Wall clock time and date at job start Tue Mar 31 2020 14:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48500 * 109.46704 * 268.00288 * 3 2 1 5 5 H 1.48498 * 109.47150 * 28.00233 * 3 2 1 6 6 H 1.48495 * 109.46899 * 148.00500 * 3 2 1 7 7 C 1.40222 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00114 * 346.95922 * 7 2 1 9 9 C 1.41106 * 119.99925 * 166.96857 * 7 2 1 10 10 C 1.40888 * 120.10243 * 328.49189 * 9 7 2 11 11 C 1.36315 * 119.89602 * 179.97438 * 10 9 7 12 12 C 1.40017 * 120.10255 * 0.02562 * 11 10 9 13 13 C 1.47637 * 119.89411 * 179.97438 * 12 11 10 14 14 O 1.21592 * 120.00353 * 26.98034 * 13 12 11 15 15 N 1.34775 * 120.00242 * 206.98134 * 13 12 11 16 16 C 1.47155 * 120.97930 * 5.35478 * 15 13 12 17 17 C 1.53290 * 108.38813 * 129.48519 * 16 15 13 18 18 O 1.42967 * 109.22253 * 52.29978 * 17 16 15 19 19 C 1.42961 * 114.16494 * 297.41886 * 18 17 16 20 20 C 1.47150 * 120.98871 * 185.37026 * 15 13 12 21 21 H 1.08999 * 109.68260 * 110.78901 * 20 15 13 22 22 C 1.50701 * 109.70845 * 350.25949 * 20 15 13 23 23 C 1.34512 * 125.78970 * 113.26596 * 22 20 15 24 24 C 1.41389 * 106.84388 * 179.88897 * 23 22 20 25 25 C 1.34519 * 106.83684 * 0.37092 * 24 23 22 26 26 O 1.34305 * 125.78944 * 293.57277 * 22 20 15 27 27 C 1.40012 * 120.21001 * 0.25334 * 12 11 10 28 28 C 1.36324 * 120.10629 * 359.48092 * 27 12 11 29 29 H 0.97004 * 119.99846 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.05176 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.94977 * 180.02562 * 11 10 9 32 32 H 1.08997 * 109.68156 * 9.75597 * 16 15 13 33 33 H 1.09003 * 109.67718 * 249.20935 * 16 15 13 34 34 H 1.09001 * 109.51051 * 292.37775 * 17 16 15 35 35 H 1.09001 * 109.51332 * 172.22168 * 17 16 15 36 36 H 1.08998 * 109.51416 * 302.65495 * 19 18 17 37 37 H 1.09005 * 109.55034 * 182.52887 * 19 18 17 38 38 H 1.07998 * 126.58172 * 0.02562 * 23 22 20 39 39 H 1.07993 * 126.58427 * 180.12620 * 24 23 22 40 40 H 1.08003 * 125.79000 * 179.79860 * 25 24 23 41 41 H 1.07999 * 119.94567 * 179.75376 * 27 12 11 42 42 H 1.07993 * 120.05020 * 180.27472 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.5302 2.0220 -1.3993 5 1 1.4174 2.6645 0.6573 6 1 3.5162 1.4527 0.7418 7 6 2.0075 -1.2144 -0.0005 8 1 1.4884 -2.1378 0.2101 9 6 3.3913 -1.2301 -0.2761 10 6 3.9483 -0.2769 -1.1514 11 6 5.2858 -0.2956 -1.4142 12 6 6.1056 -1.2604 -0.8162 13 6 7.5534 -1.2767 -1.1046 14 8 8.1218 -0.2498 -1.4222 15 7 8.2453 -2.4299 -1.0158 16 6 7.5612 -3.7050 -0.7481 17 6 8.0193 -4.7283 -1.7935 18 8 9.4482 -4.7676 -1.8190 19 6 10.0607 -3.5356 -2.2075 20 6 9.7071 -2.4513 -1.1833 21 1 10.1826 -2.6784 -0.2291 22 6 10.1813 -1.1099 -1.6800 23 6 10.9481 -0.2432 -0.9942 24 6 11.1526 0.8760 -1.8337 25 6 10.4918 0.6298 -2.9792 26 8 9.9054 -0.5745 -2.8805 27 6 5.5557 -2.2133 0.0498 28 6 4.2202 -2.1991 0.3229 29 1 -0.4850 0.8401 0.0004 30 1 3.3168 0.4679 -1.6128 31 1 5.7138 0.4349 -2.0847 32 1 6.4826 -3.5649 -0.8195 33 1 7.8206 -4.0583 0.2499 34 1 7.6455 -4.4380 -2.7754 35 1 7.6327 -5.7135 -1.5325 36 1 9.6943 -3.2410 -3.1908 37 1 11.1427 -3.6621 -2.2449 38 1 11.3352 -0.3775 0.0050 39 1 11.7258 1.7606 -1.5987 40 1 10.4417 1.2885 -3.8336 41 1 6.1913 -2.9580 0.5056 42 1 3.7977 -2.9318 0.9944 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371145708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:49 Heat of formation + Delta-G solvation = -5.741592 kcal Electronic energy + Delta-G solvation = -28190.949370 eV Core-core repulsion = 24297.032919 eV Total energy + Delta-G solvation = -3893.916451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.28223 -40.19737 -38.38810 -37.32120 -34.73576 -33.99246 -32.95011 -32.36742 -30.61072 -30.05984 -28.88187 -27.43809 -25.89441 -24.23591 -22.78469 -21.73904 -21.53843 -20.99737 -20.32043 -19.14628 -17.90929 -17.31446 -16.90965 -16.35843 -15.93210 -15.68547 -15.43517 -15.23236 -15.18877 -14.64681 -14.24908 -14.23590 -13.68563 -13.35884 -13.07275 -12.68338 -12.66936 -12.54699 -12.48316 -12.36127 -12.09285 -12.00641 -11.87917 -11.45047 -11.02636 -10.95706 -10.81495 -10.41308 -10.27983 -10.10145 -9.79439 -9.63216 -9.38317 -9.26730 -8.48009 -7.99753 -7.84352 -7.71512 -7.22587 -4.78549 1.93650 2.05936 2.54040 2.86575 2.96428 3.08784 3.16075 3.17825 3.35688 3.52679 3.68434 3.80286 4.35907 4.50180 4.71422 4.86516 4.94919 5.11050 5.14374 5.22655 5.34633 5.37956 5.45091 5.52714 5.60320 5.66566 5.75374 5.83773 5.95548 6.07247 6.16251 6.32955 6.36543 6.51611 6.59495 6.63241 6.83584 6.88285 6.92070 7.18379 7.26151 7.38771 7.50300 7.62152 7.78032 7.83031 8.06126 8.36956 8.50053 8.72944 9.77165 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.003953 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.786261 B = 7080.970426 C = 8432.089001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.082 3.918 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.425 4.425 8 H 0.097 0.903 9 C 0.106 3.894 10 C -0.255 4.255 11 C -0.009 4.009 12 C -0.279 4.279 13 C 0.574 3.426 14 O -0.530 6.530 15 N -0.622 5.622 16 C 0.055 3.945 17 C 0.043 3.957 18 O -0.379 6.379 19 C 0.055 3.945 20 C 0.193 3.807 21 H 0.103 0.897 22 C 0.036 3.964 23 C -0.217 4.217 24 C -0.211 4.211 25 C -0.036 4.036 26 O -0.161 6.161 27 C -0.064 4.064 28 C -0.214 4.214 29 H 0.291 0.709 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.132 0.868 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.192 0.808 41 H 0.114 0.886 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.425 -4.809 -2.711 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.140 4.140 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.451 4.451 8 H 0.115 0.885 9 C 0.103 3.897 10 C -0.274 4.274 11 C -0.028 4.028 12 C -0.283 4.283 13 C 0.370 3.630 14 O -0.409 6.409 15 N -0.359 5.359 16 C -0.068 4.068 17 C -0.035 4.035 18 O -0.297 6.297 19 C -0.023 4.023 20 C 0.089 3.911 21 H 0.121 0.879 22 C -0.015 4.015 23 C -0.237 4.237 24 C -0.230 4.230 25 C -0.104 4.104 26 O -0.056 6.056 27 C -0.083 4.083 28 C -0.234 4.234 29 H 0.102 0.898 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.149 0.851 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.208 0.792 41 H 0.132 0.868 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.330 -4.483 -3.032 16.258 hybrid contribution 0.015 1.240 0.177 1.253 sum 15.346 -3.243 -2.856 15.942 Atomic orbital electron populations 1.69566 1.08277 1.31078 1.32335 1.26332 0.94876 1.02212 0.90627 0.86234 0.80598 0.78886 0.79759 1.19091 1.21663 1.16670 1.19754 0.91628 0.95791 1.37974 0.88539 1.17882 0.93218 0.90503 0.88126 1.20867 0.95013 1.05529 1.05985 1.20335 0.92923 0.94195 0.95325 1.18786 0.90767 1.05652 1.13143 1.18693 0.87426 0.81747 0.75152 1.90678 1.69197 1.32074 1.48966 1.48198 1.05125 1.08115 1.74457 1.23277 1.01403 0.83264 0.98814 1.23146 0.80964 1.00315 0.99058 1.87944 1.19723 1.32576 1.89470 1.22986 0.98981 0.83709 0.96588 1.20215 0.82386 0.89336 0.99137 0.87906 1.21317 0.98695 0.95586 0.85911 1.21193 1.06562 0.95136 1.00853 1.21543 1.06114 1.00498 0.94884 1.23664 0.99042 0.86720 1.01015 1.83955 1.58559 1.28954 1.34179 1.20940 0.95516 0.95699 0.96096 1.20742 0.92870 1.04374 1.05367 0.89772 0.87443 0.87988 0.85054 0.90744 0.92354 0.87444 0.92001 0.87530 0.84604 0.84399 0.79158 0.86832 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.63 13.92 55.56 0.77 -18.85 16 2 C 0.08 2.00 5.46 -17.31 -0.09 1.90 16 3 Si 0.92 20.13 24.46 -169.99 -4.16 15.97 16 4 H -0.26 -5.68 6.42 56.52 0.36 -5.32 16 5 H -0.29 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.24 -5.59 6.95 56.52 0.39 -5.19 16 7 C -0.42 -10.61 9.59 -37.75 -0.36 -10.97 16 8 H 0.10 2.48 8.06 -52.48 -0.42 2.06 16 9 C 0.11 2.51 5.12 -106.81 -0.55 1.96 16 10 C -0.25 -5.94 7.10 -39.27 -0.28 -6.22 16 11 C -0.01 -0.19 9.52 -39.61 -0.38 -0.57 16 12 C -0.28 -5.79 5.56 -104.73 -0.58 -6.38 16 13 C 0.57 11.30 7.41 -12.42 -0.09 11.21 16 14 O -0.53 -11.58 12.02 -18.59 -0.22 -11.81 16 15 N -0.62 -9.81 3.02 -167.24 -0.51 -10.31 16 16 C 0.05 0.70 4.84 -3.53 -0.02 0.68 16 17 C 0.04 0.47 6.98 37.31 0.26 0.74 16 18 O -0.38 -4.61 10.74 -35.23 -0.38 -4.99 16 19 C 0.06 0.66 6.27 37.31 0.23 0.89 16 20 C 0.19 2.68 3.55 -68.58 -0.24 2.43 16 21 H 0.10 1.27 8.11 -51.93 -0.42 0.85 16 22 C 0.04 0.57 3.53 -35.62 -0.13 0.45 16 23 C -0.22 -3.30 10.54 -39.70 -0.42 -3.72 16 24 C -0.21 -3.04 10.91 -39.70 -0.43 -3.47 16 25 C -0.04 -0.53 11.80 29.42 0.35 -0.18 16 26 O -0.16 -2.72 9.08 -18.18 -0.17 -2.89 16 27 C -0.06 -1.22 7.38 -39.61 -0.29 -1.51 16 28 C -0.21 -4.48 9.73 -39.27 -0.38 -4.86 16 29 H 0.29 6.54 8.29 -40.82 -0.34 6.20 16 30 H 0.11 2.50 4.35 -52.49 -0.23 2.27 16 31 H 0.10 2.23 7.86 -52.49 -0.41 1.81 16 32 H 0.13 1.82 4.16 -51.93 -0.22 1.60 16 33 H 0.07 0.83 7.92 -51.93 -0.41 0.42 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.19 2.08 8.06 -52.48 -0.42 1.66 16 41 H 0.11 1.77 5.01 -52.49 -0.26 1.51 16 42 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -29.31 337.52 -7.91 -37.22 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.94 Total: 8.19 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -3.40 Total: -17.61 kcal Atomic # 7 Polarization: -29.44 SS G_CDS: 0.27 Total: -29.17 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.77 Total: -19.69 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.16 Total: 15.97 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.31 -7.91 -37.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371145708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.480 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds