Wall clock time and date at job start Tue Mar 31 2020 15:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35624 * 125.67540 * 2 1 4 4 C 1.35518 * 108.85349 * 180.30208 * 3 2 1 5 5 Cl 1.73602 * 126.07545 * 179.70132 * 4 3 2 6 6 C 1.39885 * 107.84849 * 359.57377 * 4 3 2 7 7 C 1.37633 * 125.67500 * 180.02562 * 2 1 3 8 8 C 1.46666 * 126.22830 * 359.97438 * 7 2 1 9 9 O 1.21700 * 119.99603 * 27.11230 * 8 7 2 10 10 N 1.34779 * 120.00342 * 207.10995 * 8 7 2 11 11 C 1.47149 * 120.98097 * 7.16338 * 10 8 7 12 12 C 1.53296 * 108.37956 * 230.51100 * 11 10 8 13 13 O 1.42956 * 109.22289 * 307.69308 * 12 11 10 14 14 C 1.42967 * 114.16775 * 62.58761 * 13 12 11 15 15 H 1.08998 * 109.51091 * 57.34089 * 14 13 12 16 16 C 1.53000 * 109.51466 * 177.44546 * 14 13 12 17 17 N 1.46499 * 109.46817 * 299.99650 * 16 14 13 18 18 C 1.36942 * 120.00009 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99611 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99994 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99788 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47052 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46690 * 120.00189 * 22 20 18 25 25 H 1.48501 * 109.47071 * 239.99740 * 22 20 18 26 26 C 1.47157 * 120.97991 * 186.87740 * 10 8 7 27 27 H 1.08995 * 109.47464 * 95.38343 * 1 2 3 28 28 H 1.09001 * 109.46984 * 215.38285 * 1 2 3 29 29 H 1.09003 * 109.47340 * 335.37761 * 1 2 3 30 30 H 1.08000 * 125.57431 * 0.03437 * 3 2 1 31 31 H 1.08003 * 126.45356 * 180.15638 * 6 4 3 32 32 H 1.09001 * 109.68041 * 350.23257 * 11 10 8 33 33 H 1.09000 * 109.68393 * 110.78555 * 11 10 8 34 34 H 1.08998 * 109.51654 * 67.62438 * 12 11 10 35 35 H 1.09006 * 109.50631 * 187.77436 * 12 11 10 36 36 H 1.08997 * 109.46913 * 59.99749 * 16 14 13 37 37 H 1.08992 * 109.46952 * 180.02562 * 16 14 13 38 38 H 0.97001 * 120.00226 * 0.02562 * 17 16 14 39 39 H 0.97004 * 119.99903 * 179.97438 * 21 20 18 40 40 H 1.09006 * 109.67686 * 249.21345 * 26 10 8 41 41 H 1.08997 * 109.68383 * 9.76202 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2559 1.1017 0.0000 4 6 3.5531 0.7095 -0.0068 5 17 4.9376 1.7568 -0.0168 6 6 3.5782 -0.6891 -0.0013 7 6 2.2676 -1.1180 -0.0005 8 6 1.8121 -2.5122 -0.0006 9 8 0.7311 -2.7990 -0.4806 10 7 2.5905 -3.4756 0.5308 11 6 3.8262 -3.1376 1.2546 12 6 4.9679 -3.9871 0.6848 13 8 4.5816 -5.3634 0.6965 14 6 3.4488 -5.6604 -0.1235 15 1 3.6525 -5.3557 -1.1501 16 6 3.1684 -7.1639 -0.0828 17 7 4.3369 -7.8923 -0.5829 18 6 4.3180 -9.2603 -0.6406 19 1 3.4414 -9.8023 -0.3176 20 6 5.4250 -9.9504 -1.1150 21 7 6.4931 -9.2899 -1.5090 22 14 5.3994 -11.8167 -1.1929 23 1 4.0920 -12.3149 -0.6952 24 1 5.5938 -12.2561 -2.5981 25 1 6.4919 -12.3624 -0.3479 26 6 2.2263 -4.8963 0.4097 27 1 -0.3634 -0.0964 -1.0231 28 1 -0.3633 -0.8379 0.5951 29 1 -0.3634 0.9342 0.4282 30 1 1.9088 2.1244 0.0005 31 1 4.4583 -1.3151 -0.0020 32 1 4.0530 -2.0799 1.1199 33 1 3.7014 -3.3545 2.3155 34 1 5.1772 -3.6763 -0.3388 35 1 5.8606 -3.8543 1.2961 36 1 2.9630 -7.4675 0.9438 37 1 2.3050 -7.3896 -0.7085 38 1 5.1241 -7.4055 -0.8733 39 1 7.2668 -9.7722 -1.8402 40 1 1.9431 -5.2872 1.3871 41 1 1.3931 -5.0038 -0.2847 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755004650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:15 Heat of formation + Delta-G solvation = -18.049181 kcal Electronic energy + Delta-G solvation = -25628.555826 eV Core-core repulsion = 21763.965580 eV Total energy + Delta-G solvation = -3864.590246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.75752 -41.03554 -39.36192 -37.36984 -36.74412 -35.92505 -34.09229 -33.66701 -32.07816 -30.58901 -29.38310 -27.48594 -27.20759 -24.99768 -24.48658 -23.02397 -22.17411 -21.71692 -20.30980 -19.24053 -18.56921 -17.88149 -17.58025 -17.01773 -16.85626 -16.44600 -16.25239 -15.96490 -15.67842 -15.52131 -15.10409 -14.99961 -14.81411 -14.31038 -14.25881 -14.19202 -13.88110 -13.80541 -13.33821 -13.25569 -12.83512 -12.76124 -12.54735 -12.40522 -12.26169 -12.01748 -11.87333 -11.85675 -11.65958 -11.27250 -11.03160 -10.95641 -9.78417 -9.71582 -9.28072 -8.99845 -7.93106 -5.22627 0.25045 1.07565 1.35848 1.47226 1.49087 1.49931 1.60096 1.97382 2.17522 2.57178 2.74974 3.28703 3.40802 3.52812 3.82467 3.86787 3.92360 3.98276 4.04256 4.10818 4.17847 4.32187 4.33979 4.41302 4.46439 4.48991 4.62413 4.66862 4.71629 4.78258 4.89575 4.95634 5.08471 5.14406 5.33893 5.49677 5.62979 5.97405 6.12984 6.22304 6.28863 6.84018 7.34635 8.08629 8.33374 9.30797 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.021492 B = 0.002582 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.509900 B =10840.464593 C =11795.548190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.406 5.406 3 C 0.052 3.948 4 C -0.138 4.138 5 Cl -0.043 7.043 6 C -0.138 4.138 7 C -0.057 4.057 8 C 0.588 3.412 9 O -0.573 6.573 10 N -0.600 5.600 11 C 0.046 3.954 12 C 0.039 3.961 13 O -0.385 6.385 14 C 0.086 3.914 15 H 0.050 0.950 16 C 0.160 3.840 17 N -0.740 5.740 18 C -0.246 4.246 19 H 0.078 0.922 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.977 3.023 23 H -0.265 1.265 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.100 3.900 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.127 0.873 30 H 0.215 0.785 31 H 0.171 0.829 32 H 0.141 0.859 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.129 0.871 36 H 0.031 0.969 37 H 0.044 0.956 38 H 0.376 0.624 39 H 0.251 0.749 40 H 0.091 0.909 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.083 27.654 6.776 30.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.078 5.078 3 C -0.085 4.085 4 C -0.171 4.171 5 Cl -0.015 7.015 6 C -0.165 4.165 7 C -0.171 4.171 8 C 0.379 3.621 9 O -0.455 6.455 10 N -0.332 5.332 11 C -0.075 4.075 12 C -0.038 4.038 13 O -0.304 6.304 14 C 0.027 3.973 15 H 0.068 0.932 16 C 0.033 3.967 17 N -0.383 5.383 18 C -0.377 4.377 19 H 0.096 0.904 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.805 3.195 23 H -0.189 1.189 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.023 4.023 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.145 0.855 30 H 0.232 0.768 31 H 0.188 0.812 32 H 0.158 0.842 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.147 0.853 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.208 0.792 39 H 0.060 0.940 40 H 0.109 0.891 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.959 27.243 6.677 30.114 hybrid contribution 0.642 -0.839 -0.521 1.178 sum -10.317 26.404 6.156 29.009 Atomic orbital electron populations 1.22404 0.73775 1.06042 1.04772 1.44028 1.08016 1.04179 1.51562 1.22315 0.88285 0.93117 1.04804 1.20040 0.88980 0.91102 1.16948 1.98341 1.40380 1.65084 1.97686 1.21590 0.95272 0.93937 1.05652 1.19765 0.90638 0.87376 1.19348 1.17204 0.83413 0.84167 0.77333 1.90800 1.22629 1.83561 1.48468 1.47846 1.25114 1.05825 1.54376 1.23415 0.82879 1.03998 0.97168 1.23212 0.97825 0.80997 1.01804 1.88111 1.47802 1.26558 1.67929 1.22579 0.86093 0.95153 0.93436 0.93173 1.20770 0.90416 0.88008 0.97470 1.42414 1.15361 1.03276 1.77268 1.19699 0.99550 0.84036 1.34443 0.90367 1.25619 0.96166 1.02650 1.02513 1.69851 1.05521 1.35764 1.50846 0.85027 0.77631 0.79980 0.76813 1.18901 1.21986 1.21982 1.22239 0.97440 0.79163 1.03493 0.89874 0.90468 0.85450 0.76801 0.81158 0.84215 0.89234 0.92776 0.85331 0.95070 0.93787 0.79248 0.94022 0.89121 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 10.30 127.77 1.32 2.10 16 2 N -0.41 -6.47 3.16 -534.19 -1.69 -8.16 16 3 C 0.05 0.65 11.35 83.48 0.95 1.60 16 4 C -0.14 -2.21 6.66 22.04 0.15 -2.06 16 5 Cl -0.04 -0.66 29.30 -2.72 -0.08 -0.74 16 6 C -0.14 -2.53 8.63 22.59 0.19 -2.34 16 7 C -0.06 -1.21 6.49 40.35 0.26 -0.95 16 8 C 0.59 15.56 7.45 86.44 0.64 16.20 16 9 O -0.57 -18.24 15.17 -4.35 -0.07 -18.31 16 10 N -0.60 -15.11 3.01 -821.23 -2.48 -17.59 16 11 C 0.05 0.93 6.06 86.35 0.52 1.45 16 12 C 0.04 0.93 6.94 72.08 0.50 1.43 16 13 O -0.39 -13.46 10.13 -148.98 -1.51 -14.97 16 14 C 0.09 2.98 2.88 30.83 0.09 3.07 16 15 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 16 C 0.16 6.64 5.96 86.38 0.51 7.15 16 17 N -0.74 -39.43 5.50 -343.47 -1.89 -41.32 16 18 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 19 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 20 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 21 N -0.97 -60.92 13.06 21.65 0.28 -60.63 16 22 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 23 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 26 C 0.10 2.82 5.93 86.49 0.51 3.34 16 27 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 1.13 7.42 -2.39 -0.02 1.11 16 29 H 0.13 0.39 8.12 -2.39 -0.02 0.37 16 30 H 0.22 0.96 8.06 -2.91 -0.02 0.94 16 31 H 0.17 2.78 6.00 -2.91 -0.02 2.76 16 32 H 0.14 2.24 3.11 -2.39 -0.01 2.23 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.13 2.50 8.14 -2.38 -0.02 2.48 16 36 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.38 21.53 7.54 -92.71 -0.70 20.83 16 39 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 41 H 0.10 2.85 7.14 -2.39 -0.02 2.83 16 Total: -1.00 -75.53 353.01 1.93 -73.59 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.37 Total: 25.45 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 6.96 Total: 13.61 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -5.77 Total: -127.70 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.58 Total: -33.28 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -75.53 1.93 -73.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755004650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.546 kcal (2) G-P(sol) polarization free energy of solvation -75.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds