Wall clock time and date at job start Tue Mar 31 2020 15:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99962 * 2 1 4 4 C 1.52993 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47492 * 185.00191 * 4 3 2 6 6 N 1.46497 * 109.47170 * 64.99905 * 4 3 2 7 7 S 1.65604 * 119.99859 * 94.12209 * 6 4 3 8 8 O 1.42096 * 106.40052 * 306.67896 * 7 6 4 9 9 O 1.42104 * 106.39826 * 173.76183 * 7 6 4 10 10 C 1.76192 * 107.21776 * 60.22329 * 7 6 4 11 11 C 1.38640 * 119.75413 * 85.78420 * 10 7 6 12 12 C 1.37616 * 120.25165 * 180.27776 * 11 10 7 13 13 C 1.40713 * 119.74548 * 359.51175 * 12 11 10 14 14 C 1.41392 * 120.24665 * 180.23364 * 13 12 11 15 15 H 1.07998 * 119.99973 * 158.79416 * 14 13 12 16 16 C 1.39945 * 119.99967 * 338.79430 * 14 13 12 17 17 N 1.30826 * 120.00156 * 331.28766 * 16 14 13 18 18 Si 1.86797 * 120.00099 * 151.28033 * 16 14 13 19 19 H 1.48494 * 109.47228 * 94.98567 * 18 16 14 20 20 H 1.48507 * 109.47417 * 214.98980 * 18 16 14 21 21 H 1.48505 * 109.47115 * 334.99038 * 18 16 14 22 22 C 1.40724 * 119.50929 * 0.48300 * 13 12 11 23 23 C 1.37617 * 119.74542 * 359.74755 * 22 13 12 24 24 C 1.53001 * 109.47356 * 304.99890 * 4 3 2 25 25 C 1.53002 * 109.47586 * 176.35136 * 24 4 3 26 26 C 1.53004 * 109.47347 * 296.35343 * 24 4 3 27 27 H 1.08997 * 109.46983 * 299.99721 * 1 2 3 28 28 H 1.08994 * 109.46964 * 60.00065 * 1 2 3 29 29 H 1.09006 * 109.46626 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47137 * 59.99818 * 3 2 1 31 31 H 1.08997 * 109.46804 * 300.00038 * 3 2 1 32 32 H 0.97002 * 120.00312 * 274.11951 * 6 4 3 33 33 H 1.08005 * 119.86794 * 359.97438 * 11 10 7 34 34 H 1.08002 * 120.12715 * 179.72046 * 12 11 10 35 35 H 0.97001 * 120.00143 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.12356 * 179.73095 * 22 13 12 37 37 H 1.08000 * 119.87353 * 180.02562 * 23 22 13 38 38 H 1.09001 * 109.47201 * 56.35104 * 24 4 3 39 39 H 1.09001 * 109.46811 * 63.11910 * 25 24 4 40 40 H 1.09001 * 109.47455 * 183.12638 * 25 24 4 41 41 H 1.08997 * 109.46984 * 303.12874 * 25 24 4 42 42 H 1.09001 * 109.46996 * 59.99340 * 26 24 4 43 43 H 1.08998 * 109.47300 * 179.97438 * 26 24 4 44 44 H 1.09001 * 109.46775 * 300.00022 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1766 0.0902 6 7 3.9766 0.5640 -1.2508 7 16 4.4266 1.5123 -2.5317 8 8 3.3490 2.4085 -2.7655 9 8 4.9341 0.6312 -3.5245 10 6 5.7867 2.4975 -1.9988 11 6 7.0750 1.9910 -2.0753 12 6 8.1442 2.7494 -1.6565 13 6 7.9269 4.0476 -1.1589 14 6 9.0182 4.8379 -0.7304 15 1 8.9188 5.9120 -0.6766 16 6 10.2271 4.2284 -0.3761 17 7 10.2303 3.0106 0.1018 18 14 11.8363 5.1537 -0.5857 19 1 12.2003 5.8102 0.6955 20 1 12.9074 4.2019 -0.9762 21 1 11.6804 6.1845 -1.6433 22 6 6.6150 4.5515 -1.0859 23 6 5.5605 3.7734 -1.5059 24 6 3.9781 0.3199 1.1826 25 6 5.4946 0.1237 1.1315 26 6 3.5974 1.0129 2.4925 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 4.0052 -0.4024 -1.3292 33 1 7.2395 0.9954 -2.4604 34 1 9.1465 2.3511 -1.7128 35 1 11.0683 2.5880 0.3470 36 1 6.4365 5.5448 -0.7016 37 1 4.5528 4.1582 -1.4512 38 1 3.4842 -0.6503 1.1280 39 1 5.9896 1.0886 1.2418 40 1 5.8030 -0.5377 1.9412 41 1 5.7716 -0.3194 0.1749 42 1 2.5170 1.1526 2.5290 43 1 3.9123 0.3965 3.3345 44 1 4.0912 1.9831 2.5471 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081300384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:40 Heat of formation + Delta-G solvation = -125.297333 kcal Electronic energy + Delta-G solvation = -26932.627842 eV Core-core repulsion = 23168.971017 eV Total energy + Delta-G solvation = -3763.656825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -38.68413 -37.57089 -36.44905 -36.24459 -35.06866 -34.09615 -32.58978 -30.30247 -29.50042 -28.89547 -26.72597 -25.99690 -25.81878 -22.95442 -21.53125 -21.17575 -19.98461 -18.77262 -17.64651 -17.06318 -16.56017 -16.45295 -15.90314 -15.56478 -15.40889 -15.23880 -14.48671 -14.14579 -13.88158 -13.46280 -13.22457 -13.12862 -12.70619 -12.57775 -12.44659 -12.22384 -12.05126 -11.94121 -11.73072 -11.52151 -11.45640 -11.34399 -11.29109 -11.27455 -11.22370 -10.90117 -10.75162 -10.63641 -10.49960 -10.37850 -9.74543 -9.62473 -9.55065 -9.40107 -8.97579 -8.02880 -7.71851 -7.28069 -4.79842 1.32235 2.26394 2.82864 2.87785 2.91796 2.96343 3.62775 3.71416 3.88043 4.16238 4.55543 4.81498 5.02775 5.14194 5.21598 5.27290 5.33644 5.37297 5.44205 5.53709 5.57154 5.60879 5.67425 5.89718 5.97604 6.06011 6.10397 6.12445 6.15219 6.20251 6.34145 6.58015 6.64081 6.69166 6.72323 6.88397 7.04356 7.19694 7.31435 7.40253 7.45415 7.61881 7.74379 7.93595 8.28113 8.48195 8.63994 9.65500 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.003819 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.621837 B = 7329.665671 C = 8027.575792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.039 3.961 4 C 0.168 3.832 5 H 0.100 0.900 6 N -1.113 6.113 7 S 2.690 3.310 8 O -0.989 6.989 9 O -0.987 6.987 10 C -0.792 4.792 11 C -0.006 4.006 12 C -0.192 4.192 13 C 0.140 3.860 14 C -0.436 4.436 15 H 0.089 0.911 16 C 0.080 3.920 17 N -0.748 5.748 18 Si 0.908 3.092 19 H -0.266 1.266 20 H -0.270 1.270 21 H -0.254 1.254 22 C -0.240 4.240 23 C 0.001 3.999 24 C -0.094 4.094 25 C -0.148 4.148 26 C -0.147 4.147 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.412 0.588 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.291 0.709 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.146 -4.289 5.086 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.039 4.039 4 C 0.060 3.940 5 H 0.118 0.882 6 N -0.869 5.869 7 S 2.789 3.211 8 O -0.979 6.979 9 O -0.978 6.978 10 C -0.888 4.888 11 C -0.026 4.026 12 C -0.212 4.212 13 C 0.136 3.864 14 C -0.462 4.462 15 H 0.107 0.893 16 C -0.145 4.145 17 N -0.369 5.369 18 Si 0.731 3.269 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.178 1.178 22 C -0.261 4.261 23 C -0.019 4.019 24 C -0.114 4.114 25 C -0.205 4.205 26 C -0.205 4.205 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.246 0.754 33 H 0.118 0.882 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.348 -4.497 4.365 11.255 hybrid contribution 1.106 0.407 0.506 1.282 sum -8.243 -4.090 4.871 10.411 Atomic orbital electron populations 1.22709 0.81788 1.02294 0.99822 1.87857 1.18955 1.27880 1.95399 1.23274 0.94487 0.84979 1.01205 1.20799 0.91179 0.97700 0.84349 0.88179 1.55677 1.83166 1.19411 1.28608 1.01294 0.74181 0.73033 0.72566 1.93464 1.54550 1.65598 1.84319 1.93491 1.81437 1.66244 1.56592 1.29056 1.12863 1.10789 1.36062 1.20151 0.91471 0.97203 0.93821 1.21127 0.97598 0.96535 1.05967 1.17771 0.91609 0.91428 0.85549 1.19922 0.94980 0.95684 1.35659 0.89259 1.26141 1.02004 0.94842 0.91517 1.69871 1.30575 1.13481 1.22967 0.86278 0.79740 0.80676 0.80218 1.19049 1.19466 1.17788 1.20980 0.92692 1.00533 1.11895 1.20171 0.97644 0.91880 0.92251 1.21267 0.97050 0.99657 0.93405 1.21833 0.94417 1.02590 1.01697 1.21862 1.01039 1.00890 0.96685 0.94420 0.94165 0.90002 0.92509 0.91615 0.75448 0.88167 0.86929 0.89810 0.88314 0.87837 0.90012 0.91786 0.93165 0.92185 0.92760 0.92534 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.42 16 2 O -0.38 -4.93 9.70 -35.23 -0.34 -5.27 16 3 C 0.04 0.51 5.37 37.15 0.20 0.71 16 4 C 0.17 2.39 2.18 -67.93 -0.15 2.24 16 5 H 0.10 1.50 7.08 -51.93 -0.37 1.14 16 6 N -1.11 -17.34 4.48 -4.89 -0.02 -17.37 16 7 S 2.69 52.21 5.66 -107.50 -0.61 51.60 16 8 O -0.99 -20.70 16.38 -57.17 -0.94 -21.63 16 9 O -0.99 -21.57 17.37 -57.17 -0.99 -22.56 16 10 C -0.79 -17.05 5.58 -39.28 -0.22 -17.27 16 11 C -0.01 -0.14 9.49 -39.66 -0.38 -0.52 16 12 C -0.19 -4.69 8.77 -38.87 -0.34 -5.03 16 13 C 0.14 3.46 5.58 -106.82 -0.60 2.86 16 14 C -0.44 -10.45 8.99 -37.74 -0.34 -10.79 16 15 H 0.09 2.03 7.99 -52.49 -0.42 1.61 16 16 C 0.08 1.79 4.90 -17.34 -0.08 1.71 16 17 N -0.75 -17.20 11.46 55.55 0.64 -16.57 16 18 Si 0.91 16.57 29.64 -169.99 -5.04 11.53 16 19 H -0.27 -4.75 7.11 56.52 0.40 -4.34 16 20 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 21 H -0.25 -4.68 7.11 56.52 0.40 -4.28 16 22 C -0.24 -5.52 9.80 -38.87 -0.38 -5.90 16 23 C 0.00 0.01 8.93 -39.66 -0.35 -0.34 16 24 C -0.09 -1.20 2.46 -90.62 -0.22 -1.42 16 25 C -0.15 -2.10 9.05 37.16 0.34 -1.76 16 26 C -0.15 -1.65 8.92 37.16 0.33 -1.32 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.64 6.78 -51.93 -0.35 0.28 16 31 H 0.07 0.96 7.49 -51.93 -0.39 0.57 16 32 H 0.41 5.74 8.73 -34.47 -0.30 5.44 16 33 H 0.10 2.14 7.70 -52.48 -0.40 1.73 16 34 H 0.11 2.78 6.34 -52.49 -0.33 2.45 16 35 H 0.29 5.97 8.30 -40.82 -0.34 5.63 16 36 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.10 2.02 7.51 -52.49 -0.39 1.63 16 38 H 0.08 1.02 7.44 -51.93 -0.39 0.64 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.88 7.33 -51.93 -0.38 0.50 16 42 H 0.05 0.55 6.64 -51.93 -0.34 0.21 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -28.93 371.42 -9.38 -38.30 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -6.59 Total: 11.78 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: -1.08 Total: -35.42 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.61 Total: -33.93 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -2.27 Total: -49.47 kcal Atomic # 14 Polarization: 16.57 SS G_CDS: -5.04 Total: 11.53 kcal Atomic # 16 Polarization: 52.21 SS G_CDS: -0.61 Total: 51.60 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.93 -9.38 -38.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081300384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.994 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds