Wall clock time and date at job start Tue Mar 31 2020 15:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47316 * 2 1 4 4 N 1.46506 * 109.47423 * 185.66407 * 3 2 1 5 5 C 1.36935 * 119.99942 * 82.93669 * 4 3 2 6 6 H 1.08001 * 120.00216 * 171.05875 * 5 4 3 7 7 C 1.38818 * 120.00073 * 351.06708 * 5 4 3 8 8 N 1.31622 * 120.00011 * 1.49019 * 7 5 4 9 9 Si 1.86797 * 120.00143 * 181.49427 * 7 5 4 10 10 H 1.48502 * 109.47350 * 59.99322 * 9 7 5 11 11 H 1.48497 * 109.47279 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46741 * 299.99671 * 9 7 5 13 13 C 1.46496 * 120.00273 * 262.94503 * 4 3 2 14 14 C 1.53003 * 109.47131 * 273.52883 * 13 4 3 15 15 O 1.42900 * 109.47167 * 66.15239 * 14 13 4 16 16 C 1.35904 * 116.99873 * 180.02562 * 15 14 13 17 17 C 1.38727 * 120.05355 * 180.02562 * 16 15 14 18 18 C 1.38146 * 119.94229 * 180.02562 * 17 16 15 19 19 C 1.38269 * 120.05681 * 0.02562 * 18 17 16 20 20 S 1.76196 * 119.94497 * 179.97438 * 19 18 17 21 21 C 1.81395 * 104.45387 * 89.99802 * 20 19 18 22 22 O 1.42102 * 104.27570 * 333.92482 * 20 19 18 23 23 O 1.42106 * 104.27729 * 206.07180 * 20 19 18 24 24 C 1.38270 * 120.10799 * 0.24961 * 19 18 17 25 25 C 1.38142 * 120.05571 * 359.45756 * 24 19 18 26 26 H 1.08994 * 109.47285 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46926 * 300.00180 * 1 2 3 28 28 H 1.08995 * 109.47058 * 59.99779 * 1 2 3 29 29 H 1.09004 * 109.47413 * 239.99638 * 2 1 3 30 30 H 1.09005 * 109.47325 * 119.99754 * 2 1 3 31 31 H 1.09003 * 109.47519 * 65.66458 * 3 2 1 32 32 H 1.09000 * 109.47302 * 305.66455 * 3 2 1 33 33 H 0.96997 * 120.00036 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47613 * 153.52771 * 13 4 3 35 35 H 1.09005 * 109.47109 * 33.52401 * 13 4 3 36 36 H 1.09009 * 109.46739 * 306.15843 * 14 13 4 37 37 H 1.08998 * 109.47398 * 186.15634 * 14 13 4 38 38 H 1.08002 * 120.03032 * 359.97438 * 17 16 15 39 39 H 1.08000 * 119.97165 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.47096 * 59.99585 * 21 20 19 41 41 H 1.09007 * 109.46808 * 299.99951 * 21 20 19 42 42 H 1.08995 * 109.47199 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.96896 * 179.70657 * 24 19 18 44 44 H 1.07999 * 120.02785 * 180.25382 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4987 1.4447 -0.1363 5 6 4.0706 1.3388 -1.3760 6 1 5.1342 1.4847 -1.4943 7 6 3.2834 1.0439 -2.4807 8 7 1.9831 0.8952 -2.3414 9 14 4.0695 0.8582 -4.1650 10 1 5.0638 -0.2443 -4.1284 11 1 3.0210 0.5454 -5.1689 12 1 4.7490 2.1253 -4.5365 13 6 4.3454 1.5602 1.0535 14 6 4.5535 3.0382 1.3900 15 8 3.3077 3.6170 1.7836 16 6 3.3176 4.9344 2.1175 17 6 2.1434 5.5606 2.5096 18 6 2.1561 6.8999 2.8481 19 6 3.3375 7.6163 2.7958 20 16 3.3501 9.3245 3.2274 21 6 3.6849 9.3386 5.0102 22 8 2.0236 9.7619 2.9657 23 8 4.4531 9.8595 2.5086 24 6 4.5080 6.9958 2.3998 25 6 4.5018 5.6553 2.0662 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7619 1.9262 0.9364 32 1 1.5962 1.9848 -0.8349 33 1 1.4331 0.6889 -3.1132 34 1 5.3106 1.0924 0.8595 35 1 3.8620 1.0610 1.8934 36 1 4.9356 3.5602 0.5126 37 1 5.2698 3.1276 2.2067 38 1 1.2201 5.0018 2.5495 39 1 1.2422 7.3880 3.1530 40 1 4.6466 8.8630 5.2030 41 1 2.8986 8.7928 5.5318 42 1 3.7103 10.3682 5.3670 43 1 5.4286 7.5587 2.3552 44 1 5.4171 5.1701 1.7610 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075747913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:03 Heat of formation + Delta-G solvation = -47.408396 kcal Electronic energy + Delta-G solvation = -25830.752440 eV Core-core repulsion = 22070.473132 eV Total energy + Delta-G solvation = -3760.279308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.05119 -37.58470 -37.22320 -36.09605 -36.00138 -32.29168 -31.49533 -31.14457 -30.29642 -29.66534 -28.20276 -25.44004 -24.07672 -22.93411 -22.36812 -20.89000 -19.64819 -19.13666 -18.37685 -17.45542 -16.70618 -16.35713 -16.22142 -15.81908 -15.36407 -14.86683 -14.72593 -13.94731 -13.69264 -13.62960 -13.53691 -13.47792 -13.35193 -13.19606 -13.00028 -12.48415 -12.29177 -12.20964 -12.10534 -11.89476 -11.40604 -11.33261 -11.18051 -11.01544 -10.84270 -10.78089 -10.69937 -10.53592 -10.25206 -9.99396 -9.84016 -9.63818 -9.31929 -9.15446 -8.43356 -8.27038 -6.83189 -5.59772 -3.13197 -0.07827 0.94432 1.25700 2.75829 3.36405 3.39161 3.42620 3.43509 3.45408 3.83892 3.94761 4.45802 4.47912 4.58300 4.73233 4.81940 5.14971 5.25267 5.31710 5.33425 5.39022 5.48891 5.61173 5.83380 5.86354 5.88380 5.94682 6.06093 6.27834 6.29832 6.36817 6.36944 6.55483 6.67855 6.71757 6.90978 7.08640 7.38783 7.48816 7.57084 7.63221 8.00597 8.21652 8.49360 9.29188 9.87245 10.30253 11.29468 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.002783 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.971373 B =10058.739188 C =10545.995411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 C 0.177 3.823 4 N -0.598 5.598 5 C -0.249 4.249 6 H 0.071 0.929 7 C -0.005 4.005 8 N -0.900 5.900 9 Si 0.908 3.092 10 H -0.287 1.287 11 H -0.290 1.290 12 H -0.287 1.287 13 C 0.151 3.849 14 C 0.031 3.969 15 O -0.286 6.286 16 C 0.200 3.800 17 C -0.178 4.178 18 C 0.012 3.988 19 C -0.713 4.713 20 S 2.509 3.491 21 C -0.652 4.652 22 O -0.943 6.943 23 O -0.944 6.944 24 C 0.016 3.984 25 C -0.235 4.235 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.003 0.997 31 H 0.005 0.995 32 H 0.099 0.901 33 H 0.249 0.751 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.139 0.861 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 11.662 15.784 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.154 4.154 3 C 0.053 3.947 4 N -0.319 5.319 5 C -0.378 4.378 6 H 0.089 0.911 7 C -0.201 4.201 8 N -0.548 5.548 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.216 1.216 12 H -0.213 1.213 13 C 0.022 3.978 14 C -0.047 4.047 15 O -0.196 6.196 16 C 0.151 3.849 17 C -0.198 4.198 18 C -0.007 4.007 19 C -0.801 4.801 20 S 2.689 3.311 21 C -0.802 4.802 22 O -0.940 6.940 23 O -0.941 6.941 24 C -0.003 4.003 25 C -0.254 4.254 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.022 0.978 31 H 0.024 0.976 32 H 0.116 0.884 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.157 0.843 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.676 12.139 15.057 19.525 hybrid contribution 0.802 -0.948 -0.509 1.342 sum 3.478 11.192 14.548 18.681 Atomic orbital electron populations 1.21562 0.98642 0.98694 1.00083 1.22181 0.92977 1.00527 0.99685 1.21064 0.81437 0.94539 0.97669 1.44167 1.02104 1.84614 1.00992 1.19277 0.92763 1.41264 0.84520 0.91141 1.24830 0.95868 1.01353 0.98092 1.70248 1.03052 1.53631 1.27868 0.86272 0.77974 0.77832 0.84027 1.21327 1.21625 1.21320 1.20821 0.96362 0.89575 0.91017 1.24263 0.82983 0.99454 0.98034 1.86302 1.35894 1.19293 1.78151 1.19578 0.93700 0.84452 0.87149 1.20597 0.97456 0.94970 1.06749 1.20662 0.96102 0.92687 0.91206 1.30110 1.00374 1.25312 1.24301 1.04779 0.74597 0.74365 0.77361 1.30254 1.12499 1.11378 1.26040 1.93572 1.36890 1.80037 1.83492 1.93570 1.54551 1.77222 1.68750 1.20648 0.96388 0.93636 0.89605 1.21424 0.98423 0.95771 1.09812 0.95460 0.95465 0.92513 0.88937 0.97815 0.97630 0.88368 0.93969 0.91011 0.93444 0.91605 0.93304 0.84260 0.83893 0.85145 0.85077 0.85397 0.84318 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.91 37.15 0.37 -2.30 16 2 C -0.11 -2.64 5.33 -26.74 -0.14 -2.79 16 3 C 0.18 4.25 4.75 -4.04 -0.02 4.23 16 4 N -0.60 -14.20 2.53 -173.23 -0.44 -14.64 16 5 C -0.25 -6.45 9.76 -15.06 -0.15 -6.59 16 6 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 7 C -0.01 -0.14 5.20 -17.43 -0.09 -0.23 16 8 N -0.90 -24.26 7.27 55.49 0.40 -23.86 16 9 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 13 C 0.15 2.86 6.07 -4.04 -0.02 2.84 16 14 C 0.03 0.50 5.08 37.16 0.19 0.69 16 15 O -0.29 -5.06 8.81 -19.44 -0.17 -5.23 16 16 C 0.20 3.10 6.69 -39.22 -0.26 2.84 16 17 C -0.18 -2.48 9.99 -39.43 -0.39 -2.87 16 18 C 0.01 0.15 9.46 -39.60 -0.37 -0.23 16 19 C -0.71 -8.06 5.66 -39.56 -0.22 -8.28 16 20 S 2.51 23.14 5.80 -107.50 -0.62 22.52 16 21 C -0.65 -3.04 10.80 101.05 1.09 -1.95 16 22 O -0.94 -11.70 17.12 -57.54 -0.99 -12.68 16 23 O -0.94 -11.75 17.11 -57.54 -0.98 -12.74 16 24 C 0.02 0.19 9.46 -39.61 -0.37 -0.18 16 25 C -0.23 -3.18 9.04 -39.43 -0.36 -3.54 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.09 2.44 6.03 -51.93 -0.31 2.12 16 30 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.01 0.13 6.97 -51.93 -0.36 -0.24 16 32 H 0.10 2.67 5.91 -51.93 -0.31 2.37 16 33 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 34 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 35 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 36 H 0.07 1.16 7.66 -51.92 -0.40 0.76 16 37 H 0.05 0.64 7.67 -51.93 -0.40 0.25 16 38 H 0.14 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.14 1.36 7.57 -52.49 -0.40 0.96 16 40 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.14 1.34 7.56 -52.49 -0.40 0.95 16 44 H 0.14 1.67 6.30 -52.49 -0.33 1.34 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -33.16 369.67 -9.68 -42.84 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.67 Total: 0.31 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -0.76 Total: -18.37 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.04 Total: -38.50 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -2.14 Total: -30.64 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 23.14 SS G_CDS: -0.62 Total: 22.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.16 -9.68 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075747913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.569 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds