Wall clock time and date at job start Tue Mar 31 2020 15:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 114.00157 * 2 1 4 4 C 1.52992 * 109.47290 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47038 * 65.70402 * 4 3 2 6 6 C 1.36933 * 120.00367 * 267.90838 * 5 4 3 7 7 H 1.08003 * 120.00173 * 142.25796 * 6 5 4 8 8 C 1.38817 * 120.00175 * 322.26001 * 6 5 4 9 9 N 1.31613 * 120.00302 * 156.38236 * 8 6 5 10 10 Si 1.86808 * 119.99463 * 336.38027 * 8 6 5 11 11 H 1.48503 * 109.46779 * 95.50924 * 10 8 6 12 12 H 1.48501 * 109.46995 * 215.50872 * 10 8 6 13 13 H 1.48501 * 109.47210 * 335.51061 * 10 8 6 14 14 C 1.46506 * 119.99971 * 87.91004 * 5 4 3 15 15 C 1.53002 * 109.46945 * 270.00151 * 14 5 4 16 16 N 1.46495 * 109.47277 * 179.97438 * 15 14 5 17 17 C 1.34778 * 120.00340 * 179.97438 * 16 15 14 18 18 O 1.21523 * 119.99519 * 0.02562 * 17 16 15 19 19 C 1.48066 * 120.00275 * 179.97438 * 17 16 15 20 20 C 1.39875 * 120.93138 * 359.97438 * 19 17 16 21 21 C 1.38085 * 119.01624 * 180.02562 * 20 19 17 22 22 N 1.31842 * 120.94084 * 359.97438 * 21 20 19 23 23 C 1.31758 * 122.07422 * 359.70385 * 22 21 20 24 24 C 1.38354 * 120.86984 * 0.59120 * 23 22 21 25 25 Cl 1.73601 * 120.51932 * 179.70080 * 24 23 22 26 26 H 1.08998 * 109.46902 * 300.00310 * 1 2 3 27 27 H 1.09008 * 109.46794 * 59.99919 * 1 2 3 28 28 H 1.08996 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47205 * 59.99910 * 3 2 1 30 30 H 1.09006 * 109.47210 * 300.00148 * 3 2 1 31 31 H 1.09003 * 109.47204 * 305.70687 * 4 3 2 32 32 H 1.09000 * 109.47471 * 185.70918 * 4 3 2 33 33 H 0.97002 * 120.00065 * 179.97438 * 9 8 6 34 34 H 1.08994 * 109.47364 * 150.00086 * 14 5 4 35 35 H 1.08994 * 109.46969 * 29.99980 * 14 5 4 36 36 H 1.09001 * 109.47513 * 59.99670 * 15 14 5 37 37 H 1.09005 * 109.46780 * 300.00037 * 15 14 5 38 38 H 0.97000 * 120.00087 * 0.02562 * 16 15 14 39 39 H 1.08001 * 120.48855 * 0.02562 * 20 19 17 40 40 H 1.08001 * 119.52654 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.56375 * 180.32265 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9779 0.5793 -1.2579 6 6 4.1403 -0.7775 -1.3453 7 1 3.8663 -1.2970 -2.2517 8 6 4.6572 -1.4855 -0.2689 9 7 4.3985 -2.7695 -0.1404 10 14 5.7200 -0.6155 0.9973 11 1 4.8779 -0.1964 2.1465 12 1 6.7810 -1.5397 1.4721 13 1 6.3460 0.5813 0.3799 14 6 4.2466 1.4257 -2.4232 15 6 2.9660 1.5827 -3.2456 16 7 3.2344 2.4295 -4.4105 17 6 2.2463 2.7071 -5.2840 18 8 1.1325 2.2553 -5.1049 19 6 2.5175 3.5635 -6.4610 20 6 3.7917 4.0951 -6.6851 21 6 4.0004 4.8892 -7.7953 22 7 3.0198 5.1480 -8.6376 23 6 1.8063 4.6634 -8.4688 24 6 1.5064 3.8634 -7.3806 25 17 -0.0976 3.2361 -7.1630 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8500 0.5581 0.8354 32 1 3.9784 2.1753 0.1029 33 1 4.7600 -3.2642 0.6116 34 1 5.0188 0.9632 -3.0379 35 1 4.5866 2.4060 -2.0895 36 1 2.1937 2.0452 -2.6309 37 1 2.6260 0.6022 -3.5793 38 1 4.1236 2.7898 -4.5536 39 1 4.6004 3.8874 -6.0000 40 1 4.9810 5.3043 -7.9761 41 1 1.0344 4.8973 -9.1872 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755840739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:27 Heat of formation + Delta-G solvation = -32.673191 kcal Electronic energy + Delta-G solvation = -25456.420308 eV Core-core repulsion = 21591.195917 eV Total energy + Delta-G solvation = -3865.224391 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.71441 -40.19269 -39.08052 -37.67365 -37.48257 -35.82560 -34.01030 -33.52895 -32.14514 -31.16226 -29.52173 -27.18758 -26.39673 -25.25232 -24.51047 -23.51561 -22.38077 -21.79864 -19.44732 -18.75987 -18.01727 -17.65451 -17.26381 -17.04830 -16.70811 -16.54802 -16.36634 -16.30228 -15.74750 -15.46143 -15.27218 -15.12897 -14.82093 -14.66120 -14.38101 -14.11305 -13.59830 -13.27841 -13.22129 -13.03830 -12.90804 -12.55437 -12.42410 -12.31582 -12.27809 -11.87003 -11.68874 -11.43129 -11.37056 -11.03604 -10.58692 -10.48693 -10.40753 -10.12047 -10.01930 -8.77135 -8.08167 -5.47253 -0.56308 -0.17149 0.98647 1.38464 1.47115 1.58174 1.75559 1.92773 2.52454 2.63253 3.08697 3.11100 3.34722 3.39285 3.52506 3.60948 3.71492 4.05690 4.16401 4.21566 4.35747 4.38794 4.49895 4.51219 4.56080 4.57619 4.62940 4.65378 4.75235 4.76765 4.83590 4.99716 5.13104 5.17546 5.35295 5.40909 6.01686 6.26939 6.43669 6.54118 6.67924 7.04815 7.11451 7.71345 8.08913 9.12163 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.003088 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.036561 B = 9064.129082 C =10044.563140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.042 3.958 4 C 0.123 3.877 5 N -0.601 5.601 6 C -0.241 4.241 7 H 0.027 0.973 8 C -0.014 4.014 9 N -0.949 5.949 10 Si 0.942 3.058 11 H -0.282 1.282 12 H -0.314 1.314 13 H -0.243 1.243 14 C 0.140 3.860 15 C 0.116 3.884 16 N -0.699 5.699 17 C 0.542 3.458 18 O -0.552 6.552 19 C -0.096 4.096 20 C -0.116 4.116 21 C 0.105 3.895 22 N -0.469 5.469 23 C 0.110 3.890 24 C -0.063 4.063 25 Cl -0.039 7.039 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.258 0.742 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.028 0.972 38 H 0.416 0.584 39 H 0.183 0.817 40 H 0.209 0.791 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 20.978 -12.298 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.037 4.037 4 C -0.002 4.002 5 N -0.323 5.323 6 C -0.371 4.371 7 H 0.045 0.955 8 C -0.210 4.210 9 N -0.593 5.593 10 Si 0.771 3.229 11 H -0.209 1.209 12 H -0.243 1.243 13 H -0.166 1.166 14 C 0.014 3.986 15 C -0.010 4.010 16 N -0.352 5.352 17 C 0.328 3.672 18 O -0.430 6.430 19 C -0.108 4.108 20 C -0.136 4.136 21 C -0.051 4.051 22 N -0.179 5.179 23 C -0.047 4.047 24 C -0.094 4.094 25 Cl -0.010 7.010 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.255 0.745 39 H 0.200 0.800 40 H 0.226 0.774 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.149 20.805 -12.749 24.428 hybrid contribution -0.284 -0.932 1.425 1.726 sum -1.432 19.873 -11.323 22.917 Atomic orbital electron populations 1.22764 0.81571 1.02403 0.99926 1.88203 1.19605 1.28703 1.95205 1.23408 0.96349 0.84391 0.99518 1.21585 0.91629 0.98134 0.88876 1.43947 1.76842 1.02962 1.08595 1.18326 1.35539 0.82422 1.00815 0.95485 1.25981 0.99415 0.95333 1.00316 1.70065 1.46366 1.10728 1.32182 0.85881 0.78810 0.78852 0.79382 1.20918 1.24349 1.16610 1.21162 0.93357 0.95688 0.88361 1.22005 1.00693 0.92495 0.85844 1.45691 1.13484 1.51208 1.24863 1.18454 0.84860 0.80902 0.82963 1.90865 1.23661 1.53014 1.75478 1.20336 0.95343 0.99642 0.95448 1.22806 0.95252 0.95775 0.99768 1.23559 0.99584 0.93284 0.88665 1.67790 1.00250 1.20355 1.29469 1.23105 0.95268 0.92047 0.94325 1.22476 0.88463 1.00351 0.98076 1.98429 1.20357 1.85448 1.96757 0.92781 0.94565 0.90546 0.92426 0.93452 0.94167 0.88325 0.93311 0.91658 0.89447 0.92714 0.95325 0.74521 0.79964 0.77412 0.79522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 11.01 113.37 1.25 2.29 16 2 O -0.40 -17.90 10.31 -148.98 -1.54 -19.43 16 3 C 0.04 1.53 6.27 71.98 0.45 1.98 16 4 C 0.12 4.76 4.90 86.38 0.42 5.18 16 5 N -0.60 -25.94 2.04 -702.01 -1.43 -27.38 16 6 C -0.24 -13.34 9.53 84.04 0.80 -12.54 16 7 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 8 C -0.01 -0.83 5.27 84.86 0.45 -0.38 16 9 N -0.95 -60.27 13.97 21.65 0.30 -59.97 16 10 Si 0.94 44.67 25.15 68.60 1.73 46.40 16 11 H -0.28 -13.01 6.66 99.48 0.66 -12.34 16 12 H -0.31 -15.38 7.11 99.48 0.71 -14.68 16 13 H -0.24 -10.26 7.11 99.48 0.71 -9.56 16 14 C 0.14 4.51 5.83 86.38 0.50 5.01 16 15 C 0.12 3.77 5.95 86.38 0.51 4.29 16 16 N -0.70 -16.76 5.51 -465.76 -2.57 -19.33 16 17 C 0.54 15.10 7.79 86.85 0.68 15.78 16 18 O -0.55 -20.32 14.17 -3.79 -0.05 -20.38 16 19 C -0.10 -2.01 5.91 -19.86 -0.12 -2.13 16 20 C -0.12 -1.39 9.61 22.63 0.22 -1.18 16 21 C 0.11 1.12 11.17 84.65 0.95 2.07 16 22 N -0.47 -7.38 10.33 -195.91 -2.02 -9.40 16 23 C 0.11 1.86 10.99 84.73 0.93 2.79 16 24 C -0.06 -1.38 6.38 22.71 0.14 -1.23 16 25 Cl -0.04 -1.01 26.24 -2.72 -0.07 -1.08 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.05 1.64 5.94 -2.38 -0.01 1.63 16 31 H 0.04 1.80 3.50 -2.39 -0.01 1.79 16 32 H 0.10 2.93 7.92 -2.39 -0.02 2.91 16 33 H 0.26 15.61 8.31 -92.71 -0.77 14.83 16 34 H 0.07 2.09 8.04 -2.39 -0.02 2.07 16 35 H 0.09 2.09 7.91 -2.39 -0.02 2.07 16 36 H 0.05 1.89 6.00 -2.39 -0.01 1.88 16 37 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.42 6.26 6.61 -92.71 -0.61 5.65 16 39 H 0.18 0.86 6.54 -2.91 -0.02 0.84 16 40 H 0.21 0.52 8.06 -2.91 -0.02 0.50 16 41 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -80.81 354.86 1.94 -78.87 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.41 Total: 9.77 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 7.19 Total: 21.93 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -5.72 Total: -116.07 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -1.59 Total: -39.81 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.73 Total: 46.40 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.07 Total: -1.08 kcal Total: -80.81 1.94 -78.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755840739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.196 kcal (2) G-P(sol) polarization free energy of solvation -80.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds