Wall clock time and date at job start Tue Mar 31 2020 15:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99941 * 2 1 4 4 C 1.52996 * 109.47034 * 269.99771 * 3 2 1 5 5 O 1.42908 * 109.47350 * 64.99947 * 4 3 2 6 6 C 1.42901 * 114.00140 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47016 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47398 * 64.99783 * 7 6 5 9 9 C 1.36930 * 119.99815 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00571 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99838 * 179.97438 * 9 8 7 12 12 N 1.31620 * 119.99954 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99973 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46938 * 90.00301 * 13 11 9 15 15 H 1.48508 * 109.47020 * 209.99992 * 13 11 9 16 16 H 1.48494 * 109.47499 * 329.99930 * 13 11 9 17 17 C 1.34777 * 120.00163 * 179.97438 * 2 1 3 18 18 O 1.21519 * 120.00272 * 182.07944 * 17 2 1 19 19 C 1.48108 * 119.99759 * 2.08834 * 17 2 1 20 20 C 1.39350 * 119.70678 * 172.78955 * 19 17 2 21 21 C 1.38527 * 119.07562 * 179.97438 * 20 19 17 22 22 C 1.38768 * 118.47832 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 120.33611 * 179.97438 * 22 21 20 24 24 C 1.38715 * 119.32679 * 0.02562 * 22 21 20 25 25 N 1.31495 * 120.88131 * 0.02562 * 24 22 21 26 26 H 1.08993 * 109.47326 * 263.77236 * 1 2 3 27 27 H 1.08999 * 109.47034 * 23.77735 * 1 2 3 28 28 H 1.09005 * 109.46787 * 143.77300 * 1 2 3 29 29 H 1.09000 * 109.47035 * 29.99577 * 3 2 1 30 30 H 1.08996 * 109.46864 * 149.99623 * 3 2 1 31 31 H 1.09002 * 109.47288 * 184.99783 * 4 3 2 32 32 H 1.08998 * 109.47163 * 304.99978 * 4 3 2 33 33 H 1.09006 * 109.46864 * 299.99881 * 6 5 4 34 34 H 1.08997 * 109.47163 * 59.99585 * 6 5 4 35 35 H 1.08996 * 109.46742 * 184.99796 * 7 6 5 36 36 H 1.09004 * 109.46683 * 304.99495 * 7 6 5 37 37 H 0.96999 * 120.00014 * 0.02562 * 8 7 6 38 38 H 0.97000 * 120.00096 * 179.97438 * 12 11 9 39 39 H 1.08000 * 120.46114 * 0.25668 * 20 19 17 40 40 H 1.08004 * 120.75966 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.56046 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 8 1.2061 1.9935 -2.0815 6 6 1.3325 2.4163 -3.4406 7 6 -0.0565 2.6906 -4.0207 8 7 -0.6645 3.8228 -3.3175 9 6 -1.9167 4.2530 -3.6666 10 1 -2.4563 3.7574 -4.4601 11 6 -2.4931 5.3255 -3.0000 12 7 -1.8362 5.9286 -2.0319 13 14 -4.2011 5.9129 -3.4767 14 1 -5.2166 5.1873 -2.6720 15 1 -4.3134 7.3708 -3.2175 16 1 -4.4310 5.6475 -4.9196 17 6 2.1390 -1.1672 0.0005 18 8 3.3536 -1.1675 0.0387 19 6 1.3992 -2.4494 -0.0456 20 6 2.0986 -3.6452 -0.1968 21 6 1.3935 -4.8369 -0.2379 22 6 0.0110 -4.7920 -0.1266 23 17 -0.9204 -6.2563 -0.1726 24 6 -0.6192 -3.5651 0.0206 25 7 0.0756 -2.4492 0.0553 26 1 -0.3633 -0.1115 1.0215 27 1 -0.3633 0.9404 -0.4143 28 1 -0.3633 -0.8291 -0.6074 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1384 0.5139 31 1 3.0733 2.6064 -1.4438 32 1 2.9643 0.9131 -1.9815 33 1 1.9301 3.3269 -3.4838 34 1 1.8208 1.6334 -4.0208 35 1 0.0328 2.9269 -5.0809 36 1 -0.6828 1.8071 -3.8968 37 1 -0.1801 4.2677 -2.6046 38 1 -2.2387 6.6783 -1.5663 39 1 3.1756 -3.6432 -0.2763 40 1 1.9080 -5.7794 -0.3537 41 1 -1.6950 -3.5257 0.1079 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755877414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:13 Heat of formation + Delta-G solvation = -37.064540 kcal Electronic energy + Delta-G solvation = -25033.748253 eV Core-core repulsion = 21168.333439 eV Total energy + Delta-G solvation = -3865.414814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.95784 -40.30159 -39.00802 -37.73544 -36.91591 -36.16461 -33.83185 -33.37287 -32.58965 -30.98905 -29.26680 -27.62139 -25.81718 -25.44619 -24.89462 -23.65873 -22.78628 -21.08660 -19.23197 -18.71150 -18.32645 -17.73481 -17.55134 -17.26422 -16.83510 -16.74475 -16.20967 -15.89012 -15.73381 -15.20556 -15.13457 -14.72702 -14.59327 -14.52933 -14.24330 -13.76983 -13.66867 -13.32732 -13.19099 -13.09836 -12.95472 -12.74633 -12.70951 -12.53947 -12.27148 -12.11460 -11.90621 -11.68547 -11.46696 -11.04318 -10.94792 -10.54835 -10.32729 -10.15776 -9.68339 -8.96457 -7.91062 -5.19682 -0.68254 -0.00340 0.85439 1.49034 1.49096 1.51268 1.59469 1.85291 2.57908 2.58788 2.77589 2.92879 3.42585 3.48440 3.59105 3.74114 3.88137 3.96257 4.04841 4.11753 4.28884 4.42739 4.44994 4.46876 4.55118 4.60464 4.64333 4.68017 4.75398 4.78607 4.88374 5.00624 5.12323 5.14116 5.36796 5.49200 5.50944 6.18858 6.29659 6.36150 6.45893 6.94072 7.36992 8.12628 8.37480 9.32532 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013026 B = 0.002664 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.985803 B =10507.439529 C =11888.714150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.584 5.584 3 C 0.115 3.885 4 C 0.047 3.953 5 O -0.392 6.392 6 C 0.067 3.933 7 C 0.152 3.848 8 N -0.739 5.739 9 C -0.245 4.245 10 H 0.075 0.925 11 C -0.076 4.076 12 N -0.968 5.968 13 Si 0.974 3.026 14 H -0.287 1.287 15 H -0.295 1.295 16 H -0.269 1.269 17 C 0.561 3.439 18 O -0.565 6.565 19 C 0.062 3.938 20 C -0.098 4.098 21 C -0.062 4.062 22 C -0.068 4.068 23 Cl -0.036 7.036 24 C 0.104 3.896 25 N -0.447 5.447 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.021 0.979 37 H 0.375 0.625 38 H 0.250 0.750 39 H 0.164 0.836 40 H 0.183 0.817 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.002 -25.353 5.237 27.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.313 5.313 3 C -0.007 4.007 4 C -0.030 4.030 5 O -0.312 6.312 6 C -0.010 4.010 7 C 0.025 3.975 8 N -0.382 5.382 9 C -0.377 4.377 10 H 0.093 0.907 11 C -0.268 4.268 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.214 1.214 15 H -0.222 1.222 16 H -0.194 1.194 17 C 0.349 3.651 18 O -0.445 6.445 19 C -0.075 4.075 20 C -0.119 4.119 21 C -0.088 4.088 22 C -0.097 4.097 23 Cl -0.007 7.007 24 C -0.056 4.056 25 N -0.159 5.159 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.207 0.793 38 H 0.059 0.941 39 H 0.181 0.819 40 H 0.200 0.800 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 7.812 -24.657 5.327 26.408 hybrid contribution -0.238 0.031 -0.121 0.269 sum 7.574 -24.626 5.206 26.285 Atomic orbital electron populations 1.22327 0.76912 1.03621 1.02590 1.47778 1.08784 1.05202 1.69531 1.21696 0.98856 0.84624 0.95510 1.22946 0.86586 0.99690 0.93813 1.87993 1.29667 1.87640 1.25862 1.22644 0.97053 0.98509 0.82785 1.20844 0.91946 0.89879 0.94788 1.42471 1.17278 1.36041 1.42453 1.19642 0.93588 1.10453 1.13978 0.90708 1.25571 1.02551 0.99551 0.99154 1.69834 1.39422 1.25520 1.27153 0.85133 0.79825 0.76711 0.78042 1.21382 1.22204 1.19397 1.18188 0.86383 0.83691 0.76866 1.90742 1.13648 1.87371 1.52747 1.21177 0.90495 0.94147 1.01654 1.22231 1.03013 0.90483 0.96141 1.21878 0.91704 1.00216 0.95031 1.22475 0.93808 0.89930 1.03486 1.98419 1.72484 1.33442 1.96374 1.23392 1.02179 0.85394 0.94618 1.68278 1.06945 1.29345 1.11359 0.92028 0.92592 0.87706 0.88988 0.87453 0.91112 0.93480 0.93281 0.91113 0.93964 0.96103 0.79263 0.94079 0.81853 0.79985 0.79130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.39 9.07 127.77 1.16 3.55 16 2 N -0.58 -16.08 2.84 -849.90 -2.41 -18.49 16 3 C 0.12 3.06 5.80 86.38 0.50 3.56 16 4 C 0.05 1.32 6.28 71.98 0.45 1.77 16 5 O -0.39 -13.78 9.23 -148.98 -1.38 -15.15 16 6 C 0.07 2.24 6.07 71.98 0.44 2.68 16 7 C 0.15 6.26 6.64 86.38 0.57 6.83 16 8 N -0.74 -38.82 5.55 -343.46 -1.91 -40.73 16 9 C -0.24 -13.96 9.99 84.03 0.84 -13.12 16 10 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 11 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 12 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 13 Si 0.97 46.59 29.55 68.60 2.03 48.61 16 14 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 15 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 C 0.56 15.40 7.66 86.86 0.67 16.07 16 18 O -0.57 -17.44 15.91 -3.77 -0.06 -17.50 16 19 C 0.06 1.40 6.62 41.90 0.28 1.67 16 20 C -0.10 -1.64 9.63 22.61 0.22 -1.43 16 21 C -0.06 -0.75 9.97 22.47 0.22 -0.52 16 22 C -0.07 -0.90 6.35 22.51 0.14 -0.75 16 23 Cl -0.04 -0.41 28.99 -2.72 -0.08 -0.49 16 24 C 0.10 1.64 10.98 84.86 0.93 2.57 16 25 N -0.45 -9.41 6.03 -184.82 -1.11 -10.53 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.82 7.25 -2.39 -0.02 1.80 16 28 H 0.11 2.80 5.26 -2.75 -0.01 2.78 16 29 H 0.09 2.45 8.07 -2.39 -0.02 2.43 16 30 H 0.11 2.60 7.39 -2.39 -0.02 2.58 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.38 21.13 7.67 -92.71 -0.71 20.42 16 38 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.16 2.48 7.66 -2.91 -0.02 2.46 16 40 H 0.18 1.03 8.06 -2.91 -0.02 1.00 16 41 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -70.96 365.60 2.59 -68.36 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.34 Total: 26.89 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 6.89 Total: 18.91 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -5.15 Total: -129.64 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.44 Total: -32.65 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -70.96 2.59 -68.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755877414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.296 kcal (2) G-P(sol) polarization free energy of solvation -70.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds