Wall clock time and date at job start Tue Mar 31 2020 15:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36932 * 120.00109 * 2 1 4 4 H 1.08006 * 119.99812 * 202.71060 * 3 2 1 5 5 C 1.38810 * 119.99923 * 22.71667 * 3 2 1 6 6 N 1.31613 * 120.00120 * 11.49868 * 5 3 2 7 7 Si 1.86803 * 119.99819 * 191.50472 * 5 3 2 8 8 H 1.48499 * 109.47117 * 89.99576 * 7 5 3 9 9 H 1.48501 * 109.46828 * 209.99583 * 7 5 3 10 10 H 1.48497 * 109.47089 * 329.99537 * 7 5 3 11 11 C 1.46503 * 119.99782 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47234 * 269.99444 * 11 2 1 13 13 O 1.42907 * 109.47091 * 65.00522 * 12 11 2 14 14 C 1.42893 * 114.00098 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47075 * 179.97438 * 14 13 12 16 16 N 1.46504 * 109.47230 * 64.99905 * 15 14 13 17 17 C 1.34774 * 119.99861 * 179.97438 * 16 15 14 18 18 O 1.21520 * 120.00285 * 0.02562 * 17 16 15 19 19 C 1.48119 * 119.99442 * 180.02562 * 17 16 15 20 20 C 1.39347 * 119.70443 * 180.02562 * 19 17 16 21 21 C 1.38519 * 119.07576 * 179.97438 * 20 19 17 22 22 C 1.38770 * 118.48124 * 0.02562 * 21 20 19 23 23 Cl 1.73597 * 120.33936 * 179.97438 * 22 21 20 24 24 C 1.38723 * 119.32030 * 0.02562 * 22 21 20 25 25 N 1.31490 * 120.88141 * 0.02562 * 24 22 21 26 26 H 1.09006 * 109.46788 * 273.91546 * 1 2 3 27 27 H 1.08998 * 109.47206 * 33.91178 * 1 2 3 28 28 H 1.08998 * 109.47544 * 153.92000 * 1 2 3 29 29 H 0.97001 * 119.99860 * 180.02562 * 6 5 3 30 30 H 1.09003 * 109.46828 * 149.99709 * 11 2 1 31 31 H 1.09003 * 109.46881 * 30.00026 * 11 2 1 32 32 H 1.09000 * 109.47720 * 305.00225 * 12 11 2 33 33 H 1.09006 * 109.47213 * 185.00015 * 12 11 2 34 34 H 1.09000 * 109.47287 * 59.99912 * 14 13 12 35 35 H 1.08999 * 109.47003 * 299.99557 * 14 13 12 36 36 H 1.08996 * 109.47422 * 304.99721 * 15 14 13 37 37 H 1.09001 * 109.47443 * 184.99813 * 15 14 13 38 38 H 0.96995 * 119.99720 * 0.02562 * 16 15 14 39 39 H 1.08006 * 120.46002 * 0.24998 * 20 19 17 40 40 H 1.08000 * 120.75994 * 180.02562 * 21 20 19 41 41 H 1.08003 * 119.55741 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1669 1.2221 -0.3611 5 6 1.5364 2.3414 0.4642 6 7 0.3919 2.2652 1.1096 7 14 2.3355 4.0045 0.1729 8 1 1.8560 4.5651 -1.1160 9 1 1.9747 4.9275 1.2789 10 1 3.8108 3.8431 0.1242 11 6 2.1974 -1.2688 -0.0006 12 6 2.4526 -1.7110 1.4416 13 8 1.2061 -1.9945 2.0805 14 6 1.3326 -2.4191 3.4390 15 6 -0.0565 -2.6924 4.0194 16 7 -0.6661 -3.8231 3.3151 17 6 -1.8986 -4.2462 3.6595 18 8 -2.5043 -3.6894 4.5538 19 6 -2.5147 -5.3898 2.9478 20 6 -3.7894 -5.8218 3.3084 21 6 -4.3534 -6.8921 2.6338 22 6 -3.6219 -7.4952 1.6204 23 17 -4.2819 -8.8405 0.7440 24 6 -2.3576 -7.0126 1.3156 25 7 -1.8468 -5.9952 1.9736 26 1 -0.3633 0.0702 1.0253 27 1 -0.3633 0.8528 -0.5733 28 1 -0.3634 -0.9230 -0.4518 29 1 -0.0369 3.0727 1.4336 30 1 3.1499 -1.1382 -0.5144 31 1 1.6083 -2.0282 -0.5148 32 1 2.9643 -0.9140 1.9811 33 1 3.0733 -2.6071 1.4425 34 1 1.8213 -1.6370 4.0201 35 1 1.9298 -3.3299 3.4809 36 1 -0.6819 -1.8081 3.8969 37 1 0.0329 -2.9301 5.0794 38 1 -0.1825 -4.2677 2.6015 39 1 -4.3320 -5.3261 4.0999 40 1 -5.3397 -7.2492 2.8907 41 1 -1.7851 -7.4788 0.5273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755545550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:20 Heat of formation + Delta-G solvation = -24.337626 kcal Electronic energy + Delta-G solvation = -24849.507194 eV Core-core repulsion = 20984.644260 eV Total energy + Delta-G solvation = -3864.862934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.95056 -39.17403 -37.59906 -37.10894 -35.44193 -34.50388 -32.99558 -31.80975 -31.37083 -29.46940 -27.80143 -25.68059 -25.00813 -24.12702 -22.98189 -22.31339 -20.90495 -20.29973 -18.48795 -17.39141 -16.92184 -16.80360 -16.10788 -16.01388 -15.38819 -15.30635 -15.07658 -14.58281 -14.34184 -14.17169 -13.76780 -13.64237 -13.32975 -13.15281 -12.88252 -12.68249 -12.31105 -12.12438 -11.78522 -11.52941 -11.37559 -10.88232 -10.82793 -10.75222 -10.51452 -10.47194 -10.37957 -10.03385 -9.92229 -9.87865 -9.76967 -9.46082 -9.01088 -8.98618 -8.45787 -6.64057 -5.62458 -3.08918 0.08509 0.66873 1.47703 2.46148 2.99214 3.41781 3.46847 3.47707 3.49189 3.79223 4.17409 4.18305 4.34232 4.47108 4.56481 4.69995 5.13823 5.21832 5.31606 5.34857 5.44290 5.48425 5.60222 5.67566 5.72907 5.92003 6.02030 6.11363 6.23367 6.27056 6.41322 6.57721 6.80711 6.99741 7.13868 7.53876 7.55047 7.81553 7.86063 8.01331 8.10676 8.49194 9.33669 9.97514 10.48204 11.41517 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.002359 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.440075 B =11864.401537 C =12275.082963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.596 5.596 3 C -0.256 4.256 4 H 0.066 0.934 5 C 0.002 3.998 6 N -0.902 5.902 7 Si 0.902 3.098 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.152 3.848 12 C 0.043 3.957 13 O -0.366 6.366 14 C 0.050 3.950 15 C 0.122 3.878 16 N -0.694 5.694 17 C 0.568 3.432 18 O -0.534 6.534 19 C 0.089 3.911 20 C -0.100 4.100 21 C -0.072 4.072 22 C -0.074 4.074 23 Cl -0.048 7.048 24 C 0.116 3.884 25 N -0.440 5.440 26 H 0.032 0.968 27 H 0.037 0.963 28 H -0.007 1.007 29 H 0.251 0.749 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.025 0.975 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.415 0.585 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.349 -22.886 3.770 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.319 5.319 3 C -0.386 4.386 4 H 0.084 0.916 5 C -0.197 4.197 6 N -0.547 5.547 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.024 3.976 12 C -0.036 4.036 13 O -0.285 6.285 14 C -0.027 4.027 15 C -0.001 4.001 16 N -0.345 5.345 17 C 0.351 3.649 18 O -0.411 6.411 19 C -0.049 4.049 20 C -0.121 4.121 21 C -0.098 4.098 22 C -0.103 4.103 23 Cl -0.019 7.019 24 C -0.045 4.045 25 N -0.151 5.151 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.011 0.989 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.251 0.749 39 H 0.177 0.823 40 H 0.171 0.829 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.260 -22.065 4.113 23.301 hybrid contribution -0.006 0.306 -0.105 0.323 sum -6.266 -21.759 4.007 22.995 Atomic orbital electron populations 1.20684 0.82180 0.94786 0.99317 1.43879 1.02127 1.00226 1.85641 1.19204 0.98157 0.85667 1.35591 0.91583 1.25035 0.97804 0.98372 0.98468 1.70097 1.18072 1.26814 1.39731 0.86297 0.78714 0.84444 0.77296 1.21586 1.21832 1.20630 1.20893 0.96393 0.88895 0.91383 1.23510 0.85029 0.96882 0.98214 1.88021 1.30496 1.87261 1.22713 1.22596 0.95346 0.98551 0.86249 1.21513 0.93822 0.89383 0.95418 1.45770 1.16741 1.33562 1.38459 1.17725 0.81797 0.82483 0.82870 1.90805 1.62419 1.56999 1.30883 1.21392 0.92860 0.96332 0.94341 1.22172 0.94822 0.95268 0.99812 1.21583 1.00522 0.94460 0.93258 1.22375 0.96547 0.93919 0.97480 1.98404 1.85409 1.43376 1.74739 1.22855 0.91366 0.92188 0.98067 1.67741 1.35195 1.06916 1.05282 0.94987 0.94465 0.98874 0.93904 0.92394 0.93799 0.93317 0.95679 0.91896 0.93698 0.89701 0.90180 0.74891 0.82306 0.82922 0.80985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.58 8.61 59.85 0.52 5.09 16 2 N -0.60 -15.39 2.89 -181.12 -0.52 -15.91 16 3 C -0.26 -7.13 9.67 -15.06 -0.15 -7.28 16 4 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 5 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 6 N -0.90 -26.93 10.62 55.49 0.59 -26.35 16 7 Si 0.90 22.14 29.57 -169.99 -5.03 17.12 16 8 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.15 3.16 6.11 -4.04 -0.02 3.13 16 12 C 0.04 0.80 6.28 37.15 0.23 1.04 16 13 O -0.37 -6.93 9.85 -35.23 -0.35 -7.27 16 14 C 0.05 0.74 6.07 37.16 0.23 0.96 16 15 C 0.12 1.74 6.06 -4.04 -0.02 1.72 16 16 N -0.69 -9.64 5.49 -61.16 -0.34 -9.98 16 17 C 0.57 8.18 7.81 -12.21 -0.10 8.08 16 18 O -0.53 -9.01 16.32 5.35 0.09 -8.92 16 19 C 0.09 1.07 6.75 -83.01 -0.56 0.51 16 20 C -0.10 -0.96 9.63 -39.07 -0.38 -1.34 16 21 C -0.07 -0.54 9.97 -39.28 -0.39 -0.94 16 22 C -0.07 -0.59 6.35 -39.21 -0.25 -0.84 16 23 Cl -0.05 -0.33 28.99 -51.86 -1.50 -1.84 16 24 C 0.12 1.02 10.98 -17.52 -0.19 0.83 16 25 N -0.44 -4.93 9.54 -9.77 -0.09 -5.02 16 26 H 0.03 0.91 7.43 -51.93 -0.39 0.53 16 27 H 0.04 1.04 7.20 -51.93 -0.37 0.66 16 28 H -0.01 -0.17 7.85 -51.93 -0.41 -0.58 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 31 H 0.04 0.85 7.87 -51.93 -0.41 0.44 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.41 5.44 7.80 -40.82 -0.32 5.13 16 39 H 0.16 1.40 7.64 -52.48 -0.40 1.00 16 40 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -33.14 368.93 -8.41 -41.54 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.64 Total: 0.14 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -1.17 Total: 10.92 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.36 Total: -57.25 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.26 Total: -16.20 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.12 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.14 -8.41 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755545550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.207 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds