Wall clock time and date at job start Tue Mar 31 2020 15:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47316 * 2 1 4 4 N 1.46506 * 109.47423 * 185.66407 * 3 2 1 5 5 C 1.36935 * 119.99942 * 82.93669 * 4 3 2 6 6 H 1.08001 * 120.00216 * 171.05875 * 5 4 3 7 7 C 1.38818 * 120.00073 * 351.06708 * 5 4 3 8 8 N 1.31622 * 120.00011 * 1.49019 * 7 5 4 9 9 Si 1.86797 * 120.00143 * 181.49427 * 7 5 4 10 10 H 1.48502 * 109.47350 * 59.99322 * 9 7 5 11 11 H 1.48497 * 109.47279 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46741 * 299.99671 * 9 7 5 13 13 C 1.46496 * 120.00273 * 262.94503 * 4 3 2 14 14 C 1.53003 * 109.47131 * 273.52883 * 13 4 3 15 15 O 1.42900 * 109.47167 * 66.15239 * 14 13 4 16 16 C 1.35904 * 116.99873 * 180.02562 * 15 14 13 17 17 C 1.38727 * 120.05355 * 180.02562 * 16 15 14 18 18 C 1.38146 * 119.94229 * 180.02562 * 17 16 15 19 19 C 1.38269 * 120.05681 * 0.02562 * 18 17 16 20 20 S 1.76196 * 119.94497 * 179.97438 * 19 18 17 21 21 C 1.81395 * 104.45387 * 89.99802 * 20 19 18 22 22 O 1.42102 * 104.27570 * 333.92482 * 20 19 18 23 23 O 1.42106 * 104.27729 * 206.07180 * 20 19 18 24 24 C 1.38270 * 120.10799 * 0.24961 * 19 18 17 25 25 C 1.38142 * 120.05571 * 359.45756 * 24 19 18 26 26 H 1.08994 * 109.47285 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46926 * 300.00180 * 1 2 3 28 28 H 1.08995 * 109.47058 * 59.99779 * 1 2 3 29 29 H 1.09004 * 109.47413 * 239.99638 * 2 1 3 30 30 H 1.09005 * 109.47325 * 119.99754 * 2 1 3 31 31 H 1.09003 * 109.47519 * 65.66458 * 3 2 1 32 32 H 1.09000 * 109.47302 * 305.66455 * 3 2 1 33 33 H 0.96997 * 120.00036 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47613 * 153.52771 * 13 4 3 35 35 H 1.09005 * 109.47109 * 33.52401 * 13 4 3 36 36 H 1.09009 * 109.46739 * 306.15843 * 14 13 4 37 37 H 1.08998 * 109.47398 * 186.15634 * 14 13 4 38 38 H 1.08002 * 120.03032 * 359.97438 * 17 16 15 39 39 H 1.08000 * 119.97165 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.47096 * 59.99585 * 21 20 19 41 41 H 1.09007 * 109.46808 * 299.99951 * 21 20 19 42 42 H 1.08995 * 109.47199 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.96896 * 179.70657 * 24 19 18 44 44 H 1.07999 * 120.02785 * 180.25382 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4987 1.4447 -0.1363 5 6 4.0706 1.3388 -1.3760 6 1 5.1342 1.4847 -1.4943 7 6 3.2834 1.0439 -2.4807 8 7 1.9831 0.8952 -2.3414 9 14 4.0695 0.8582 -4.1650 10 1 5.0638 -0.2443 -4.1284 11 1 3.0210 0.5454 -5.1689 12 1 4.7490 2.1253 -4.5365 13 6 4.3454 1.5602 1.0535 14 6 4.5535 3.0382 1.3900 15 8 3.3077 3.6170 1.7836 16 6 3.3176 4.9344 2.1175 17 6 2.1434 5.5606 2.5096 18 6 2.1561 6.8999 2.8481 19 6 3.3375 7.6163 2.7958 20 16 3.3501 9.3245 3.2274 21 6 3.6849 9.3386 5.0102 22 8 2.0236 9.7619 2.9657 23 8 4.4531 9.8595 2.5086 24 6 4.5080 6.9958 2.3998 25 6 4.5018 5.6553 2.0662 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7619 1.9262 0.9364 32 1 1.5962 1.9848 -0.8349 33 1 1.4331 0.6889 -3.1132 34 1 5.3106 1.0924 0.8595 35 1 3.8620 1.0610 1.8934 36 1 4.9356 3.5602 0.5126 37 1 5.2698 3.1276 2.2067 38 1 1.2201 5.0018 2.5495 39 1 1.2422 7.3880 3.1530 40 1 4.6466 8.8630 5.2030 41 1 2.8986 8.7928 5.5318 42 1 3.7103 10.3682 5.3670 43 1 5.4286 7.5587 2.3552 44 1 5.4171 5.1701 1.7610 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075747913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:46 Heat of formation + Delta-G solvation = -68.757838 kcal Electronic energy + Delta-G solvation = -25831.678221 eV Core-core repulsion = 22070.473132 eV Total energy + Delta-G solvation = -3761.205089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 16.98 seconds Orbital eigenvalues (eV) -41.16264 -38.81180 -38.06710 -37.73981 -36.89376 -33.91977 -33.37074 -32.17623 -31.36324 -30.19871 -29.68869 -27.32477 -25.52137 -23.96659 -23.72373 -22.40822 -21.46277 -19.95494 -19.45310 -18.71458 -18.21467 -17.35728 -17.22880 -17.06264 -16.54985 -16.25463 -15.73346 -15.54116 -15.26388 -14.78900 -14.74331 -14.60737 -14.37031 -13.99476 -13.87572 -13.77437 -13.63354 -13.42222 -13.07761 -13.05467 -12.97829 -12.75668 -12.72471 -12.55483 -12.22740 -12.08731 -11.94844 -11.89579 -11.75354 -11.65514 -11.60445 -11.46477 -11.21440 -10.22378 -10.13809 -9.52288 -8.71893 -7.58620 -5.11430 -0.76212 -0.05559 0.26002 1.49620 1.49909 1.55848 1.99732 2.26037 2.45048 2.54660 3.12489 3.26046 3.39657 3.67908 3.71925 3.83843 4.13841 4.17925 4.24159 4.27741 4.36468 4.42754 4.47755 4.55780 4.62042 4.72822 4.78759 4.90144 4.97096 5.00283 5.02453 5.06660 5.07692 5.10524 5.25647 5.29522 5.58473 5.63765 5.66495 5.68362 6.02852 6.29218 6.41390 6.51379 7.30295 7.99034 8.38094 9.28473 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.002783 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.971373 B =10058.739188 C =10545.995411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 C 0.189 3.811 4 N -0.616 5.616 5 C -0.255 4.255 6 H 0.076 0.924 7 C -0.056 4.056 8 N -0.915 5.915 9 Si 0.964 3.036 10 H -0.282 1.282 11 H -0.299 1.299 12 H -0.286 1.286 13 C 0.146 3.854 14 C 0.042 3.958 15 O -0.313 6.313 16 C 0.169 3.831 17 C -0.193 4.193 18 C 0.010 3.990 19 C -0.710 4.710 20 S 2.517 3.483 21 C -0.622 4.622 22 O -0.980 6.980 23 O -0.980 6.980 24 C 0.011 3.989 25 C -0.241 4.241 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.009 0.991 31 H 0.011 0.989 32 H 0.063 0.937 33 H 0.240 0.760 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.139 0.861 39 H 0.165 0.835 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.161 0.839 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 12.967 18.214 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.146 4.146 3 C 0.064 3.936 4 N -0.337 5.337 5 C -0.385 4.385 6 H 0.094 0.906 7 C -0.250 4.250 8 N -0.564 5.564 9 Si 0.794 3.206 10 H -0.208 1.208 11 H -0.225 1.225 12 H -0.213 1.213 13 C 0.019 3.981 14 C -0.036 4.036 15 O -0.226 6.226 16 C 0.121 3.879 17 C -0.213 4.213 18 C -0.008 4.008 19 C -0.796 4.796 20 S 2.700 3.300 21 C -0.776 4.776 22 O -0.977 6.977 23 O -0.978 6.978 24 C -0.008 4.008 25 C -0.261 4.261 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.157 0.843 39 H 0.183 0.817 40 H 0.171 0.829 41 H 0.171 0.829 42 H 0.172 0.828 43 H 0.179 0.821 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.713 13.431 17.464 22.342 hybrid contribution 0.514 -1.205 -1.092 1.705 sum 4.227 12.226 16.372 20.866 Atomic orbital electron populations 1.21449 0.96573 0.99875 1.00153 1.22007 0.94852 0.99525 0.98197 1.20773 0.81997 0.94601 0.96235 1.44327 1.02395 1.85131 1.01856 1.19580 0.93070 1.40250 0.85611 0.90610 1.25473 0.96477 1.02242 1.00827 1.70462 1.03701 1.54557 1.27689 0.85390 0.76916 0.77607 0.80672 1.20790 1.22537 1.21298 1.21029 0.96223 0.91404 0.89408 1.23937 0.83579 0.97211 0.98835 1.86221 1.36334 1.20794 1.79202 1.19817 0.95038 0.83865 0.89164 1.20794 0.97210 0.95995 1.07288 1.20958 0.97349 0.91944 0.90567 1.30551 0.99840 1.26391 1.22775 1.04549 0.73107 0.72665 0.79675 1.30021 1.14508 1.13893 1.19226 1.93526 1.38586 1.80039 1.85540 1.93524 1.55152 1.77269 1.71808 1.20972 0.97647 0.93179 0.89004 1.21600 0.98145 0.96541 1.09793 0.93698 0.93630 0.94125 0.92188 0.97227 0.97045 0.91911 0.94992 0.89739 0.92806 0.93233 0.89565 0.84327 0.81723 0.82899 0.82870 0.82827 0.82118 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 430. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 9.91 71.98 0.71 -4.22 16 2 C -0.11 -4.97 5.33 30.59 0.16 -4.81 16 3 C 0.19 9.27 4.75 86.38 0.41 9.68 16 4 N -0.62 -29.59 2.53 -701.99 -1.78 -31.37 16 5 C -0.26 -13.39 9.76 84.04 0.82 -12.57 16 6 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 7 C -0.06 -3.04 5.20 84.86 0.44 -2.60 16 8 N -0.92 -50.97 7.27 21.65 0.16 -50.81 16 9 Si 0.96 44.64 29.55 68.60 2.03 46.67 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 12 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 13 C 0.15 5.47 6.07 86.38 0.52 5.99 16 14 C 0.04 1.35 5.08 71.98 0.37 1.72 16 15 O -0.31 -11.17 8.81 -92.47 -0.81 -11.99 16 16 C 0.17 5.23 6.69 22.50 0.15 5.38 16 17 C -0.19 -5.38 9.99 22.37 0.22 -5.15 16 18 C 0.01 0.24 9.46 22.26 0.21 0.45 16 19 C -0.71 -14.87 5.66 22.28 0.13 -14.75 16 20 S 2.52 40.91 5.80 -56.49 -0.33 40.58 16 21 C -0.62 -2.80 10.80 113.37 1.22 -1.58 16 22 O -0.98 -22.93 17.12 -127.65 -2.19 -25.12 16 23 O -0.98 -22.89 17.11 -127.65 -2.18 -25.07 16 24 C 0.01 0.24 9.46 22.25 0.21 0.45 16 25 C -0.24 -6.36 9.04 22.36 0.20 -6.16 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 3.23 6.03 -2.39 -0.01 3.22 16 30 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.01 0.54 6.97 -2.39 -0.02 0.52 16 32 H 0.06 3.55 5.91 -2.39 -0.01 3.54 16 33 H 0.24 13.31 8.31 -92.71 -0.77 12.53 16 34 H 0.08 2.89 8.01 -2.39 -0.02 2.87 16 35 H 0.05 1.93 8.10 -2.38 -0.02 1.91 16 36 H 0.05 1.75 7.66 -2.38 -0.02 1.73 16 37 H 0.09 2.12 7.67 -2.39 -0.02 2.10 16 38 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 39 H 0.17 2.89 7.57 -2.91 -0.02 2.86 16 40 H 0.15 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.15 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.16 2.78 7.56 -2.91 -0.02 2.75 16 44 H 0.15 3.41 6.30 -2.91 -0.02 3.40 16 Total: -1.00 -74.08 369.67 1.67 -72.41 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.99 Total: 12.87 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 5.78 Total: -28.17 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -1.62 Total: -82.18 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -5.18 Total: -62.18 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 40.91 SS G_CDS: -0.33 Total: 40.58 kcal Total: -74.08 1.67 -72.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075747913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.653 kcal (2) G-P(sol) polarization free energy of solvation -74.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.98 seconds