Wall clock time and date at job start Tue Mar 31 2020 15:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35624 * 125.67540 * 2 1 4 4 C 1.35518 * 108.85349 * 180.30208 * 3 2 1 5 5 Cl 1.73602 * 126.07545 * 179.70132 * 4 3 2 6 6 C 1.39885 * 107.84849 * 359.57377 * 4 3 2 7 7 C 1.37633 * 125.67500 * 180.02562 * 2 1 3 8 8 C 1.46666 * 126.22830 * 359.97438 * 7 2 1 9 9 O 1.21700 * 119.99603 * 27.11230 * 8 7 2 10 10 N 1.34779 * 120.00342 * 207.10995 * 8 7 2 11 11 C 1.47149 * 120.98097 * 7.16338 * 10 8 7 12 12 C 1.53296 * 108.37956 * 230.51100 * 11 10 8 13 13 O 1.42956 * 109.22289 * 307.69308 * 12 11 10 14 14 C 1.42967 * 114.16775 * 62.58761 * 13 12 11 15 15 H 1.08998 * 109.51091 * 57.34089 * 14 13 12 16 16 C 1.53000 * 109.51466 * 177.44546 * 14 13 12 17 17 N 1.46499 * 109.46817 * 299.99650 * 16 14 13 18 18 C 1.36942 * 120.00009 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99611 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99994 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99788 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47052 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46690 * 120.00189 * 22 20 18 25 25 H 1.48501 * 109.47071 * 239.99740 * 22 20 18 26 26 C 1.47157 * 120.97991 * 186.87740 * 10 8 7 27 27 H 1.08995 * 109.47464 * 95.38343 * 1 2 3 28 28 H 1.09001 * 109.46984 * 215.38285 * 1 2 3 29 29 H 1.09003 * 109.47340 * 335.37761 * 1 2 3 30 30 H 1.08000 * 125.57431 * 0.03437 * 3 2 1 31 31 H 1.08003 * 126.45356 * 180.15638 * 6 4 3 32 32 H 1.09001 * 109.68041 * 350.23257 * 11 10 8 33 33 H 1.09000 * 109.68393 * 110.78555 * 11 10 8 34 34 H 1.08998 * 109.51654 * 67.62438 * 12 11 10 35 35 H 1.09006 * 109.50631 * 187.77436 * 12 11 10 36 36 H 1.08997 * 109.46913 * 59.99749 * 16 14 13 37 37 H 1.08992 * 109.46952 * 180.02562 * 16 14 13 38 38 H 0.97001 * 120.00226 * 0.02562 * 17 16 14 39 39 H 0.97004 * 119.99903 * 179.97438 * 21 20 18 40 40 H 1.09006 * 109.67686 * 249.21345 * 26 10 8 41 41 H 1.08997 * 109.68383 * 9.76202 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2559 1.1017 0.0000 4 6 3.5531 0.7095 -0.0068 5 17 4.9376 1.7568 -0.0168 6 6 3.5782 -0.6891 -0.0013 7 6 2.2676 -1.1180 -0.0005 8 6 1.8121 -2.5122 -0.0006 9 8 0.7311 -2.7990 -0.4806 10 7 2.5905 -3.4756 0.5308 11 6 3.8262 -3.1376 1.2546 12 6 4.9679 -3.9871 0.6848 13 8 4.5816 -5.3634 0.6965 14 6 3.4488 -5.6604 -0.1235 15 1 3.6525 -5.3557 -1.1501 16 6 3.1684 -7.1639 -0.0828 17 7 4.3369 -7.8923 -0.5829 18 6 4.3180 -9.2603 -0.6406 19 1 3.4414 -9.8023 -0.3176 20 6 5.4250 -9.9504 -1.1150 21 7 6.4931 -9.2899 -1.5090 22 14 5.3994 -11.8167 -1.1929 23 1 4.0920 -12.3149 -0.6952 24 1 5.5938 -12.2561 -2.5981 25 1 6.4919 -12.3624 -0.3479 26 6 2.2263 -4.8963 0.4097 27 1 -0.3634 -0.0964 -1.0231 28 1 -0.3633 -0.8379 0.5951 29 1 -0.3634 0.9342 0.4282 30 1 1.9088 2.1244 0.0005 31 1 4.4583 -1.3151 -0.0020 32 1 4.0530 -2.0799 1.1199 33 1 3.7014 -3.3545 2.3155 34 1 5.1772 -3.6763 -0.3388 35 1 5.8606 -3.8543 1.2961 36 1 2.9630 -7.4675 0.9438 37 1 2.3050 -7.3896 -0.7085 38 1 5.1241 -7.4055 -0.8733 39 1 7.2668 -9.7722 -1.8402 40 1 1.9431 -5.2872 1.3871 41 1 1.3931 -5.0038 -0.2847 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755004650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:16 Heat of formation + Delta-G solvation = 5.577065 kcal Electronic energy + Delta-G solvation = -25627.531315 eV Core-core repulsion = 21763.965580 eV Total energy + Delta-G solvation = -3863.565735 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.00739 -39.99012 -38.20289 -36.70997 -35.28664 -34.43184 -33.16450 -32.24585 -30.51114 -29.64293 -28.13859 -26.89024 -25.66656 -23.58691 -23.18502 -21.72092 -21.25809 -20.64422 -19.47094 -17.80009 -17.10103 -16.80294 -16.45234 -16.04713 -15.81257 -15.23609 -15.02013 -14.78958 -14.54405 -14.36113 -14.16245 -13.74179 -13.54512 -13.25281 -13.11463 -13.05261 -12.78158 -12.69022 -12.39645 -11.91659 -11.76306 -11.51762 -11.14003 -11.00517 -10.88128 -10.79616 -10.54141 -10.17144 -9.96436 -9.89673 -9.67596 -9.02627 -8.85366 -8.74026 -8.49241 -6.87183 -5.71037 -2.99752 1.05398 1.73443 2.03877 2.31889 2.90505 2.95267 3.46970 3.52194 3.54718 3.96037 4.14163 4.36024 4.48224 4.59142 4.72886 4.76143 4.82461 4.94078 5.06770 5.11334 5.12224 5.20378 5.30338 5.36527 5.55378 5.61639 5.64246 5.74449 5.86423 5.93624 5.99536 6.23693 6.28573 6.35543 6.56052 6.58792 6.69905 7.10826 7.46254 7.74102 7.84410 8.47053 9.58919 10.16069 10.52096 11.51770 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.021492 B = 0.002582 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.509900 B =10840.464593 C =11795.548190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.404 5.404 3 C 0.030 3.970 4 C -0.120 4.120 5 Cl -0.047 7.047 6 C -0.142 4.142 7 C -0.027 4.027 8 C 0.590 3.410 9 O -0.542 6.542 10 N -0.597 5.597 11 C 0.038 3.962 12 C 0.045 3.955 13 O -0.355 6.355 14 C 0.073 3.927 15 H 0.064 0.936 16 C 0.164 3.836 17 N -0.726 5.726 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.089 3.911 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.179 0.821 31 H 0.166 0.834 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.107 0.893 36 H 0.029 0.971 37 H 0.036 0.964 38 H 0.388 0.612 39 H 0.254 0.746 40 H 0.081 0.919 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.288 25.945 5.921 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.077 5.077 3 C -0.107 4.107 4 C -0.153 4.153 5 Cl -0.018 7.018 6 C -0.168 4.168 7 C -0.141 4.141 8 C 0.378 3.622 9 O -0.420 6.420 10 N -0.330 5.330 11 C -0.084 4.084 12 C -0.033 4.033 13 O -0.273 6.273 14 C 0.014 3.986 15 H 0.082 0.918 16 C 0.035 3.965 17 N -0.370 5.370 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.034 4.034 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.196 0.804 31 H 0.183 0.817 32 H 0.138 0.862 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.222 0.778 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.128 25.519 5.794 28.060 hybrid contribution 0.407 -0.449 -0.271 0.664 sum -9.721 25.070 5.523 27.450 Atomic orbital electron populations 1.22237 0.75052 1.04617 1.04830 1.43786 1.07136 1.04516 1.52229 1.21715 0.88920 0.92114 1.07938 1.19931 0.88163 0.91350 1.15814 1.98339 1.40449 1.65402 1.97640 1.21476 0.95535 0.93178 1.06568 1.20033 0.89770 0.87912 1.16394 1.16887 0.83900 0.83215 0.78180 1.90828 1.21205 1.82907 1.47083 1.47802 1.24416 1.06525 1.54232 1.23349 0.84582 1.03309 0.97157 1.22933 0.96293 0.83030 1.01063 1.88174 1.47631 1.23485 1.68000 1.22897 0.84689 0.97138 0.93837 0.91768 1.20620 0.92064 0.86001 0.97784 1.42219 1.14232 1.03605 1.76988 1.19268 0.99463 0.82676 1.35574 0.91105 1.24745 0.96327 0.97885 1.02047 1.69688 1.04872 1.34056 1.49337 0.86113 0.77210 0.85665 0.77173 1.20563 1.21920 1.21875 1.22502 0.99218 0.78268 1.03373 0.89632 0.88905 0.89282 0.80382 0.81651 0.86239 0.90237 0.92697 0.87542 0.95338 0.94684 0.77791 0.93612 0.90054 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.30 59.85 0.62 1.10 16 2 N -0.40 -3.65 3.16 -120.20 -0.38 -4.03 16 3 C 0.03 0.23 11.35 -16.85 -0.19 0.04 16 4 C -0.12 -1.10 6.66 -39.94 -0.27 -1.36 16 5 Cl -0.05 -0.40 29.30 -51.86 -1.52 -1.92 16 6 C -0.14 -1.41 8.63 -39.09 -0.34 -1.75 16 7 C -0.03 -0.30 6.49 -81.98 -0.53 -0.83 16 8 C 0.59 7.89 7.45 -12.86 -0.10 7.80 16 9 O -0.54 -8.53 15.17 5.19 0.08 -8.46 16 10 N -0.60 -7.67 3.01 -173.56 -0.52 -8.20 16 11 C 0.04 0.40 6.06 -3.53 -0.02 0.38 16 12 C 0.04 0.56 6.94 37.31 0.26 0.82 16 13 O -0.36 -6.18 10.13 -35.23 -0.36 -6.53 16 14 C 0.07 1.25 2.88 -26.36 -0.08 1.17 16 15 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 16 C 0.16 3.35 5.96 -4.04 -0.02 3.32 16 17 N -0.73 -18.98 5.50 -59.91 -0.33 -19.31 16 18 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 22 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 C 0.09 1.26 5.93 -3.31 -0.02 1.24 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.72 7.42 -51.93 -0.39 0.33 16 29 H 0.09 0.29 8.12 -51.93 -0.42 -0.13 16 30 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.17 1.47 6.00 -52.48 -0.31 1.16 16 32 H 0.12 1.06 3.11 -51.93 -0.16 0.90 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.39 10.79 7.54 -40.82 -0.31 10.48 16 39 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.10 1.48 7.14 -51.93 -0.37 1.11 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -34.70 353.01 -8.26 -42.95 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.31 Total: 6.02 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -0.93 Total: 4.44 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.51 Total: -59.53 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.28 Total: -14.99 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.52 Total: -1.92 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.70 -8.26 -42.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755004650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.532 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds