Wall clock time and date at job start Tue Mar 31 2020 15:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46855 * 2 1 4 4 C 1.52997 * 109.46806 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46762 * 179.97438 * 4 3 2 6 6 C 1.35902 * 116.99812 * 180.02562 * 5 4 3 7 7 C 1.38730 * 120.05761 * 180.02562 * 6 5 4 8 8 C 1.38140 * 119.94765 * 180.02562 * 7 6 5 9 9 C 1.38264 * 120.05430 * 0.02562 * 8 7 6 10 10 S 1.76205 * 119.94387 * 179.97438 * 9 8 7 11 11 O 1.42099 * 106.40120 * 336.45812 * 10 9 8 12 12 O 1.42103 * 106.40225 * 203.53956 * 10 9 8 13 13 N 1.65599 * 107.21913 * 90.00019 * 10 9 8 14 14 C 1.46506 * 119.99791 * 89.99801 * 13 10 9 15 15 C 1.46501 * 120.00111 * 270.00122 * 13 10 9 16 16 C 1.50697 * 109.46874 * 264.99675 * 15 13 10 17 17 H 1.07995 * 120.00302 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99909 * 179.97438 * 16 15 13 19 19 N 1.31516 * 120.00052 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00263 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46960 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47261 * 120.00377 * 20 18 16 23 23 H 1.48500 * 109.47416 * 240.00817 * 20 18 16 24 24 C 1.38267 * 120.11401 * 0.25270 * 9 8 7 25 25 C 1.38149 * 120.05069 * 359.45464 * 24 9 8 26 26 H 1.09000 * 109.46467 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47123 * 299.99976 * 1 2 3 28 28 H 1.08998 * 109.46988 * 60.00557 * 1 2 3 29 29 H 1.09000 * 109.46853 * 239.99995 * 2 1 3 30 30 H 1.08993 * 109.46968 * 119.99930 * 2 1 3 31 31 H 1.08997 * 109.46897 * 59.99773 * 3 2 1 32 32 H 1.09007 * 109.47093 * 299.99643 * 3 2 1 33 33 H 1.09005 * 109.47208 * 60.00222 * 4 3 2 34 34 H 1.08993 * 109.47619 * 300.00000 * 4 3 2 35 35 H 1.08003 * 120.02555 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.97688 * 179.97438 * 8 7 6 37 37 H 1.09001 * 109.47060 * 90.00564 * 14 13 10 38 38 H 1.09004 * 109.47073 * 210.00053 * 14 13 10 39 39 H 1.09000 * 109.47212 * 330.00135 * 14 13 10 40 40 H 1.09001 * 109.47135 * 24.99777 * 15 13 10 41 41 H 1.09001 * 109.46893 * 145.00071 * 15 13 10 42 42 H 0.97000 * 119.99965 * 179.97438 * 19 18 16 43 43 H 1.07999 * 119.97486 * 179.70348 * 24 9 8 44 44 H 1.07997 * 120.02374 * 180.25575 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3935 2.9680 0.0000 7 6 5.9251 4.2494 -0.0001 8 6 7.2949 4.4278 -0.0007 9 6 8.1361 3.3305 -0.0018 10 16 9.8829 3.5614 -0.0033 11 8 10.1165 4.8531 -0.5475 12 8 10.4441 2.3752 -0.5486 13 7 10.3703 3.6251 1.5781 14 6 10.7522 2.3954 2.2770 15 6 10.4196 4.9111 2.2782 16 6 11.8162 5.4720 2.2005 17 1 12.5895 4.9256 1.6813 18 6 12.1063 6.6834 2.7915 19 7 11.1645 7.3492 3.4235 20 14 13.8372 7.3792 2.6947 21 1 14.7045 6.4444 1.9336 22 1 13.8042 8.6946 2.0065 23 1 14.3789 7.5517 4.0666 24 6 7.6089 2.0523 -0.0076 25 6 6.2397 1.8686 -0.0009 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9564 -0.8901 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9289 0.8908 35 1 5.2684 5.1069 0.0004 36 1 7.7092 5.4252 -0.0011 37 1 11.8198 2.2192 2.1454 38 1 10.5289 2.4969 3.3391 39 1 10.1919 1.5553 1.8666 40 1 9.7223 5.6063 1.8107 41 1 10.1436 4.7669 3.3228 42 1 11.3687 8.2012 3.8396 43 1 8.2681 1.1968 -0.0133 44 1 5.8285 0.8700 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005978403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:43 Heat of formation + Delta-G solvation = -119.523981 kcal Electronic energy + Delta-G solvation = -25453.895278 eV Core-core repulsion = 21690.488804 eV Total energy + Delta-G solvation = -3763.406474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.31439 -38.76365 -38.25126 -37.21246 -36.80238 -36.02845 -34.49288 -32.32868 -31.59241 -29.98399 -29.65156 -26.77551 -25.37714 -24.24934 -24.04511 -23.13387 -21.95920 -20.05245 -19.41695 -18.84260 -18.34247 -18.04544 -17.42757 -17.41879 -16.85376 -16.25679 -15.83686 -15.73530 -15.17973 -15.11002 -14.91180 -14.67906 -14.48066 -14.18618 -14.04656 -13.94893 -13.90728 -13.31193 -13.21781 -13.11697 -13.09270 -13.01612 -12.92353 -12.45168 -12.39736 -12.26355 -12.09308 -12.02626 -11.94613 -11.84388 -11.80609 -11.68475 -11.48047 -10.58238 -10.22242 -9.81597 -9.64055 -8.18842 -6.30317 -0.53703 -0.16651 0.17563 1.39713 1.42395 1.54103 1.97084 2.07855 2.42187 2.49221 2.90536 3.12021 3.34293 3.62578 3.72759 3.89899 3.92147 4.08788 4.10146 4.14296 4.23994 4.33421 4.38095 4.45522 4.60975 4.71741 4.79114 4.84378 4.84575 4.85803 4.91004 5.01547 5.03175 5.07656 5.08852 5.21150 5.23678 5.31370 5.42982 5.45980 5.53384 5.71274 5.91711 6.11731 6.22356 6.77856 7.38186 8.88921 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.023770 B = 0.002569 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.670839 B =10895.426248 C =11327.644968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.116 4.116 4 C 0.044 3.956 5 O -0.319 6.319 6 C 0.181 3.819 7 C -0.179 4.179 8 C 0.005 3.995 9 C -0.718 4.718 10 S 2.697 3.303 11 O -0.990 6.990 12 O -0.986 6.986 13 N -0.996 5.996 14 C 0.096 3.904 15 C 0.268 3.732 16 C -0.547 4.547 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.957 3.043 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.270 1.270 24 C 0.014 3.986 25 C -0.224 4.224 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.153 0.847 36 H 0.137 0.863 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.020 0.980 41 H 0.030 0.970 42 H 0.267 0.733 43 H 0.159 0.841 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.718 -16.425 -4.839 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.154 4.154 4 C -0.030 4.030 5 O -0.232 6.232 6 C 0.134 3.866 7 C -0.198 4.198 8 C -0.015 4.015 9 C -0.808 4.808 10 S 2.791 3.209 11 O -0.981 6.981 12 O -0.977 6.977 13 N -0.836 5.836 14 C -0.049 4.049 15 C 0.144 3.856 16 C -0.586 4.586 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.782 3.218 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.195 1.195 24 C -0.006 4.006 25 C -0.243 4.243 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.171 0.829 36 H 0.154 0.846 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.038 0.962 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.177 0.823 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -19.373 -16.082 -5.438 25.759 hybrid contribution 0.408 0.707 0.370 0.896 sum -18.966 -15.375 -5.067 24.935 Atomic orbital electron populations 1.21765 0.94978 1.02323 1.02046 1.21430 0.96595 0.94482 1.03124 1.21594 0.91352 0.98873 1.03585 1.23290 0.96401 0.80192 1.03153 1.86093 1.17959 1.32035 1.87081 1.19322 0.83009 0.94223 0.90063 1.20700 0.94609 0.96441 1.08092 1.20843 0.93152 0.98071 0.89390 1.30717 1.25630 1.01035 1.23375 1.01409 0.74583 0.72270 0.72650 1.93529 1.85382 1.41745 1.77415 1.93469 1.77583 1.49291 1.77353 1.57245 1.80375 1.14577 1.31355 1.21535 1.00580 0.84118 0.98715 1.18719 0.95917 0.78426 0.92496 1.21853 0.96869 1.05293 1.34587 0.92910 1.25750 1.01447 0.96900 0.94767 1.70014 1.34363 1.15547 1.36476 0.85521 0.79796 0.78270 0.78208 1.19420 1.20502 1.19514 1.20985 0.96126 0.94901 0.88565 1.21633 0.93315 0.99703 1.09641 0.91792 0.92671 0.92620 0.90946 0.91007 0.91131 0.91032 0.90240 0.90302 0.82888 0.84559 0.93295 0.90212 0.89466 0.96202 0.95154 0.92374 0.82322 0.81150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 71.98 0.71 -0.43 16 2 C -0.12 -0.89 5.93 30.60 0.18 -0.71 16 3 C -0.12 -1.24 5.58 30.59 0.17 -1.06 16 4 C 0.04 0.56 4.74 71.98 0.34 0.90 16 5 O -0.32 -6.53 10.14 -92.45 -0.94 -7.46 16 6 C 0.18 4.33 6.69 22.51 0.15 4.48 16 7 C -0.18 -4.89 9.99 22.36 0.22 -4.66 16 8 C 0.00 0.16 9.52 22.25 0.21 0.37 16 9 C -0.72 -23.80 5.98 22.28 0.13 -23.67 16 10 S 2.70 110.13 5.60 -56.49 -0.32 109.81 16 11 O -0.99 -48.91 16.25 -128.00 -2.08 -50.99 16 12 O -0.99 -40.20 16.34 -128.00 -2.09 -42.29 16 13 N -1.00 -42.05 3.17 -543.20 -1.72 -43.77 16 14 C 0.10 3.19 10.33 127.77 1.32 4.51 16 15 C 0.27 13.78 5.12 85.63 0.44 14.22 16 16 C -0.55 -31.36 9.38 25.60 0.24 -31.12 16 17 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 18 C 0.01 0.61 5.46 84.65 0.46 1.07 16 19 N -0.92 -54.54 13.29 21.45 0.28 -54.25 16 20 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 21 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.01 0.36 9.52 22.26 0.21 0.57 16 25 C -0.22 -4.80 9.04 22.37 0.20 -4.60 16 26 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.08 0.82 7.66 -2.38 -0.02 0.80 16 34 H 0.08 0.83 7.67 -2.39 -0.02 0.81 16 35 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 36 H 0.14 4.70 7.61 -2.91 -0.02 4.68 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 2.45 7.94 -2.38 -0.02 2.43 16 39 H 0.09 2.27 7.79 -2.39 -0.02 2.25 16 40 H 0.02 1.09 7.61 -2.39 -0.02 1.07 16 41 H 0.03 1.58 7.96 -2.39 -0.02 1.56 16 42 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.16 3.49 7.61 -2.91 -0.02 3.47 16 44 H 0.17 2.30 6.30 -2.91 -0.02 2.29 16 Total: -1.00 -73.25 380.28 1.14 -72.11 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.97 Total: 9.83 kcal Atomic # 6 Polarization: -45.14 SS G_CDS: 5.00 Total: -40.14 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -1.44 Total: -98.03 kcal Atomic # 8 Polarization: -95.64 SS G_CDS: -5.11 Total: -100.74 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 110.13 SS G_CDS: -0.32 Total: 109.81 kcal Total: -73.25 1.14 -72.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005978403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.418 kcal (2) G-P(sol) polarization free energy of solvation -73.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds