Wall clock time and date at job start Tue Mar 31 2020 15:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00326 * 2 1 4 4 C 1.52994 * 109.47328 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47061 * 175.00430 * 4 3 2 6 6 N 1.46502 * 109.47447 * 295.00360 * 4 3 2 7 7 S 1.65602 * 120.00028 * 246.19609 * 6 4 3 8 8 O 1.42097 * 106.39994 * 309.98182 * 7 6 4 9 9 O 1.42099 * 106.40033 * 177.05672 * 7 6 4 10 10 C 1.76204 * 107.21830 * 63.52125 * 7 6 4 11 11 C 1.38632 * 119.74797 * 89.99996 * 10 7 6 12 12 C 1.37620 * 120.24817 * 179.70491 * 11 10 7 13 13 C 1.40723 * 119.74077 * 0.27083 * 12 11 10 14 14 C 1.41403 * 120.24075 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99890 * 209.13727 * 14 13 12 16 16 C 1.39949 * 120.00014 * 29.13334 * 14 13 12 17 17 N 1.30823 * 119.99760 * 11.42493 * 16 14 13 18 18 Si 1.86796 * 119.99807 * 191.41556 * 16 14 13 19 19 H 1.48504 * 109.47017 * 60.00917 * 18 16 14 20 20 H 1.48501 * 109.47223 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47502 * 300.00808 * 18 16 14 22 22 C 1.40710 * 119.51231 * 0.02562 * 13 12 11 23 23 C 1.37611 * 119.74641 * 359.97438 * 22 13 12 24 24 C 1.52998 * 109.47141 * 55.00247 * 4 3 2 25 25 C 1.53002 * 109.47176 * 63.96269 * 24 4 3 26 26 C 1.52998 * 109.47386 * 183.95997 * 24 4 3 27 27 H 1.08999 * 109.47024 * 59.99885 * 1 2 3 28 28 H 1.09004 * 109.47086 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47373 * 299.99936 * 1 2 3 30 30 H 1.09005 * 109.46352 * 59.99900 * 3 2 1 31 31 H 1.08997 * 109.47321 * 300.00583 * 3 2 1 32 32 H 0.96997 * 119.99772 * 66.18630 * 6 4 3 33 33 H 1.07997 * 119.87694 * 359.97438 * 11 10 7 34 34 H 1.07997 * 120.13117 * 180.29719 * 12 11 10 35 35 H 0.97006 * 119.99649 * 179.97438 * 17 16 14 36 36 H 1.08003 * 120.12277 * 180.02562 * 22 13 12 37 37 H 1.08007 * 119.87730 * 180.02562 * 23 22 13 38 38 H 1.08997 * 109.46959 * 303.96478 * 24 4 3 39 39 H 1.09002 * 109.46766 * 59.99802 * 25 24 4 40 40 H 1.08997 * 109.47213 * 179.97438 * 25 24 4 41 41 H 1.08998 * 109.47185 * 300.00253 * 25 24 4 42 42 H 1.09008 * 109.46951 * 65.40820 * 26 24 4 43 43 H 1.08995 * 109.47818 * 185.41198 * 26 24 4 44 44 H 1.08998 * 109.47238 * 305.41863 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9785 2.1764 -0.0888 6 7 3.9757 0.5642 1.2527 7 16 4.8688 1.4374 2.3401 8 8 5.9327 2.0259 1.6047 9 8 5.0748 0.5902 3.4622 10 6 3.8557 2.7662 2.8994 11 6 3.0472 2.5935 4.0122 12 6 2.2564 3.6264 4.4615 13 6 2.2666 4.8594 3.7834 14 6 1.4587 5.9279 4.2362 15 1 1.0893 6.6607 3.5342 16 6 1.1379 6.0358 5.5942 17 7 1.7571 5.2913 6.4737 18 14 -0.1744 7.2430 6.1507 19 1 -1.4667 6.9029 5.5027 20 1 -0.3246 7.1657 7.6260 21 1 0.2248 8.6206 5.7657 22 6 3.0866 5.0211 2.6514 23 6 3.8690 3.9746 2.2200 24 6 3.9790 0.3193 -1.1807 25 6 3.6064 1.0156 -2.4911 26 6 5.4944 0.1167 -1.1239 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6886 1.8462 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.7440 -0.3579 1.4448 33 1 3.0410 1.6464 4.5310 34 1 1.6309 3.4913 5.3315 35 1 1.5350 5.3664 7.4150 36 1 3.1023 5.9633 2.1237 37 1 4.4996 4.0965 1.3515 38 1 3.4807 -0.6487 -1.1292 39 1 4.1046 1.9838 -2.5425 40 1 3.9228 0.3994 -3.3327 41 1 2.5268 1.1600 -2.5316 42 1 5.7504 -0.4636 -0.2373 43 1 5.8233 -0.4174 -2.0152 44 1 5.9892 1.0868 -1.0783 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081300383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:36 Heat of formation + Delta-G solvation = -124.723633 kcal Electronic energy + Delta-G solvation = -26867.948958 eV Core-core repulsion = 23104.317010 eV Total energy + Delta-G solvation = -3763.631948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.71328 -37.60096 -36.57714 -36.17500 -35.09673 -34.01353 -32.69173 -30.26023 -29.51778 -28.92532 -26.83872 -25.99730 -25.80302 -22.98922 -21.50047 -21.22054 -20.06873 -18.87792 -17.62253 -17.15852 -16.58971 -16.31360 -15.91174 -15.54382 -15.49335 -15.24846 -14.49714 -14.15053 -14.02692 -13.45742 -13.24387 -13.18687 -12.75583 -12.46957 -12.40824 -12.17450 -12.12338 -12.05032 -11.82109 -11.53338 -11.43210 -11.36528 -11.31824 -11.30206 -11.23156 -10.92063 -10.88477 -10.75276 -10.52047 -10.41575 -9.77109 -9.67641 -9.54973 -9.50857 -9.00505 -7.93202 -7.72876 -7.08631 -4.82178 1.27006 2.23158 2.86811 2.88520 2.90576 2.92184 3.66210 3.71046 3.86876 4.26709 4.54200 4.73609 4.92785 5.05731 5.21072 5.29054 5.33624 5.34918 5.41305 5.48399 5.50762 5.62209 5.67165 5.77135 5.93274 5.95879 5.98404 6.01937 6.09118 6.14567 6.19354 6.45165 6.55053 6.66286 6.71654 6.90338 7.01251 7.20374 7.32337 7.36308 7.42653 7.60911 7.75202 7.96176 8.31479 8.50500 8.62390 9.82792 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.003906 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.406344 B = 7166.667241 C = 7939.156795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.044 3.956 4 C 0.169 3.831 5 H 0.101 0.899 6 N -1.114 6.114 7 S 2.690 3.310 8 O -0.983 6.983 9 O -0.984 6.984 10 C -0.783 4.783 11 C -0.015 4.015 12 C -0.177 4.177 13 C 0.141 3.859 14 C -0.441 4.441 15 H 0.086 0.914 16 C 0.071 3.929 17 N -0.774 5.774 18 Si 0.919 3.081 19 H -0.261 1.261 20 H -0.275 1.275 21 H -0.262 1.262 22 C -0.234 4.234 23 C -0.004 4.004 24 C -0.099 4.099 25 C -0.147 4.147 26 C -0.148 4.148 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.414 0.586 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.289 0.711 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 -6.603 -11.489 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.034 4.034 4 C 0.061 3.939 5 H 0.119 0.881 6 N -0.869 5.869 7 S 2.788 3.212 8 O -0.973 6.973 9 O -0.975 6.975 10 C -0.879 4.879 11 C -0.035 4.035 12 C -0.198 4.198 13 C 0.138 3.862 14 C -0.469 4.469 15 H 0.104 0.896 16 C -0.151 4.151 17 N -0.397 5.397 18 Si 0.743 3.257 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.186 1.186 22 C -0.255 4.255 23 C -0.024 4.024 24 C -0.119 4.119 25 C -0.205 4.205 26 C -0.205 4.205 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.247 0.753 33 H 0.121 0.879 34 H 0.140 0.860 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.769 -6.854 -11.014 13.093 hybrid contribution -1.555 0.897 0.611 1.897 sum -3.325 -5.957 -10.403 12.440 Atomic orbital electron populations 1.22708 0.81475 1.02298 1.00041 1.87816 1.19222 1.27807 1.95438 1.23114 0.93975 0.85024 1.01313 1.20783 0.91868 0.97241 0.83994 0.88130 1.55700 1.74249 1.25448 1.31517 1.01354 0.73956 0.73659 0.72222 1.93489 1.52395 1.78555 1.72837 1.93498 1.85561 1.67628 1.50826 1.29236 1.29352 1.15228 1.14049 1.20280 0.92752 0.97968 0.92513 1.21372 1.03115 0.92448 1.02830 1.17863 0.87273 0.91823 0.89250 1.19870 1.25305 1.08507 0.93196 0.89624 1.26102 0.95790 0.96455 0.96706 1.69789 1.33215 1.32909 1.03761 0.86169 0.80792 0.80617 0.78153 1.18502 1.19929 1.18624 1.21071 1.03165 0.98132 1.03121 1.20180 0.94655 0.91836 0.95769 1.21348 0.96765 1.00118 0.93699 1.21863 1.01375 1.00653 0.96594 1.21840 0.95011 1.02533 1.01164 0.94441 0.90006 0.93874 0.91656 0.92497 0.75266 0.87870 0.85963 0.89987 0.88160 0.87851 0.89849 0.92494 0.92575 0.92523 0.92725 0.93058 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -4.88 9.70 -35.23 -0.34 -5.22 16 3 C 0.04 0.57 5.37 37.15 0.20 0.77 16 4 C 0.17 2.27 2.28 -67.93 -0.16 2.12 16 5 H 0.10 1.39 7.62 -51.93 -0.40 0.99 16 6 N -1.11 -16.69 4.50 -4.89 -0.02 -16.72 16 7 S 2.69 51.50 5.61 -107.50 -0.60 50.90 16 8 O -0.98 -20.20 16.82 -57.17 -0.96 -21.17 16 9 O -0.98 -21.47 17.26 -57.17 -0.99 -22.46 16 10 C -0.78 -16.86 5.94 -39.29 -0.23 -17.09 16 11 C -0.01 -0.34 9.49 -39.66 -0.38 -0.72 16 12 C -0.18 -4.38 8.66 -38.87 -0.34 -4.71 16 13 C 0.14 3.51 5.54 -106.82 -0.59 2.92 16 14 C -0.44 -10.67 9.06 -37.74 -0.34 -11.01 16 15 H 0.09 1.94 7.87 -52.49 -0.41 1.53 16 16 C 0.07 1.63 5.24 -17.34 -0.09 1.53 16 17 N -0.77 -18.65 10.90 55.55 0.61 -18.04 16 18 Si 0.92 17.01 29.57 -169.99 -5.03 11.99 16 19 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 20 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 21 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 22 C -0.23 -5.36 9.80 -38.88 -0.38 -5.74 16 23 C 0.00 -0.09 9.49 -39.66 -0.38 -0.47 16 24 C -0.10 -1.15 2.54 -90.62 -0.23 -1.38 16 25 C -0.15 -1.44 8.93 37.16 0.33 -1.10 16 26 C -0.15 -1.79 8.90 37.16 0.33 -1.46 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.63 6.79 -51.93 -0.35 0.28 16 32 H 0.41 5.59 8.96 -34.47 -0.31 5.28 16 33 H 0.10 2.24 7.60 -52.49 -0.40 1.84 16 34 H 0.12 3.08 6.28 -52.49 -0.33 2.75 16 35 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 36 H 0.10 2.11 8.06 -52.48 -0.42 1.68 16 37 H 0.10 1.97 7.60 -52.48 -0.40 1.57 16 38 H 0.08 0.97 7.43 -51.93 -0.39 0.58 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.53 6.65 -51.93 -0.35 0.18 16 42 H 0.05 0.69 7.69 -51.92 -0.40 0.30 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -29.36 373.92 -9.51 -38.87 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.67 Total: 11.12 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: -1.14 Total: -34.91 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.58 Total: -34.76 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -2.29 Total: -48.84 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.99 kcal Atomic # 16 Polarization: 51.50 SS G_CDS: -0.60 Total: 50.90 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.36 -9.51 -38.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081300383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.856 kcal (2) G-P(sol) polarization free energy of solvation -29.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds