Wall clock time and date at job start Tue Mar 31 2020 15:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46855 * 2 1 4 4 C 1.52997 * 109.46806 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46762 * 179.97438 * 4 3 2 6 6 C 1.35902 * 116.99812 * 180.02562 * 5 4 3 7 7 C 1.38730 * 120.05761 * 180.02562 * 6 5 4 8 8 C 1.38140 * 119.94765 * 180.02562 * 7 6 5 9 9 C 1.38264 * 120.05430 * 0.02562 * 8 7 6 10 10 S 1.76205 * 119.94387 * 179.97438 * 9 8 7 11 11 O 1.42099 * 106.40120 * 336.45812 * 10 9 8 12 12 O 1.42103 * 106.40225 * 203.53956 * 10 9 8 13 13 N 1.65599 * 107.21913 * 90.00019 * 10 9 8 14 14 C 1.46506 * 119.99791 * 89.99801 * 13 10 9 15 15 C 1.46501 * 120.00111 * 270.00122 * 13 10 9 16 16 C 1.50697 * 109.46874 * 264.99675 * 15 13 10 17 17 H 1.07995 * 120.00302 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99909 * 179.97438 * 16 15 13 19 19 N 1.31516 * 120.00052 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00263 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46960 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47261 * 120.00377 * 20 18 16 23 23 H 1.48500 * 109.47416 * 240.00817 * 20 18 16 24 24 C 1.38267 * 120.11401 * 0.25270 * 9 8 7 25 25 C 1.38149 * 120.05069 * 359.45464 * 24 9 8 26 26 H 1.09000 * 109.46467 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47123 * 299.99976 * 1 2 3 28 28 H 1.08998 * 109.46988 * 60.00557 * 1 2 3 29 29 H 1.09000 * 109.46853 * 239.99995 * 2 1 3 30 30 H 1.08993 * 109.46968 * 119.99930 * 2 1 3 31 31 H 1.08997 * 109.46897 * 59.99773 * 3 2 1 32 32 H 1.09007 * 109.47093 * 299.99643 * 3 2 1 33 33 H 1.09005 * 109.47208 * 60.00222 * 4 3 2 34 34 H 1.08993 * 109.47619 * 300.00000 * 4 3 2 35 35 H 1.08003 * 120.02555 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.97688 * 179.97438 * 8 7 6 37 37 H 1.09001 * 109.47060 * 90.00564 * 14 13 10 38 38 H 1.09004 * 109.47073 * 210.00053 * 14 13 10 39 39 H 1.09000 * 109.47212 * 330.00135 * 14 13 10 40 40 H 1.09001 * 109.47135 * 24.99777 * 15 13 10 41 41 H 1.09001 * 109.46893 * 145.00071 * 15 13 10 42 42 H 0.97000 * 119.99965 * 179.97438 * 19 18 16 43 43 H 1.07999 * 119.97486 * 179.70348 * 24 9 8 44 44 H 1.07997 * 120.02374 * 180.25575 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3935 2.9680 0.0000 7 6 5.9251 4.2494 -0.0001 8 6 7.2949 4.4278 -0.0007 9 6 8.1361 3.3305 -0.0018 10 16 9.8829 3.5614 -0.0033 11 8 10.1165 4.8531 -0.5475 12 8 10.4441 2.3752 -0.5486 13 7 10.3703 3.6251 1.5781 14 6 10.7522 2.3954 2.2770 15 6 10.4196 4.9111 2.2782 16 6 11.8162 5.4720 2.2005 17 1 12.5895 4.9256 1.6813 18 6 12.1063 6.6834 2.7915 19 7 11.1645 7.3492 3.4235 20 14 13.8372 7.3792 2.6947 21 1 14.7045 6.4444 1.9336 22 1 13.8042 8.6946 2.0065 23 1 14.3789 7.5517 4.0666 24 6 7.6089 2.0523 -0.0076 25 6 6.2397 1.8686 -0.0009 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9564 -0.8901 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9289 0.8908 35 1 5.2684 5.1069 0.0004 36 1 7.7092 5.4252 -0.0011 37 1 11.8198 2.2192 2.1454 38 1 10.5289 2.4969 3.3391 39 1 10.1919 1.5553 1.8666 40 1 9.7223 5.6063 1.8107 41 1 10.1436 4.7669 3.3228 42 1 11.3687 8.2012 3.8396 43 1 8.2681 1.1968 -0.0133 44 1 5.8285 0.8700 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005978403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:44 Heat of formation + Delta-G solvation = -98.046055 kcal Electronic energy + Delta-G solvation = -25452.963925 eV Core-core repulsion = 21690.488804 eV Total energy + Delta-G solvation = -3762.475121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.34373 -37.78240 -36.59469 -35.52497 -35.47755 -35.12059 -32.42000 -31.28639 -30.62970 -29.25885 -27.76718 -25.06304 -24.66486 -23.00826 -22.39713 -22.12668 -21.42306 -18.68795 -18.27324 -17.24243 -16.77307 -16.57832 -16.38414 -16.16305 -15.24961 -15.16321 -14.80179 -14.45821 -14.15821 -13.92327 -13.57347 -13.47123 -13.32435 -13.23831 -12.90974 -12.60188 -12.46770 -12.23268 -12.09117 -11.66503 -11.61208 -11.57221 -11.39435 -11.38384 -11.14712 -11.08242 -10.98712 -10.97762 -10.67495 -10.56777 -10.42314 -9.98487 -9.71782 -9.12268 -8.63345 -8.42832 -8.02867 -6.04690 -4.08342 0.85656 1.15701 1.26698 2.80795 3.33006 3.39287 3.40748 3.46539 3.84608 4.37036 4.38599 4.41040 4.48492 4.55602 4.61511 4.66992 4.76426 4.89261 4.96781 5.06655 5.26117 5.27497 5.29472 5.29531 5.36113 5.47327 5.54646 5.56566 5.63371 5.71993 5.80844 5.89632 5.93115 6.06993 6.11781 6.20754 6.31567 6.53489 6.61380 7.15021 7.21541 7.39121 7.59453 7.92947 8.21591 8.94356 9.56735 11.03942 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.023770 B = 0.002569 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.670839 B =10895.426248 C =11327.644968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.055 3.945 5 O -0.312 6.312 6 C 0.174 3.826 7 C -0.173 4.173 8 C 0.024 3.976 9 C -0.710 4.710 10 S 2.690 3.310 11 O -0.943 6.943 12 O -0.978 6.978 13 N -0.988 5.988 14 C 0.107 3.893 15 C 0.255 3.745 16 C -0.526 4.526 17 H 0.062 0.938 18 C 0.061 3.939 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.284 1.284 24 C 0.016 3.984 25 C -0.234 4.234 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.139 0.861 36 H 0.151 0.849 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.040 0.960 41 H 0.037 0.963 42 H 0.263 0.737 43 H 0.140 0.860 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.429 -14.308 -4.856 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.020 4.020 5 O -0.225 6.225 6 C 0.128 3.872 7 C -0.192 4.192 8 C 0.004 3.996 9 C -0.794 4.794 10 S 2.778 3.222 11 O -0.933 6.933 12 O -0.968 6.968 13 N -0.828 5.828 14 C -0.040 4.040 15 C 0.133 3.867 16 C -0.566 4.566 17 H 0.080 0.920 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.210 1.210 24 C -0.003 4.003 25 C -0.254 4.254 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.156 0.844 36 H 0.168 0.832 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.158 0.842 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.132 -13.944 -5.462 23.517 hybrid contribution 0.224 0.153 0.408 0.490 sum -17.908 -13.790 -5.053 23.161 Atomic orbital electron populations 1.21749 0.95107 1.01921 1.02155 1.21440 0.96510 0.95511 1.02506 1.21593 0.92316 0.97898 1.03932 1.22930 0.95563 0.81736 1.01791 1.86076 1.19099 1.29601 1.87762 1.19227 0.82007 0.94437 0.91541 1.20561 0.95373 0.94944 1.08361 1.20874 0.92040 0.98658 0.87978 1.31393 1.28631 0.99381 1.20011 1.02077 0.73419 0.73391 0.73307 1.93595 1.83799 1.39430 1.76451 1.93496 1.76323 1.49647 1.77357 1.57365 1.79281 1.14842 1.31361 1.21253 1.00194 0.84599 0.97910 1.19144 0.97854 0.76895 0.92818 1.21525 0.95651 1.04763 1.34657 0.91996 1.24936 0.97577 0.96530 0.95061 1.69928 1.32594 1.15120 1.35897 0.86449 0.84293 0.79146 0.77610 1.19611 1.20805 1.21025 1.20700 0.94785 0.95633 0.89156 1.21283 0.94378 0.98118 1.11584 0.92430 0.92481 0.92524 0.91624 0.91581 0.90655 0.90709 0.91743 0.91669 0.84354 0.83155 0.92839 0.91357 0.92918 0.94256 0.94534 0.92749 0.84238 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.63 5.93 -26.73 -0.16 -0.79 16 3 C -0.12 -0.79 5.58 -26.73 -0.15 -0.94 16 4 C 0.05 0.45 4.74 37.16 0.18 0.62 16 5 O -0.31 -3.64 10.14 -19.43 -0.20 -3.83 16 6 C 0.17 2.30 6.69 -39.22 -0.26 2.04 16 7 C -0.17 -2.44 9.99 -39.44 -0.39 -2.83 16 8 C 0.02 0.38 9.52 -39.61 -0.38 0.00 16 9 C -0.71 -11.86 5.98 -39.56 -0.24 -12.09 16 10 S 2.69 53.85 5.60 -107.50 -0.60 53.25 16 11 O -0.94 -22.18 16.25 -57.17 -0.93 -23.11 16 12 O -0.98 -20.05 16.34 -57.17 -0.93 -20.98 16 13 N -0.99 -20.52 3.17 -123.04 -0.39 -20.91 16 14 C 0.11 1.82 10.33 59.85 0.62 2.44 16 15 C 0.25 6.33 5.12 -5.19 -0.03 6.30 16 16 C -0.53 -14.73 9.38 -34.44 -0.32 -15.05 16 17 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 19 N -0.90 -26.00 13.29 55.43 0.74 -25.27 16 20 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 C 0.02 0.24 9.52 -39.60 -0.38 -0.14 16 25 C -0.23 -2.92 9.04 -39.43 -0.36 -3.28 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 34 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 35 H 0.14 1.67 8.06 -52.48 -0.42 1.24 16 36 H 0.15 2.41 7.61 -52.49 -0.40 2.01 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 39 H 0.05 0.73 7.79 -51.93 -0.40 0.33 16 40 H 0.04 1.02 7.61 -51.93 -0.40 0.63 16 41 H 0.04 0.92 7.96 -51.93 -0.41 0.51 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.14 1.75 7.61 -52.49 -0.40 1.35 16 44 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -33.64 380.28 -10.10 -43.74 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.90 Total: -2.99 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -1.59 Total: -22.43 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.35 Total: -46.17 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -2.06 Total: -47.93 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 53.85 SS G_CDS: -0.60 Total: 53.25 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.64 -10.10 -43.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005978403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.306 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds