 C -0.109 4.109 13 C 0.234 3.766 14 O -0.586 6.586 15 C -0.554 4.554 16 H 0.072 0.928 17 C 0.024 3.976 18 N -0.917 5.917 19 Si 0.967 3.033 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.283 1.283 23 C 0.107 3.893 24 C 0.193 3.807 25 F -0.128 7.128 26 C -0.235 4.235 27 H 0.074 0.926 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.180 0.820 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.373 0.627 36 H 0.269 0.731 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.920 -18.833 0.085 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.215 6.215 3 C 0.167 3.833 4 C -0.205 4.205 5 C 0.167 3.833 6 F -0.109 7.109 7 C -0.254 4.254 8 C 0.355 3.645 9 O -0.467 6.467 10 N -0.330 5.330 11 C -0.015 4.015 12 C -0.147 4.147 13 C 0.193 3.807 14 O -0.394 6.394 15 C -0.592 4.592 16 H 0.090 0.910 17 C -0.177 4.177 18 N -0.556 5.556 19 Si 0.793 3.207 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.209 1.209 23 C -0.016 4.016 24 C 0.173 3.827 25 F -0.107 7.107 26 C -0.254 4.254 27 H 0.092 0.908 28 H 0.148 0.852 29 H 0.095 0.905 30 H 0.198 0.802 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.222 0.778 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -15.915 -19.075 -0.213 24.843 hybrid contribution 0.949 2.235 -0.600 2.501 sum -14.965 -16.840 -0.813 22.544 Atomic orbital electron populations 1.23659 0.74897 1.06814 1.03369 1.86116 1.24615 1.24211 1.86578 1.18274 0.90571 0.84745 0.89667 1.20323 0.93285 0.96813 1.10112 1.16966 0.76583 0.92127 0.97613 1.91574 1.29026 1.97128 1.93145 1.19692 0.94172 0.93009 1.18562 1.17937 0.78845 0.85035 0.82691 1.90751 1.56520 1.67145 1.32268 1.48822 1.56689 1.21331 1.06190 1.22180 1.00902 0.97783 0.80633 1.22632 0.97661 0.97132 0.97263 1.19863 0.81801 0.90221 0.88796 1.86102 1.26120 1.56173 1.70973 1.21803 1.30279 0.97000 1.10100 0.90972 1.25876 0.94371 1.02897 0.94535 1.69858 1.31215 1.37380 1.17139 0.85361 0.77938 0.78867 0.78584 1.18536 1.20591 1.20938 1.22941 0.95012 0.81969 1.01631 1.16988 0.85479 0.83132 0.97136 1.91558 1.75952 1.50026 1.93117 1.21330 1.03407 0.88549 1.12109 0.90772 0.85238 0.90490 0.80235 0.89403 0.91081 0.89168 0.88792 0.77847 0.92167 0.93407 0.93421 0.79300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.80 113.37 1.11 1.14 16 2 O -0.30 -3.72 10.48 -90.33 -0.95 -4.67 16 3 C 0.22 3.59 6.69 22.60 0.15 3.74 16 4 C -0.19 -3.80 9.94 22.37 0.22 -3.57 16 5 C 0.19 5.54 7.28 22.65 0.16 5.71 16 6 F -0.13 -4.54 16.83 44.97 0.76 -3.79 16 7 C -0.25 -8.45 4.82 -20.01 -0.10 -8.55 16 8 C 0.57 25.54 6.55 86.63 0.57 26.10 16 9 O -0.59 -31.50 17.37 -4.06 -0.07 -31.57 16 10 N -0.60 -26.79 3.33 -815.82 -2.71 -29.50 16 11 C 0.11 3.84 6.47 86.73 0.56 4.40 16 12 C -0.11 -4.26 6.13 31.78 0.19 -4.06 16 13 C 0.23 11.60 0.87 -10.16 -0.01 11.59 16 14 O -0.59 -30.98 13.16 -148.98 -1.96 -32.94 16 15 C -0.55 -29.13 8.27 25.60 0.21 -28.92 16 16 H 0.07 3.65 7.79 -2.91 -0.02 3.62 16 17 C 0.02 1.28 5.29 84.66 0.45 1.73 16 18 N -0.92 -51.21 10.69 21.45 0.23 -50.98 16 19 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 20 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.11 5.52 5.38 86.85 0.47 5.99 16 24 C 0.19 5.21 7.28 22.65 0.16 5.37 16 25 F -0.13 -3.85 16.83 44.97 0.76 -3.09 16 26 C -0.23 -4.05 8.99 22.37 0.20 -3.85 16 27 H 0.07 0.19 7.65 -2.38 -0.02 0.17 16 28 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.08 0.16 7.65 -2.38 -0.02 0.15 16 30 H 0.18 2.77 8.06 -2.91 -0.02 2.74 16 31 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.09 3.36 8.03 -2.39 -0.02 3.34 16 35 H 0.37 20.71 7.57 -74.06 -0.56 20.15 16 36 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 37 H 0.05 2.83 7.33 -2.39 -0.02 2.81 16 38 H 0.05 2.55 8.03 -2.39 -0.02 2.53 16 39 H 0.19 1.80 6.27 -2.91 -0.02 1.78 16 Total: -1.00 -72.56 342.56 2.99 -69.57 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.56 Total: 25.80 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 4.36 Total: 16.81 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -2.48 Total: -80.48 kcal Atomic # 8 Polarization: -66.20 SS G_CDS: -2.98 Total: -69.18 kcal Atomic # 9 Polarization: -8.39 SS G_CDS: 1.51 Total: -6.88 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -72.56 2.99 -69.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646976006.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.824 kcal (2) G-P(sol) polarization free energy of solvation -72.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds