Wall clock time and date at job start Tue Mar 31 2020 15:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00326 * 2 1 4 4 C 1.52994 * 109.47328 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47061 * 175.00430 * 4 3 2 6 6 N 1.46502 * 109.47447 * 295.00360 * 4 3 2 7 7 S 1.65602 * 120.00028 * 246.19609 * 6 4 3 8 8 O 1.42097 * 106.39994 * 309.98182 * 7 6 4 9 9 O 1.42099 * 106.40033 * 177.05672 * 7 6 4 10 10 C 1.76204 * 107.21830 * 63.52125 * 7 6 4 11 11 C 1.38632 * 119.74797 * 89.99996 * 10 7 6 12 12 C 1.37620 * 120.24817 * 179.70491 * 11 10 7 13 13 C 1.40723 * 119.74077 * 0.27083 * 12 11 10 14 14 C 1.41403 * 120.24075 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99890 * 209.13727 * 14 13 12 16 16 C 1.39949 * 120.00014 * 29.13334 * 14 13 12 17 17 N 1.30823 * 119.99760 * 11.42493 * 16 14 13 18 18 Si 1.86796 * 119.99807 * 191.41556 * 16 14 13 19 19 H 1.48504 * 109.47017 * 60.00917 * 18 16 14 20 20 H 1.48501 * 109.47223 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47502 * 300.00808 * 18 16 14 22 22 C 1.40710 * 119.51231 * 0.02562 * 13 12 11 23 23 C 1.37611 * 119.74641 * 359.97438 * 22 13 12 24 24 C 1.52998 * 109.47141 * 55.00247 * 4 3 2 25 25 C 1.53002 * 109.47176 * 63.96269 * 24 4 3 26 26 C 1.52998 * 109.47386 * 183.95997 * 24 4 3 27 27 H 1.08999 * 109.47024 * 59.99885 * 1 2 3 28 28 H 1.09004 * 109.47086 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47373 * 299.99936 * 1 2 3 30 30 H 1.09005 * 109.46352 * 59.99900 * 3 2 1 31 31 H 1.08997 * 109.47321 * 300.00583 * 3 2 1 32 32 H 0.96997 * 119.99772 * 66.18630 * 6 4 3 33 33 H 1.07997 * 119.87694 * 359.97438 * 11 10 7 34 34 H 1.07997 * 120.13117 * 180.29719 * 12 11 10 35 35 H 0.97006 * 119.99649 * 179.97438 * 17 16 14 36 36 H 1.08003 * 120.12277 * 180.02562 * 22 13 12 37 37 H 1.08007 * 119.87730 * 180.02562 * 23 22 13 38 38 H 1.08997 * 109.46959 * 303.96478 * 24 4 3 39 39 H 1.09002 * 109.46766 * 59.99802 * 25 24 4 40 40 H 1.08997 * 109.47213 * 179.97438 * 25 24 4 41 41 H 1.08998 * 109.47185 * 300.00253 * 25 24 4 42 42 H 1.09008 * 109.46951 * 65.40820 * 26 24 4 43 43 H 1.08995 * 109.47818 * 185.41198 * 26 24 4 44 44 H 1.08998 * 109.47238 * 305.41863 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9785 2.1764 -0.0888 6 7 3.9757 0.5642 1.2527 7 16 4.8688 1.4374 2.3401 8 8 5.9327 2.0259 1.6047 9 8 5.0748 0.5902 3.4622 10 6 3.8557 2.7662 2.8994 11 6 3.0472 2.5935 4.0122 12 6 2.2564 3.6264 4.4615 13 6 2.2666 4.8594 3.7834 14 6 1.4587 5.9279 4.2362 15 1 1.0893 6.6607 3.5342 16 6 1.1379 6.0358 5.5942 17 7 1.7571 5.2913 6.4737 18 14 -0.1744 7.2430 6.1507 19 1 -1.4667 6.9029 5.5027 20 1 -0.3246 7.1657 7.6260 21 1 0.2248 8.6206 5.7657 22 6 3.0866 5.0211 2.6514 23 6 3.8690 3.9746 2.2200 24 6 3.9790 0.3193 -1.1807 25 6 3.6064 1.0156 -2.4911 26 6 5.4944 0.1167 -1.1239 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6886 1.8462 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.7440 -0.3579 1.4448 33 1 3.0410 1.6464 4.5310 34 1 1.6309 3.4913 5.3315 35 1 1.5350 5.3664 7.4150 36 1 3.1023 5.9633 2.1237 37 1 4.4996 4.0965 1.3515 38 1 3.4807 -0.6487 -1.1292 39 1 4.1046 1.9838 -2.5425 40 1 3.9228 0.3994 -3.3327 41 1 2.5268 1.1600 -2.5316 42 1 5.7504 -0.4636 -0.2373 43 1 5.8233 -0.4174 -2.0152 44 1 5.9892 1.0868 -1.0783 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081300383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:36 Heat of formation + Delta-G solvation = -143.650043 kcal Electronic energy + Delta-G solvation = -26868.769669 eV Core-core repulsion = 23104.317010 eV Total energy + Delta-G solvation = -3764.452659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.74932 -39.37479 -38.13456 -37.26862 -36.76339 -35.76900 -33.80277 -32.05475 -31.31757 -29.96029 -27.70268 -27.59441 -26.88560 -24.01334 -23.26911 -23.00356 -21.11147 -20.36255 -19.40802 -18.69545 -18.10390 -17.56886 -17.13167 -16.91365 -16.64608 -16.30880 -15.97392 -15.77191 -15.17914 -15.03743 -14.86477 -14.15551 -14.12492 -13.95835 -13.73182 -13.63678 -13.54887 -13.13256 -13.06966 -12.99301 -12.90952 -12.90716 -12.86238 -12.57711 -12.56726 -12.31037 -12.03366 -11.91969 -11.73994 -11.55946 -11.44956 -11.35388 -11.19726 -10.51244 -10.27868 -9.73724 -9.55043 -8.81393 -6.65877 -0.30216 0.46996 1.04109 1.36154 1.43978 1.49686 2.11774 2.24787 2.56192 2.86397 2.98432 3.51063 3.60590 3.72058 3.98913 4.16280 4.27451 4.30024 4.35698 4.40976 4.48079 4.58420 4.63659 4.69200 4.87153 4.88507 4.90360 4.94548 4.96759 4.99981 5.10392 5.13800 5.18894 5.22649 5.31890 5.53092 5.53537 5.57825 5.62396 5.75239 5.93458 6.16052 6.20798 6.27559 6.50127 6.69487 6.80410 8.13117 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.003906 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.406344 B = 7166.667241 C = 7939.156795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.394 6.394 3 C 0.047 3.953 4 C 0.160 3.840 5 H 0.098 0.902 6 N -1.099 6.099 7 S 2.719 3.281 8 O -0.992 6.992 9 O -1.010 7.010 10 C -0.789 4.789 11 C -0.022 4.022 12 C -0.200 4.200 13 C 0.115 3.885 14 C -0.471 4.471 15 H 0.093 0.907 16 C 0.031 3.969 17 N -0.810 5.810 18 Si 0.993 3.007 19 H -0.255 1.255 20 H -0.268 1.268 21 H -0.256 1.256 22 C -0.248 4.248 23 C -0.003 4.003 24 C -0.092 4.092 25 C -0.145 4.145 26 C -0.151 4.151 27 H 0.053 0.947 28 H 0.099 0.901 29 H 0.032 0.968 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.423 0.577 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.296 0.704 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.441 -6.731 -13.307 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C -0.031 4.031 4 C 0.053 3.947 5 H 0.116 0.884 6 N -0.858 5.858 7 S 2.814 3.186 8 O -0.982 6.982 9 O -1.001 7.001 10 C -0.882 4.882 11 C -0.042 4.042 12 C -0.220 4.220 13 C 0.111 3.889 14 C -0.498 4.498 15 H 0.111 0.889 16 C -0.186 4.186 17 N -0.434 5.434 18 Si 0.812 3.188 19 H -0.179 1.179 20 H -0.193 1.193 21 H -0.180 1.180 22 C -0.268 4.268 23 C -0.023 4.023 24 C -0.112 4.112 25 C -0.203 4.203 26 C -0.208 4.208 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.259 0.741 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.147 0.853 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.361 -6.972 -12.830 14.791 hybrid contribution -1.316 0.808 1.078 1.883 sum -3.677 -6.164 -11.751 13.770 Atomic orbital electron populations 1.22877 0.80261 1.03609 1.00297 1.87793 1.20549 1.27463 1.95496 1.23028 0.93541 0.85318 1.01206 1.21065 0.92392 0.97546 0.83719 0.88416 1.55303 1.73896 1.25400 1.31243 1.00493 0.73460 0.72765 0.71854 1.93474 1.52918 1.78959 1.72884 1.93459 1.86019 1.67922 1.52700 1.29676 1.28429 1.16672 1.13427 1.20430 0.92821 0.97864 0.93102 1.21357 1.04200 0.93351 1.03106 1.18205 0.88231 0.92179 0.90246 1.20186 1.26366 1.08975 0.94301 0.88863 1.27006 0.97376 0.98019 0.96228 1.69852 1.34633 1.34525 1.04380 0.85071 0.77744 0.78121 0.77823 1.17883 1.19251 1.17969 1.21310 1.03267 0.99283 1.02958 1.20472 0.94274 0.91277 0.96231 1.21307 0.96314 0.99996 0.93603 1.21863 1.01847 1.00785 0.95811 1.21874 0.95332 1.01901 1.01735 0.92825 0.88246 0.94977 0.94107 0.90299 0.74091 0.87281 0.87416 0.89335 0.86725 0.85299 0.89523 0.92372 0.91110 0.91893 0.93757 0.91026 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.39 -9.31 9.70 -148.98 -1.44 -10.75 16 3 C 0.05 1.16 5.37 71.98 0.39 1.55 16 4 C 0.16 4.05 2.28 44.99 0.10 4.15 16 5 H 0.10 2.54 7.62 -2.39 -0.02 2.52 16 6 N -1.10 -31.81 4.50 -169.40 -0.76 -32.57 16 7 S 2.72 102.53 5.61 -56.49 -0.32 102.22 16 8 O -0.99 -39.70 16.82 -128.00 -2.15 -41.86 16 9 O -1.01 -43.82 17.26 -128.00 -2.21 -46.03 16 10 C -0.79 -34.07 5.94 22.46 0.13 -33.93 16 11 C -0.02 -1.05 9.49 22.22 0.21 -0.83 16 12 C -0.20 -10.26 8.66 22.73 0.20 -10.06 16 13 C 0.11 5.86 5.54 -21.29 -0.12 5.74 16 14 C -0.47 -23.26 9.06 23.46 0.21 -23.05 16 15 H 0.09 4.28 7.87 -2.91 -0.02 4.26 16 16 C 0.03 1.46 5.24 85.26 0.45 1.91 16 17 N -0.81 -40.11 10.90 21.83 0.24 -39.87 16 18 Si 0.99 34.72 29.57 68.60 2.03 36.75 16 19 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 20 H -0.27 -8.99 7.11 99.48 0.71 -8.29 16 21 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 22 C -0.25 -11.43 9.80 22.73 0.22 -11.20 16 23 C 0.00 -0.12 9.49 22.22 0.21 0.09 16 24 C -0.09 -1.91 2.54 -10.79 -0.03 -1.94 16 25 C -0.15 -2.40 8.93 71.98 0.64 -1.76 16 26 C -0.15 -3.35 8.90 71.98 0.64 -2.71 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.08 1.58 6.79 -2.39 -0.02 1.56 16 32 H 0.42 10.94 8.96 -96.75 -0.87 10.07 16 33 H 0.11 4.89 7.60 -2.91 -0.02 4.86 16 34 H 0.11 5.73 6.28 -2.91 -0.02 5.71 16 35 H 0.30 13.18 8.30 -92.70 -0.77 12.41 16 36 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 37 H 0.13 4.73 7.60 -2.91 -0.02 4.71 16 38 H 0.09 1.78 7.43 -2.39 -0.02 1.76 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 0.97 6.65 -2.39 -0.02 0.95 16 42 H 0.04 1.05 7.69 -2.38 -0.02 1.04 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -63.35 373.92 0.02 -63.33 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: 0.13 Total: 39.10 kcal Atomic # 6 Polarization: -74.82 SS G_CDS: 4.51 Total: -70.31 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -0.52 Total: -72.44 kcal Atomic # 8 Polarization: -92.83 SS G_CDS: -5.81 Total: -98.64 kcal Atomic # 14 Polarization: 34.72 SS G_CDS: 2.03 Total: 36.75 kcal Atomic # 16 Polarization: 102.53 SS G_CDS: -0.32 Total: 102.22 kcal Total: -63.35 0.02 -63.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081300383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.321 kcal (2) G-P(sol) polarization free energy of solvation -63.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds