Wall clock time and date at job start Tue Mar 31 2020 15:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99962 * 2 1 4 4 C 1.52993 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47492 * 185.00191 * 4 3 2 6 6 N 1.46497 * 109.47170 * 64.99905 * 4 3 2 7 7 S 1.65604 * 119.99859 * 94.12209 * 6 4 3 8 8 O 1.42096 * 106.40052 * 306.67896 * 7 6 4 9 9 O 1.42104 * 106.39826 * 173.76183 * 7 6 4 10 10 C 1.76192 * 107.21776 * 60.22329 * 7 6 4 11 11 C 1.38640 * 119.75413 * 85.78420 * 10 7 6 12 12 C 1.37616 * 120.25165 * 180.27776 * 11 10 7 13 13 C 1.40713 * 119.74548 * 359.51175 * 12 11 10 14 14 C 1.41392 * 120.24665 * 180.23364 * 13 12 11 15 15 H 1.07998 * 119.99973 * 158.79416 * 14 13 12 16 16 C 1.39945 * 119.99967 * 338.79430 * 14 13 12 17 17 N 1.30826 * 120.00156 * 331.28766 * 16 14 13 18 18 Si 1.86797 * 120.00099 * 151.28033 * 16 14 13 19 19 H 1.48494 * 109.47228 * 94.98567 * 18 16 14 20 20 H 1.48507 * 109.47417 * 214.98980 * 18 16 14 21 21 H 1.48505 * 109.47115 * 334.99038 * 18 16 14 22 22 C 1.40724 * 119.50929 * 0.48300 * 13 12 11 23 23 C 1.37617 * 119.74542 * 359.74755 * 22 13 12 24 24 C 1.53001 * 109.47356 * 304.99890 * 4 3 2 25 25 C 1.53002 * 109.47586 * 176.35136 * 24 4 3 26 26 C 1.53004 * 109.47347 * 296.35343 * 24 4 3 27 27 H 1.08997 * 109.46983 * 299.99721 * 1 2 3 28 28 H 1.08994 * 109.46964 * 60.00065 * 1 2 3 29 29 H 1.09006 * 109.46626 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47137 * 59.99818 * 3 2 1 31 31 H 1.08997 * 109.46804 * 300.00038 * 3 2 1 32 32 H 0.97002 * 120.00312 * 274.11951 * 6 4 3 33 33 H 1.08005 * 119.86794 * 359.97438 * 11 10 7 34 34 H 1.08002 * 120.12715 * 179.72046 * 12 11 10 35 35 H 0.97001 * 120.00143 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.12356 * 179.73095 * 22 13 12 37 37 H 1.08000 * 119.87353 * 180.02562 * 23 22 13 38 38 H 1.09001 * 109.47201 * 56.35104 * 24 4 3 39 39 H 1.09001 * 109.46811 * 63.11910 * 25 24 4 40 40 H 1.09001 * 109.47455 * 183.12638 * 25 24 4 41 41 H 1.08997 * 109.46984 * 303.12874 * 25 24 4 42 42 H 1.09001 * 109.46996 * 59.99340 * 26 24 4 43 43 H 1.08998 * 109.47300 * 179.97438 * 26 24 4 44 44 H 1.09001 * 109.46775 * 300.00022 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1766 0.0902 6 7 3.9766 0.5640 -1.2508 7 16 4.4266 1.5123 -2.5317 8 8 3.3490 2.4085 -2.7655 9 8 4.9341 0.6312 -3.5245 10 6 5.7867 2.4975 -1.9988 11 6 7.0750 1.9910 -2.0753 12 6 8.1442 2.7494 -1.6565 13 6 7.9269 4.0476 -1.1589 14 6 9.0182 4.8379 -0.7304 15 1 8.9188 5.9120 -0.6766 16 6 10.2271 4.2284 -0.3761 17 7 10.2303 3.0106 0.1018 18 14 11.8363 5.1537 -0.5857 19 1 12.2003 5.8102 0.6955 20 1 12.9074 4.2019 -0.9762 21 1 11.6804 6.1845 -1.6433 22 6 6.6150 4.5515 -1.0859 23 6 5.5605 3.7734 -1.5059 24 6 3.9781 0.3199 1.1826 25 6 5.4946 0.1237 1.1315 26 6 3.5974 1.0129 2.4925 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 4.0052 -0.4024 -1.3292 33 1 7.2395 0.9954 -2.4604 34 1 9.1465 2.3511 -1.7128 35 1 11.0683 2.5880 0.3470 36 1 6.4365 5.5448 -0.7016 37 1 4.5528 4.1582 -1.4512 38 1 3.4842 -0.6503 1.1280 39 1 5.9896 1.0886 1.2418 40 1 5.8030 -0.5377 1.9412 41 1 5.7716 -0.3194 0.1749 42 1 2.5170 1.1526 2.5290 43 1 3.9123 0.3965 3.3345 44 1 4.0912 1.9831 2.5471 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081300384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:39 Heat of formation + Delta-G solvation = -143.809970 kcal Electronic energy + Delta-G solvation = -26933.430610 eV Core-core repulsion = 23168.971017 eV Total energy + Delta-G solvation = -3764.459594 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.74755 -39.33398 -38.07697 -37.31101 -36.75189 -35.82712 -33.78878 -32.08189 -31.29386 -29.95978 -27.71045 -27.60368 -26.86845 -24.04375 -23.29516 -22.95028 -21.12036 -20.29499 -19.41578 -18.59881 -18.11680 -17.67557 -17.14731 -16.90503 -16.46887 -16.42738 -15.96733 -15.77584 -15.20542 -14.93058 -14.91298 -14.17108 -14.10104 -14.00514 -13.79502 -13.70393 -13.49201 -13.15485 -13.05523 -13.00884 -12.94780 -12.90545 -12.86764 -12.64193 -12.52141 -12.29119 -12.06217 -11.84685 -11.75519 -11.52252 -11.45768 -11.24750 -11.10811 -10.49635 -10.28931 -9.82533 -9.53300 -8.97427 -6.60999 -0.26425 0.52643 1.08841 1.34084 1.41560 1.52888 2.09849 2.24519 2.48810 2.92302 2.95829 3.53428 3.64914 3.72626 3.98753 4.15515 4.27108 4.32818 4.36579 4.42257 4.48462 4.59535 4.64065 4.69384 4.86116 4.87439 4.89864 4.92044 4.94554 4.99563 5.08403 5.13417 5.17125 5.26450 5.30505 5.51296 5.53161 5.60817 5.62846 5.77609 5.93249 6.15724 6.21776 6.29364 6.48541 6.68088 6.83245 8.00042 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.003819 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.621837 B = 7329.665671 C = 8027.575792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.042 3.958 4 C 0.159 3.841 5 H 0.091 0.909 6 N -1.100 6.100 7 S 2.719 3.281 8 O -1.000 7.000 9 O -1.010 7.010 10 C -0.799 4.799 11 C -0.011 4.011 12 C -0.215 4.215 13 C 0.114 3.886 14 C -0.466 4.466 15 H 0.093 0.907 16 C 0.045 3.955 17 N -0.776 5.776 18 Si 0.981 3.019 19 H -0.255 1.255 20 H -0.263 1.263 21 H -0.257 1.257 22 C -0.258 4.258 23 C 0.001 3.999 24 C -0.085 4.085 25 C -0.147 4.147 26 C -0.145 4.145 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.422 0.578 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.301 0.699 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.000 -4.587 6.072 12.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C -0.036 4.036 4 C 0.052 3.948 5 H 0.109 0.891 6 N -0.860 5.860 7 S 2.815 3.185 8 O -0.990 6.990 9 O -1.001 7.001 10 C -0.892 4.892 11 C -0.031 4.031 12 C -0.235 4.235 13 C 0.110 3.890 14 C -0.491 4.491 15 H 0.111 0.889 16 C -0.178 4.178 17 N -0.398 5.398 18 Si 0.800 3.200 19 H -0.179 1.179 20 H -0.187 1.187 21 H -0.181 1.181 22 C -0.278 4.278 23 C -0.019 4.019 24 C -0.105 4.105 25 C -0.205 4.205 26 C -0.203 4.203 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.258 0.742 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.199 -4.790 5.360 12.477 hybrid contribution 1.241 0.407 0.230 1.326 sum -8.957 -4.383 5.590 11.432 Atomic orbital electron populations 1.22919 0.80163 1.03677 1.00538 1.87826 1.20719 1.27444 1.95527 1.23168 0.93335 0.85464 1.01629 1.21020 0.92371 0.97490 0.83961 0.89150 1.55300 1.82604 1.19630 1.28431 1.00431 0.73160 0.72451 0.72419 1.93447 1.54423 1.66376 1.84780 1.93454 1.81802 1.66624 1.58211 1.29431 1.13380 1.11416 1.35005 1.20313 0.91816 0.97476 0.93488 1.21128 0.97565 0.97202 1.07618 1.18092 0.92719 0.91845 0.86294 1.20203 0.96133 0.95976 1.36825 0.88937 1.26953 1.04778 0.95576 0.90499 1.69879 1.32054 1.14731 1.23105 0.85198 0.75303 0.79199 0.80286 1.17900 1.18716 1.18069 1.21197 0.92583 1.01390 1.12608 1.20426 0.98346 0.91727 0.91362 1.21212 0.95745 0.99962 0.93545 1.21821 0.95533 1.01305 1.01798 1.21855 1.01952 1.00489 0.95970 0.92763 0.94394 0.88377 0.90145 0.93166 0.74189 0.87315 0.88085 0.88775 0.87164 0.85719 0.89074 0.94419 0.91700 0.93093 0.91263 0.91395 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.64 16 2 O -0.40 -9.22 9.70 -148.98 -1.45 -10.66 16 3 C 0.04 1.03 5.37 71.98 0.39 1.42 16 4 C 0.16 4.32 2.18 44.99 0.10 4.42 16 5 H 0.09 2.65 7.08 -2.39 -0.02 2.63 16 6 N -1.10 -33.23 4.48 -169.40 -0.76 -33.98 16 7 S 2.72 104.10 5.66 -56.49 -0.32 103.78 16 8 O -1.00 -40.90 16.38 -128.00 -2.10 -43.00 16 9 O -1.01 -43.73 17.37 -128.00 -2.22 -45.96 16 10 C -0.80 -34.63 5.58 22.46 0.13 -34.50 16 11 C -0.01 -0.51 9.49 22.22 0.21 -0.30 16 12 C -0.21 -10.88 8.77 22.73 0.20 -10.68 16 13 C 0.11 5.80 5.58 -21.29 -0.12 5.68 16 14 C -0.47 -22.83 8.99 23.46 0.21 -22.62 16 15 H 0.09 4.30 7.99 -2.91 -0.02 4.28 16 16 C 0.04 2.02 4.90 85.26 0.42 2.44 16 17 N -0.78 -36.33 11.46 21.83 0.25 -36.08 16 18 Si 0.98 33.78 29.64 68.60 2.03 35.81 16 19 H -0.25 -8.29 7.11 99.48 0.71 -7.58 16 20 H -0.26 -8.67 7.11 99.48 0.71 -7.97 16 21 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 22 C -0.26 -12.04 9.80 22.73 0.22 -11.82 16 23 C 0.00 0.05 8.93 22.22 0.20 0.25 16 24 C -0.08 -2.02 2.46 -10.79 -0.03 -2.04 16 25 C -0.15 -4.09 9.05 71.98 0.65 -3.44 16 26 C -0.14 -2.93 8.92 71.98 0.64 -2.29 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.08 1.57 6.78 -2.39 -0.02 1.55 16 31 H 0.05 1.38 7.49 -2.39 -0.02 1.37 16 32 H 0.42 11.23 8.73 -96.74 -0.85 10.39 16 33 H 0.11 4.75 7.70 -2.91 -0.02 4.73 16 34 H 0.10 5.22 6.34 -2.91 -0.02 5.20 16 35 H 0.30 12.44 8.30 -92.71 -0.77 11.67 16 36 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 37 H 0.12 4.78 7.51 -2.91 -0.02 4.76 16 38 H 0.09 2.05 7.44 -2.39 -0.02 2.03 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 1.47 7.33 -2.39 -0.02 1.46 16 42 H 0.07 1.20 6.64 -2.39 -0.02 1.18 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -62.02 371.42 0.06 -61.95 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: 0.16 Total: 39.99 kcal Atomic # 6 Polarization: -76.31 SS G_CDS: 4.47 Total: -71.85 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -0.51 Total: -70.06 kcal Atomic # 8 Polarization: -93.85 SS G_CDS: -5.77 Total: -99.62 kcal Atomic # 14 Polarization: 33.78 SS G_CDS: 2.03 Total: 35.81 kcal Atomic # 16 Polarization: 104.10 SS G_CDS: -0.32 Total: 103.78 kcal Total: -62.02 0.06 -61.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081300384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.856 kcal (2) G-P(sol) polarization free energy of solvation -62.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds