Wall clock time and date at job start Tue Mar 31 2020 15:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36932 * 120.00109 * 2 1 4 4 H 1.08006 * 119.99812 * 202.71060 * 3 2 1 5 5 C 1.38810 * 119.99923 * 22.71667 * 3 2 1 6 6 N 1.31613 * 120.00120 * 11.49868 * 5 3 2 7 7 Si 1.86803 * 119.99819 * 191.50472 * 5 3 2 8 8 H 1.48499 * 109.47117 * 89.99576 * 7 5 3 9 9 H 1.48501 * 109.46828 * 209.99583 * 7 5 3 10 10 H 1.48497 * 109.47089 * 329.99537 * 7 5 3 11 11 C 1.46503 * 119.99782 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47234 * 269.99444 * 11 2 1 13 13 O 1.42907 * 109.47091 * 65.00522 * 12 11 2 14 14 C 1.42893 * 114.00098 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47075 * 179.97438 * 14 13 12 16 16 N 1.46504 * 109.47230 * 64.99905 * 15 14 13 17 17 C 1.34774 * 119.99861 * 179.97438 * 16 15 14 18 18 O 1.21520 * 120.00285 * 0.02562 * 17 16 15 19 19 C 1.48119 * 119.99442 * 180.02562 * 17 16 15 20 20 C 1.39347 * 119.70443 * 180.02562 * 19 17 16 21 21 C 1.38519 * 119.07576 * 179.97438 * 20 19 17 22 22 C 1.38770 * 118.48124 * 0.02562 * 21 20 19 23 23 Cl 1.73597 * 120.33936 * 179.97438 * 22 21 20 24 24 C 1.38723 * 119.32030 * 0.02562 * 22 21 20 25 25 N 1.31490 * 120.88141 * 0.02562 * 24 22 21 26 26 H 1.09006 * 109.46788 * 273.91546 * 1 2 3 27 27 H 1.08998 * 109.47206 * 33.91178 * 1 2 3 28 28 H 1.08998 * 109.47544 * 153.92000 * 1 2 3 29 29 H 0.97001 * 119.99860 * 180.02562 * 6 5 3 30 30 H 1.09003 * 109.46828 * 149.99709 * 11 2 1 31 31 H 1.09003 * 109.46881 * 30.00026 * 11 2 1 32 32 H 1.09000 * 109.47720 * 305.00225 * 12 11 2 33 33 H 1.09006 * 109.47213 * 185.00015 * 12 11 2 34 34 H 1.09000 * 109.47287 * 59.99912 * 14 13 12 35 35 H 1.08999 * 109.47003 * 299.99557 * 14 13 12 36 36 H 1.08996 * 109.47422 * 304.99721 * 15 14 13 37 37 H 1.09001 * 109.47443 * 184.99813 * 15 14 13 38 38 H 0.96995 * 119.99720 * 0.02562 * 16 15 14 39 39 H 1.08006 * 120.46002 * 0.24998 * 20 19 17 40 40 H 1.08000 * 120.75994 * 180.02562 * 21 20 19 41 41 H 1.08003 * 119.55741 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1669 1.2221 -0.3611 5 6 1.5364 2.3414 0.4642 6 7 0.3919 2.2652 1.1096 7 14 2.3355 4.0045 0.1729 8 1 1.8560 4.5651 -1.1160 9 1 1.9747 4.9275 1.2789 10 1 3.8108 3.8431 0.1242 11 6 2.1974 -1.2688 -0.0006 12 6 2.4526 -1.7110 1.4416 13 8 1.2061 -1.9945 2.0805 14 6 1.3326 -2.4191 3.4390 15 6 -0.0565 -2.6924 4.0194 16 7 -0.6661 -3.8231 3.3151 17 6 -1.8986 -4.2462 3.6595 18 8 -2.5043 -3.6894 4.5538 19 6 -2.5147 -5.3898 2.9478 20 6 -3.7894 -5.8218 3.3084 21 6 -4.3534 -6.8921 2.6338 22 6 -3.6219 -7.4952 1.6204 23 17 -4.2819 -8.8405 0.7440 24 6 -2.3576 -7.0126 1.3156 25 7 -1.8468 -5.9952 1.9736 26 1 -0.3633 0.0702 1.0253 27 1 -0.3633 0.8528 -0.5733 28 1 -0.3634 -0.9230 -0.4518 29 1 -0.0369 3.0727 1.4336 30 1 3.1499 -1.1382 -0.5144 31 1 1.6083 -2.0282 -0.5148 32 1 2.9643 -0.9140 1.9811 33 1 3.0733 -2.6071 1.4425 34 1 1.8213 -1.6370 4.0201 35 1 1.9298 -3.3299 3.4809 36 1 -0.6819 -1.8081 3.8969 37 1 0.0329 -2.9301 5.0794 38 1 -0.1825 -4.2677 2.6015 39 1 -4.3320 -5.3261 4.0999 40 1 -5.3397 -7.2492 2.8907 41 1 -1.7851 -7.4788 0.5273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755545550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:17 Heat of formation + Delta-G solvation = -47.065353 kcal Electronic energy + Delta-G solvation = -24850.492742 eV Core-core repulsion = 20984.644260 eV Total energy + Delta-G solvation = -3865.848482 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.78640 -40.20062 -39.01350 -37.73598 -37.22251 -35.82667 -33.75467 -33.37779 -32.55313 -30.84547 -29.37339 -27.81423 -25.90234 -24.86982 -24.77383 -23.41504 -22.13358 -21.94132 -19.41783 -18.76854 -18.19761 -17.69672 -17.53881 -17.18163 -16.79807 -16.44783 -16.29770 -15.99299 -15.43472 -15.29112 -15.19901 -15.02520 -14.77024 -14.32741 -14.07258 -13.81999 -13.63825 -13.16056 -13.06693 -13.01955 -12.71665 -12.53025 -12.48575 -12.38702 -12.32279 -12.01306 -11.78781 -11.66997 -11.51288 -11.05916 -10.76932 -10.61130 -10.37418 -10.31824 -10.02933 -8.72669 -7.76915 -5.25367 -0.69209 0.00250 0.84506 1.46948 1.48579 1.51001 1.57013 1.98132 2.53369 2.61840 2.86060 2.99951 3.35996 3.57094 3.61773 3.76055 3.77653 3.90979 3.97052 4.17982 4.44863 4.53151 4.56926 4.59692 4.61418 4.67560 4.69993 4.78814 4.88063 4.94313 5.01111 5.21580 5.23174 5.30132 5.37380 5.67144 5.82574 6.25590 6.36450 6.47798 6.58299 7.02535 7.19650 7.93012 8.39209 9.26257 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.002359 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.440075 B =11864.401537 C =12275.082963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.196 3.804 2 N -0.613 5.613 3 C -0.260 4.260 4 H 0.075 0.925 5 C -0.058 4.058 6 N -0.937 5.937 7 Si 0.968 3.032 8 H -0.288 1.288 9 H -0.299 1.299 10 H -0.265 1.265 11 C 0.145 3.855 12 C 0.052 3.948 13 O -0.395 6.395 14 C 0.053 3.947 15 C 0.127 3.873 16 N -0.692 5.692 17 C 0.564 3.436 18 O -0.569 6.569 19 C 0.064 3.936 20 C -0.101 4.101 21 C -0.063 4.063 22 C -0.068 4.068 23 Cl -0.033 7.033 24 C 0.112 3.888 25 N -0.456 5.456 26 H -0.001 1.001 27 H 0.008 0.992 28 H 0.016 0.984 29 H 0.244 0.756 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.099 0.901 38 H 0.419 0.581 39 H 0.162 0.838 40 H 0.183 0.817 41 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.581 -25.096 2.972 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.336 5.336 3 C -0.390 4.390 4 H 0.093 0.907 5 C -0.253 4.253 6 N -0.584 5.584 7 Si 0.797 3.203 8 H -0.215 1.215 9 H -0.226 1.226 10 H -0.190 1.190 11 C 0.019 3.981 12 C -0.027 4.027 13 O -0.314 6.314 14 C -0.024 4.024 15 C 0.004 3.996 16 N -0.342 5.342 17 C 0.349 3.651 18 O -0.448 6.448 19 C -0.073 4.073 20 C -0.122 4.122 21 C -0.089 4.089 22 C -0.098 4.098 23 Cl -0.004 7.004 24 C -0.049 4.049 25 N -0.168 5.168 26 H 0.018 0.982 27 H 0.027 0.973 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.256 0.744 39 H 0.180 0.820 40 H 0.200 0.800 41 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.444 -24.316 3.296 25.135 hybrid contribution -0.274 0.808 0.075 0.857 sum -5.718 -23.508 3.371 24.427 Atomic orbital electron populations 1.20303 0.83055 0.94554 0.96979 1.44099 1.01989 1.01671 1.85862 1.19592 0.98418 0.86641 1.34367 0.90688 1.25833 0.98586 1.01924 0.98911 1.70290 1.19697 1.27093 1.41356 0.85250 0.78556 0.79956 0.76575 1.21518 1.22563 1.18962 1.21141 0.96779 0.87036 0.93178 1.23251 0.85299 0.97962 0.96166 1.87976 1.30999 1.87686 1.24760 1.22715 0.95737 0.99779 0.84189 1.21414 0.93184 0.88404 0.96647 1.45749 1.16843 1.33171 1.38453 1.18158 0.81574 0.82854 0.82512 1.90771 1.63164 1.58384 1.32481 1.21114 0.93975 0.96608 0.95637 1.22262 0.94060 0.95814 1.00053 1.21881 1.01461 0.93220 0.92292 1.22460 0.96250 0.93881 0.97170 1.98417 1.85126 1.42508 1.74343 1.23253 0.92004 0.91531 0.98116 1.67664 1.35793 1.07835 1.05502 0.98239 0.97279 0.96536 0.94687 0.90816 0.92306 0.95841 0.91250 0.92204 0.90267 0.93255 0.88264 0.74362 0.82047 0.79956 0.78751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.48 8.61 127.77 1.10 11.58 16 2 N -0.61 -31.54 2.89 -726.94 -2.10 -33.64 16 3 C -0.26 -14.41 9.67 84.03 0.81 -13.60 16 4 H 0.08 3.95 7.85 -2.91 -0.02 3.93 16 5 C -0.06 -3.32 5.12 84.86 0.43 -2.88 16 6 N -0.94 -57.67 10.62 21.65 0.23 -57.44 16 7 Si 0.97 45.95 29.57 68.60 2.03 47.98 16 8 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 9 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 C 0.14 5.74 6.11 86.38 0.53 6.27 16 12 C 0.05 1.85 6.28 71.98 0.45 2.30 16 13 O -0.39 -14.69 9.85 -148.98 -1.47 -16.16 16 14 C 0.05 1.50 6.07 71.98 0.44 1.94 16 15 C 0.13 3.70 6.06 86.38 0.52 4.22 16 16 N -0.69 -19.35 5.49 -465.71 -2.56 -21.91 16 17 C 0.56 16.65 7.81 86.87 0.68 17.32 16 18 O -0.57 -19.94 16.32 -3.78 -0.06 -20.01 16 19 C 0.06 1.52 6.75 41.90 0.28 1.80 16 20 C -0.10 -1.87 9.63 22.60 0.22 -1.65 16 21 C -0.06 -0.82 9.97 22.46 0.22 -0.59 16 22 C -0.07 -0.93 6.35 22.51 0.14 -0.79 16 23 Cl -0.03 -0.37 28.99 -2.72 -0.08 -0.45 16 24 C 0.11 1.76 10.98 84.86 0.93 2.69 16 25 N -0.46 -9.80 9.54 -184.81 -1.76 -11.57 16 26 H 0.00 -0.04 7.43 -2.38 -0.02 -0.06 16 27 H 0.01 0.49 7.20 -2.39 -0.02 0.48 16 28 H 0.02 0.77 7.85 -2.39 -0.02 0.75 16 29 H 0.24 14.68 8.31 -92.71 -0.77 13.90 16 30 H 0.07 2.67 8.03 -2.39 -0.02 2.65 16 31 H 0.06 2.15 7.87 -2.39 -0.02 2.13 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.42 10.81 7.80 -92.71 -0.72 10.08 16 39 H 0.16 2.83 7.64 -2.91 -0.02 2.81 16 40 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 41 H 0.20 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -73.18 368.93 1.32 -71.85 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.33 Total: 12.72 kcal Atomic # 6 Polarization: 21.86 SS G_CDS: 6.77 Total: 28.63 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -6.19 Total: -124.56 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.53 Total: -36.16 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.08 Total: -0.45 kcal Total: -73.18 1.32 -71.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755545550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.788 kcal (2) G-P(sol) polarization free energy of solvation -73.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds