Wall clock time and date at job start Tue Mar 31 2020 15:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 114.00157 * 2 1 4 4 C 1.52992 * 109.47290 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47038 * 65.70402 * 4 3 2 6 6 C 1.36933 * 120.00367 * 267.90838 * 5 4 3 7 7 H 1.08003 * 120.00173 * 142.25796 * 6 5 4 8 8 C 1.38817 * 120.00175 * 322.26001 * 6 5 4 9 9 N 1.31613 * 120.00302 * 156.38236 * 8 6 5 10 10 Si 1.86808 * 119.99463 * 336.38027 * 8 6 5 11 11 H 1.48503 * 109.46779 * 95.50924 * 10 8 6 12 12 H 1.48501 * 109.46995 * 215.50872 * 10 8 6 13 13 H 1.48501 * 109.47210 * 335.51061 * 10 8 6 14 14 C 1.46506 * 119.99971 * 87.91004 * 5 4 3 15 15 C 1.53002 * 109.46945 * 270.00151 * 14 5 4 16 16 N 1.46495 * 109.47277 * 179.97438 * 15 14 5 17 17 C 1.34778 * 120.00340 * 179.97438 * 16 15 14 18 18 O 1.21523 * 119.99519 * 0.02562 * 17 16 15 19 19 C 1.48066 * 120.00275 * 179.97438 * 17 16 15 20 20 C 1.39875 * 120.93138 * 359.97438 * 19 17 16 21 21 C 1.38085 * 119.01624 * 180.02562 * 20 19 17 22 22 N 1.31842 * 120.94084 * 359.97438 * 21 20 19 23 23 C 1.31758 * 122.07422 * 359.70385 * 22 21 20 24 24 C 1.38354 * 120.86984 * 0.59120 * 23 22 21 25 25 Cl 1.73601 * 120.51932 * 179.70080 * 24 23 22 26 26 H 1.08998 * 109.46902 * 300.00310 * 1 2 3 27 27 H 1.09008 * 109.46794 * 59.99919 * 1 2 3 28 28 H 1.08996 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47205 * 59.99910 * 3 2 1 30 30 H 1.09006 * 109.47210 * 300.00148 * 3 2 1 31 31 H 1.09003 * 109.47204 * 305.70687 * 4 3 2 32 32 H 1.09000 * 109.47471 * 185.70918 * 4 3 2 33 33 H 0.97002 * 120.00065 * 179.97438 * 9 8 6 34 34 H 1.08994 * 109.47364 * 150.00086 * 14 5 4 35 35 H 1.08994 * 109.46969 * 29.99980 * 14 5 4 36 36 H 1.09001 * 109.47513 * 59.99670 * 15 14 5 37 37 H 1.09005 * 109.46780 * 300.00037 * 15 14 5 38 38 H 0.97000 * 120.00087 * 0.02562 * 16 15 14 39 39 H 1.08001 * 120.48855 * 0.02562 * 20 19 17 40 40 H 1.08001 * 119.52654 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.56375 * 180.32265 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9779 0.5793 -1.2579 6 6 4.1403 -0.7775 -1.3453 7 1 3.8663 -1.2970 -2.2517 8 6 4.6572 -1.4855 -0.2689 9 7 4.3985 -2.7695 -0.1404 10 14 5.7200 -0.6155 0.9973 11 1 4.8779 -0.1964 2.1465 12 1 6.7810 -1.5397 1.4721 13 1 6.3460 0.5813 0.3799 14 6 4.2466 1.4257 -2.4232 15 6 2.9660 1.5827 -3.2456 16 7 3.2344 2.4295 -4.4105 17 6 2.2463 2.7071 -5.2840 18 8 1.1325 2.2553 -5.1049 19 6 2.5175 3.5635 -6.4610 20 6 3.7917 4.0951 -6.6851 21 6 4.0004 4.8892 -7.7953 22 7 3.0198 5.1480 -8.6376 23 6 1.8063 4.6634 -8.4688 24 6 1.5064 3.8634 -7.3806 25 17 -0.0976 3.2361 -7.1630 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8500 0.5581 0.8354 32 1 3.9784 2.1753 0.1029 33 1 4.7600 -3.2642 0.6116 34 1 5.0188 0.9632 -3.0379 35 1 4.5866 2.4060 -2.0895 36 1 2.1937 2.0452 -2.6309 37 1 2.6260 0.6022 -3.5793 38 1 4.1236 2.7898 -4.5536 39 1 4.6004 3.8874 -6.0000 40 1 4.9810 5.3043 -7.9761 41 1 1.0344 4.8973 -9.1872 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755840739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:28 Heat of formation + Delta-G solvation = -6.496050 kcal Electronic energy + Delta-G solvation = -25455.285182 eV Core-core repulsion = 21591.195917 eV Total energy + Delta-G solvation = -3864.089265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.88277 -39.14549 -37.50307 -36.76845 -35.95361 -34.45163 -33.03380 -31.64285 -31.43096 -29.73772 -27.93241 -25.67186 -25.25690 -24.03134 -23.46103 -22.11867 -20.96192 -20.48264 -18.46067 -17.14692 -16.89073 -16.50275 -16.06213 -15.69235 -15.45559 -15.43662 -15.16448 -14.69386 -14.48548 -14.46476 -14.16699 -13.74021 -13.51966 -13.30343 -12.65920 -12.54750 -12.46535 -12.17669 -11.90703 -11.74866 -11.39857 -11.19951 -11.02173 -10.74640 -10.67467 -10.46432 -10.30760 -10.22875 -9.79927 -9.59963 -9.56606 -9.34203 -8.99839 -8.73514 -8.46595 -6.91224 -5.93331 -3.36017 0.24902 0.48963 1.80931 2.72732 3.01470 3.33059 3.41321 3.46898 3.49794 3.94348 4.19048 4.29568 4.41737 4.55557 4.58567 4.72772 4.93750 5.08812 5.26834 5.36943 5.43322 5.57439 5.62684 5.74225 5.82453 5.90503 5.96225 5.99227 6.07539 6.13055 6.17883 6.28321 6.42702 6.48637 6.71887 6.73837 7.33830 7.47529 7.94357 8.09600 8.15548 8.42222 8.96606 9.74694 10.08449 11.22253 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.003088 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.036561 B = 9064.129082 C =10044.563140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.348 6.348 3 C 0.043 3.957 4 C 0.132 3.868 5 N -0.589 5.589 6 C -0.262 4.262 7 H 0.076 0.924 8 C 0.047 3.953 9 N -0.891 5.891 10 Si 0.871 3.129 11 H -0.286 1.286 12 H -0.302 1.302 13 H -0.271 1.271 14 C 0.139 3.861 15 C 0.095 3.905 16 N -0.714 5.714 17 C 0.545 3.455 18 O -0.507 6.507 19 C -0.077 4.077 20 C -0.130 4.130 21 C 0.097 3.903 22 N -0.458 5.458 23 C 0.108 3.892 24 C -0.046 4.046 25 Cl -0.015 7.015 26 H 0.026 0.974 27 H 0.031 0.969 28 H 0.079 0.921 29 H 0.028 0.972 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.262 0.738 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.396 0.604 39 H 0.150 0.850 40 H 0.169 0.831 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.546 17.067 -12.146 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C -0.037 4.037 4 C 0.006 3.994 5 N -0.311 5.311 6 C -0.390 4.390 7 H 0.094 0.906 8 C -0.154 4.154 9 N -0.531 5.531 10 Si 0.701 3.299 11 H -0.214 1.214 12 H -0.230 1.230 13 H -0.196 1.196 14 C 0.012 3.988 15 C -0.030 4.030 16 N -0.366 5.366 17 C 0.329 3.671 18 O -0.382 6.382 19 C -0.089 4.089 20 C -0.151 4.151 21 C -0.060 4.060 22 N -0.167 5.167 23 C -0.050 4.050 24 C -0.077 4.077 25 Cl 0.014 6.986 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.230 0.770 39 H 0.167 0.833 40 H 0.187 0.813 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.167 16.810 -12.563 21.224 hybrid contribution 0.378 0.220 1.517 1.579 sum -2.790 17.030 -11.046 20.490 Atomic orbital electron populations 1.22653 0.83622 1.01938 0.98394 1.88279 1.17060 1.26396 1.94817 1.23361 0.97284 0.85242 0.97764 1.21394 0.90412 0.96782 0.90825 1.43879 1.76354 1.04262 1.06570 1.18560 1.37594 0.79979 1.02896 0.90636 1.25329 0.97739 0.94783 0.97516 1.69902 1.44051 1.08500 1.30692 0.87023 0.81308 0.79607 0.81919 1.21419 1.22969 1.19583 1.21012 0.93399 0.94480 0.89943 1.22537 1.01249 0.94200 0.84974 1.45994 1.12486 1.52035 1.26110 1.17977 0.85492 0.81281 0.82395 1.90885 1.21770 1.51223 1.74352 1.20469 0.93549 0.98635 0.96245 1.22446 0.96159 0.97219 0.99279 1.22870 0.98601 0.94632 0.89866 1.67687 1.00033 1.20195 1.28804 1.22863 0.94601 0.92822 0.94753 1.22307 0.89339 0.99101 0.96904 1.98443 1.18565 1.84955 1.96592 0.95578 0.95051 0.90283 0.95418 0.94240 0.91483 0.92798 0.92854 0.91790 0.94043 0.91840 0.90726 0.77005 0.83285 0.81348 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.35 -7.80 10.31 -35.23 -0.36 -8.16 16 3 C 0.04 0.83 6.27 37.15 0.23 1.06 16 4 C 0.13 2.74 4.90 -4.05 -0.02 2.72 16 5 N -0.59 -13.09 2.04 -173.24 -0.35 -13.45 16 6 C -0.26 -7.08 9.53 -15.06 -0.14 -7.22 16 7 H 0.08 2.25 8.06 -52.48 -0.42 1.82 16 8 C 0.05 1.34 5.27 -17.43 -0.09 1.25 16 9 N -0.89 -27.09 13.97 55.49 0.78 -26.32 16 10 Si 0.87 21.56 25.15 -169.99 -4.28 17.28 16 11 H -0.29 -6.99 6.66 56.52 0.38 -6.61 16 12 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.14 2.41 5.83 -4.04 -0.02 2.38 16 15 C 0.10 1.58 5.95 -4.04 -0.02 1.56 16 16 N -0.71 -9.23 5.51 -61.18 -0.34 -9.57 16 17 C 0.54 7.78 7.79 -12.23 -0.10 7.68 16 18 O -0.51 -9.10 14.17 5.35 0.08 -9.03 16 19 C -0.08 -0.87 5.91 -104.62 -0.62 -1.49 16 20 C -0.13 -1.04 9.61 -39.03 -0.38 -1.41 16 21 C 0.10 0.72 11.17 -17.60 -0.20 0.53 16 22 N -0.46 -4.30 10.33 -13.27 -0.14 -4.44 16 23 C 0.11 1.01 10.99 -17.54 -0.19 0.81 16 24 C -0.05 -0.52 6.38 -38.91 -0.25 -0.77 16 25 Cl -0.01 -0.19 26.24 -51.86 -1.36 -1.55 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.52 8.14 -51.92 -0.42 0.09 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.72 5.94 -51.93 -0.31 0.41 16 31 H 0.07 1.57 3.50 -51.93 -0.18 1.39 16 32 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 35 H 0.04 0.61 7.91 -51.93 -0.41 0.20 16 36 H 0.06 1.12 6.00 -51.93 -0.31 0.81 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.40 3.70 6.61 -40.82 -0.27 3.43 16 39 H 0.15 0.75 6.54 -52.49 -0.34 0.41 16 40 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -34.42 354.86 -6.51 -40.93 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.20 Total: 0.19 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -0.68 Total: 8.75 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.05 Total: -53.77 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.29 Total: -17.19 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.28 Total: 17.28 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.36 Total: -1.55 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.42 -6.51 -40.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755840739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.437 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds