Wall clock time and date at job start Tue Mar 31 2020 14:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48500 * 109.46704 * 268.00288 * 3 2 1 5 5 H 1.48498 * 109.47150 * 28.00233 * 3 2 1 6 6 H 1.48495 * 109.46899 * 148.00500 * 3 2 1 7 7 C 1.40222 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00114 * 346.95922 * 7 2 1 9 9 C 1.41106 * 119.99925 * 166.96857 * 7 2 1 10 10 C 1.40888 * 120.10243 * 328.49189 * 9 7 2 11 11 C 1.36315 * 119.89602 * 179.97438 * 10 9 7 12 12 C 1.40017 * 120.10255 * 0.02562 * 11 10 9 13 13 C 1.47637 * 119.89411 * 179.97438 * 12 11 10 14 14 O 1.21592 * 120.00353 * 26.98034 * 13 12 11 15 15 N 1.34775 * 120.00242 * 206.98134 * 13 12 11 16 16 C 1.47155 * 120.97930 * 5.35478 * 15 13 12 17 17 C 1.53290 * 108.38813 * 129.48519 * 16 15 13 18 18 O 1.42967 * 109.22253 * 52.29978 * 17 16 15 19 19 C 1.42961 * 114.16494 * 297.41886 * 18 17 16 20 20 C 1.47150 * 120.98871 * 185.37026 * 15 13 12 21 21 H 1.08999 * 109.68260 * 110.78901 * 20 15 13 22 22 C 1.50701 * 109.70845 * 350.25949 * 20 15 13 23 23 C 1.34512 * 125.78970 * 113.26596 * 22 20 15 24 24 C 1.41389 * 106.84388 * 179.88897 * 23 22 20 25 25 C 1.34519 * 106.83684 * 0.37092 * 24 23 22 26 26 O 1.34305 * 125.78944 * 293.57277 * 22 20 15 27 27 C 1.40012 * 120.21001 * 0.25334 * 12 11 10 28 28 C 1.36324 * 120.10629 * 359.48092 * 27 12 11 29 29 H 0.97004 * 119.99846 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.05176 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.94977 * 180.02562 * 11 10 9 32 32 H 1.08997 * 109.68156 * 9.75597 * 16 15 13 33 33 H 1.09003 * 109.67718 * 249.20935 * 16 15 13 34 34 H 1.09001 * 109.51051 * 292.37775 * 17 16 15 35 35 H 1.09001 * 109.51332 * 172.22168 * 17 16 15 36 36 H 1.08998 * 109.51416 * 302.65495 * 19 18 17 37 37 H 1.09005 * 109.55034 * 182.52887 * 19 18 17 38 38 H 1.07998 * 126.58172 * 0.02562 * 23 22 20 39 39 H 1.07993 * 126.58427 * 180.12620 * 24 23 22 40 40 H 1.08003 * 125.79000 * 179.79860 * 25 24 23 41 41 H 1.07999 * 119.94567 * 179.75376 * 27 12 11 42 42 H 1.07993 * 120.05020 * 180.27472 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.5302 2.0220 -1.3993 5 1 1.4174 2.6645 0.6573 6 1 3.5162 1.4527 0.7418 7 6 2.0075 -1.2144 -0.0005 8 1 1.4884 -2.1378 0.2101 9 6 3.3913 -1.2301 -0.2761 10 6 3.9483 -0.2769 -1.1514 11 6 5.2858 -0.2956 -1.4142 12 6 6.1056 -1.2604 -0.8162 13 6 7.5534 -1.2767 -1.1046 14 8 8.1218 -0.2498 -1.4222 15 7 8.2453 -2.4299 -1.0158 16 6 7.5612 -3.7050 -0.7481 17 6 8.0193 -4.7283 -1.7935 18 8 9.4482 -4.7676 -1.8190 19 6 10.0607 -3.5356 -2.2075 20 6 9.7071 -2.4513 -1.1833 21 1 10.1826 -2.6784 -0.2291 22 6 10.1813 -1.1099 -1.6800 23 6 10.9481 -0.2432 -0.9942 24 6 11.1526 0.8760 -1.8337 25 6 10.4918 0.6298 -2.9792 26 8 9.9054 -0.5745 -2.8805 27 6 5.5557 -2.2133 0.0498 28 6 4.2202 -2.1991 0.3229 29 1 -0.4850 0.8401 0.0004 30 1 3.3168 0.4679 -1.6128 31 1 5.7138 0.4349 -2.0847 32 1 6.4826 -3.5649 -0.8195 33 1 7.8206 -4.0583 0.2499 34 1 7.6455 -4.4380 -2.7754 35 1 7.6327 -5.7135 -1.5325 36 1 9.6943 -3.2410 -3.1908 37 1 11.1427 -3.6621 -2.2449 38 1 11.3352 -0.3775 0.0050 39 1 11.7258 1.7606 -1.5987 40 1 10.4417 1.2885 -3.8336 41 1 6.1913 -2.9580 0.5056 42 1 3.7977 -2.9318 0.9944 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371145708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:48 Heat of formation + Delta-G solvation = -22.431962 kcal Electronic energy + Delta-G solvation = -28191.673119 eV Core-core repulsion = 24297.032919 eV Total energy + Delta-G solvation = -3894.640199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.42114 -41.49289 -39.74920 -38.85032 -36.03994 -35.66220 -34.16425 -33.51556 -32.25006 -31.72466 -29.99377 -28.61736 -27.48223 -25.33616 -24.16874 -23.30685 -22.82385 -22.24843 -21.63981 -20.46257 -19.62624 -18.69797 -18.08482 -17.52401 -17.30705 -16.98139 -16.65474 -16.50328 -16.34630 -15.96498 -15.69574 -15.64010 -15.18350 -14.70188 -14.67089 -14.29599 -14.11873 -14.07885 -13.70817 -13.58749 -13.45740 -13.15980 -13.09847 -12.69216 -12.65264 -12.47956 -12.11830 -12.03549 -11.76166 -11.55430 -11.25194 -11.10117 -10.91320 -10.58889 -9.75455 -9.66649 -9.51522 -9.04429 -8.94128 -6.64817 0.25221 0.81440 0.90894 1.20509 1.31445 1.41120 1.72410 1.88628 2.02002 2.04318 2.28252 2.60466 2.78005 3.40025 3.49176 3.60674 3.87781 3.95704 4.02965 4.16828 4.21004 4.23614 4.25294 4.31014 4.36131 4.57083 4.61825 4.61890 4.80695 4.84995 4.87828 4.90332 4.99242 5.07709 5.13162 5.27333 5.39407 5.43917 5.58034 5.70249 5.76932 5.81938 5.99916 6.07313 6.23782 6.31741 6.40427 6.56924 6.68982 7.24245 8.01503 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.003953 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.786261 B = 7080.970426 C = 8432.089001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.056 3.944 3 Si 0.960 3.040 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.460 4.460 8 H 0.075 0.925 9 C 0.094 3.906 10 C -0.266 4.266 11 C -0.024 4.024 12 C -0.272 4.272 13 C 0.570 3.430 14 O -0.557 6.557 15 N -0.617 5.617 16 C 0.048 3.952 17 C 0.045 3.955 18 O -0.379 6.379 19 C 0.062 3.938 20 C 0.189 3.811 21 H 0.125 0.875 22 C 0.019 3.981 23 C -0.229 4.229 24 C -0.222 4.222 25 C -0.049 4.049 26 O -0.184 6.184 27 C -0.049 4.049 28 C -0.218 4.218 29 H 0.299 0.701 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.140 0.860 36 H 0.047 0.953 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.218 0.782 41 H 0.157 0.843 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.182 -6.003 -2.206 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.162 4.162 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.094 0.906 9 C 0.091 3.909 10 C -0.285 4.285 11 C -0.043 4.043 12 C -0.276 4.276 13 C 0.363 3.637 14 O -0.437 6.437 15 N -0.352 5.352 16 C -0.073 4.073 17 C -0.032 4.032 18 O -0.297 6.297 19 C -0.016 4.016 20 C 0.087 3.913 21 H 0.142 0.858 22 C -0.032 4.032 23 C -0.249 4.249 24 C -0.241 4.241 25 C -0.116 4.116 26 O -0.080 6.080 27 C -0.067 4.067 28 C -0.237 4.237 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.139 0.861 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.157 0.843 36 H 0.066 0.934 37 H 0.150 0.850 38 H 0.169 0.831 39 H 0.177 0.823 40 H 0.235 0.765 41 H 0.174 0.826 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 18.095 -5.713 -2.527 19.143 hybrid contribution -0.532 1.506 -0.036 1.598 sum 17.563 -4.207 -2.563 18.241 Atomic orbital electron populations 1.69575 1.08943 1.32029 1.34556 1.26767 0.95300 1.03847 0.90328 0.85604 0.79056 0.77167 0.79637 1.18781 1.19976 1.18484 1.19718 0.92569 0.95453 1.41045 0.90639 1.18061 0.93092 0.91437 0.88343 1.20900 0.95457 1.05753 1.06373 1.20457 0.92857 0.95055 0.95938 1.19176 0.91803 1.04742 1.11881 1.18524 0.86999 0.82664 0.75471 1.90677 1.69704 1.33459 1.49895 1.48190 1.06216 1.07895 1.72851 1.23479 1.00566 0.82263 1.01002 1.23235 0.80587 1.01352 0.98050 1.87962 1.20102 1.32391 1.89285 1.22986 1.00385 0.83032 0.95157 1.20549 0.80880 0.89236 1.00672 0.85764 1.21693 0.99198 0.96518 0.85821 1.21556 1.06447 0.95286 1.01583 1.21911 1.06275 1.01150 0.94759 1.24335 0.98568 0.86478 1.02248 1.83933 1.59272 1.29896 1.34871 1.21314 0.95150 0.95493 0.94708 1.21021 0.93514 1.03961 1.05187 0.88967 0.88073 0.88115 0.86125 0.87940 0.93324 0.84265 0.93416 0.85040 0.83127 0.82326 0.76520 0.82572 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.36 13.92 21.87 0.30 -42.06 16 2 C 0.06 2.82 5.46 85.35 0.47 3.29 16 3 Si 0.96 42.13 24.46 68.60 1.68 43.81 16 4 H -0.26 -11.20 6.42 99.48 0.64 -10.56 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.26 -12.02 6.95 99.48 0.69 -11.33 16 7 C -0.46 -23.76 9.59 23.46 0.22 -23.54 16 8 H 0.08 4.08 8.06 -2.91 -0.02 4.06 16 9 C 0.09 4.47 5.12 -21.28 -0.11 4.36 16 10 C -0.27 -12.51 7.10 22.47 0.16 -12.35 16 11 C -0.02 -1.06 9.52 22.25 0.21 -0.85 16 12 C -0.27 -10.85 5.56 -19.93 -0.11 -10.96 16 13 C 0.57 21.33 7.41 86.73 0.64 21.97 16 14 O -0.56 -23.68 12.02 18.82 0.23 -23.45 16 15 N -0.62 -17.59 3.02 -801.29 -2.42 -20.01 16 16 C 0.05 1.03 4.84 86.35 0.42 1.45 16 17 C 0.04 0.83 6.98 72.08 0.50 1.33 16 18 O -0.38 -7.76 10.74 -148.98 -1.60 -9.36 16 19 C 0.06 1.29 6.27 72.08 0.45 1.74 16 20 C 0.19 4.69 3.55 44.22 0.16 4.84 16 21 H 0.12 2.57 8.11 -2.39 -0.02 2.55 16 22 C 0.02 0.55 3.53 24.83 0.09 0.64 16 23 C -0.23 -6.49 10.54 22.19 0.23 -6.26 16 24 C -0.22 -6.01 10.91 22.19 0.24 -5.76 16 25 C -0.05 -1.36 11.80 66.97 0.79 -0.57 16 26 O -0.18 -6.00 9.08 20.26 0.18 -5.82 16 27 C -0.05 -1.72 7.38 22.25 0.16 -1.56 16 28 C -0.22 -8.82 9.73 22.47 0.22 -8.60 16 29 H 0.30 13.79 8.29 -92.71 -0.77 13.02 16 30 H 0.10 4.81 4.35 -2.91 -0.01 4.80 16 31 H 0.10 4.43 7.86 -2.91 -0.02 4.41 16 32 H 0.12 2.89 4.16 -2.39 -0.01 2.88 16 33 H 0.10 1.73 7.92 -2.39 -0.02 1.71 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.14 8.07 -2.39 -0.02 1.12 16 37 H 0.13 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 39 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.22 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.16 4.18 5.01 -2.91 -0.01 4.16 16 42 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -64.68 337.52 4.10 -60.58 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.98 Total: 27.12 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 4.75 Total: -30.81 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -2.12 Total: -62.07 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -1.19 Total: -38.63 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.68 Total: 43.81 kcal Total: -64.68 4.10 -60.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371145708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.151 kcal (2) G-P(sol) polarization free energy of solvation -64.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds