Wall clock time and date at job start Tue Mar 31 2020 14:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47078 * 2 1 4 4 C 1.53001 * 109.47012 * 239.99931 * 2 1 3 5 5 C 1.52999 * 109.47242 * 186.32180 * 4 2 1 6 6 H 1.09008 * 109.47089 * 304.56740 * 5 4 2 7 7 C 1.52997 * 109.47190 * 184.56307 * 5 4 2 8 8 O 1.42895 * 109.47485 * 304.99784 * 7 5 4 9 9 N 1.46505 * 109.47195 * 64.56264 * 5 4 2 10 10 S 1.65601 * 119.99948 * 215.00570 * 9 5 4 11 11 O 1.42101 * 106.39792 * 178.54014 * 10 9 5 12 12 O 1.42102 * 106.39912 * 311.45703 * 10 9 5 13 13 C 1.76191 * 107.21975 * 64.99767 * 10 9 5 14 14 C 1.38635 * 119.74800 * 269.72520 * 13 10 9 15 15 C 1.37629 * 120.24825 * 179.72321 * 14 13 10 16 16 C 1.40721 * 119.74042 * 0.57078 * 15 14 13 17 17 C 1.41396 * 120.24068 * 179.67887 * 16 15 14 18 18 H 1.08004 * 119.99842 * 28.83758 * 17 16 15 19 19 C 1.39942 * 120.00136 * 208.82958 * 17 16 15 20 20 N 1.30828 * 119.99508 * 11.14944 * 19 17 16 21 21 Si 1.86795 * 120.00310 * 191.14648 * 19 17 16 22 22 H 1.48503 * 109.47182 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47129 * 120.00076 * 21 19 17 24 24 H 1.48498 * 109.47530 * 240.00220 * 21 19 17 25 25 C 1.40710 * 119.51424 * 359.70762 * 16 15 14 26 26 C 1.37622 * 119.74419 * 359.97438 * 25 16 15 27 27 H 1.09001 * 109.47262 * 55.17406 * 1 2 3 28 28 H 1.09001 * 109.47256 * 175.17090 * 1 2 3 29 29 H 1.08998 * 109.47050 * 295.16786 * 1 2 3 30 30 H 1.08997 * 109.46983 * 120.00519 * 2 1 3 31 31 H 1.08996 * 109.47028 * 60.00041 * 3 2 1 32 32 H 1.08996 * 109.47145 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46940 * 300.00121 * 3 2 1 34 34 H 1.08997 * 109.47539 * 306.32311 * 4 2 1 35 35 H 1.09000 * 109.47223 * 66.32441 * 4 2 1 36 36 H 1.08995 * 109.47068 * 65.00457 * 7 5 4 37 37 H 1.09011 * 109.46836 * 184.99679 * 7 5 4 38 38 H 0.96695 * 114.00439 * 180.02562 * 8 7 5 39 39 H 0.96999 * 119.99555 * 35.00132 * 9 5 4 40 40 H 1.07993 * 119.87974 * 359.97438 * 14 13 10 41 41 H 1.07995 * 120.12753 * 180.27950 * 15 14 13 42 42 H 0.97004 * 119.99218 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.13153 * 179.97438 * 25 16 15 44 44 H 1.08002 * 119.87362 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5617 -0.8603 -1.1724 6 1 4.0099 0.1235 -1.0325 7 6 4.0835 -1.4786 -2.4710 8 8 3.4101 -2.7151 -2.7142 9 7 3.9168 -1.7237 -0.0433 10 16 5.2914 -1.4218 0.8295 11 8 5.3346 -2.3989 1.8604 12 8 6.3364 -1.2435 -0.1167 13 6 5.0717 0.1338 1.6272 14 6 5.4735 1.2970 0.9888 15 6 5.3016 2.5181 1.6000 16 6 4.7264 2.5819 2.8827 17 6 4.5510 3.8302 3.5232 18 1 4.4029 4.7233 2.9342 19 6 4.5691 3.9085 4.9203 20 7 4.9616 2.8805 5.6280 21 14 4.0329 5.4806 5.7748 22 1 3.6372 6.4870 4.7570 23 1 2.8767 5.1927 6.6611 24 1 5.1579 6.0118 6.5856 25 6 4.3276 1.3943 3.5234 26 6 4.5031 0.1849 2.8906 27 1 -0.3634 0.5869 -0.8436 28 1 -0.3634 -1.0240 -0.0865 29 1 -0.3633 0.4370 0.9301 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.5872 -1.7110 -1.3077 35 1 1.7720 -0.1463 -2.1356 36 1 3.8980 -0.7947 -3.2992 37 1 5.1549 -1.6596 -2.3823 38 1 3.6917 -3.1640 -3.5230 39 1 3.3467 -2.4720 0.1930 40 1 5.9195 1.2451 0.0067 41 1 5.6112 3.4233 1.0991 42 1 4.9745 2.9349 6.5964 43 1 3.8854 1.4316 4.5080 44 1 4.1974 -0.7279 3.3802 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:34 Heat of formation + Delta-G solvation = -135.216973 kcal Electronic energy + Delta-G solvation = -27226.712337 eV Core-core repulsion = 23462.625364 eV Total energy + Delta-G solvation = -3764.086973 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -38.37378 -37.58365 -36.43606 -35.96251 -35.10553 -33.99635 -33.68727 -30.23873 -29.51143 -29.18869 -26.85763 -25.98674 -25.80210 -21.52355 -21.45911 -21.06814 -19.73942 -19.00610 -17.65163 -17.53560 -16.83674 -16.47379 -15.90822 -15.45283 -14.79019 -14.63488 -14.52556 -14.17922 -13.92680 -13.51858 -13.38148 -13.20916 -12.55400 -12.42018 -12.36646 -12.16964 -11.97636 -11.93844 -11.78063 -11.44608 -11.42151 -11.36228 -11.26644 -11.17676 -11.10055 -10.87595 -10.53213 -10.39614 -10.35897 -10.32627 -9.89782 -9.75579 -9.64244 -9.51520 -9.00855 -7.91074 -7.69200 -7.07038 -4.80152 1.27086 2.24294 2.87723 2.89995 2.91805 2.95654 3.67897 3.74067 4.26106 4.32462 4.54249 4.75838 5.04205 5.09476 5.18909 5.34337 5.38253 5.40769 5.49282 5.57401 5.70523 5.82278 5.96939 5.98335 6.02584 6.09598 6.11640 6.14873 6.19424 6.43100 6.50091 6.66205 6.68095 6.73115 6.77553 6.92592 7.03101 7.34201 7.37342 7.43009 7.61827 7.63414 7.77808 7.98260 8.34129 8.53000 8.64688 9.83935 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015853 B = 0.004262 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.837044 B = 6568.509499 C = 7477.692205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.110 4.110 5 C 0.160 3.840 6 H 0.100 0.900 7 C 0.055 3.945 8 O -0.567 6.567 9 N -1.112 6.112 10 S 2.689 3.311 11 O -0.985 6.985 12 O -0.988 6.988 13 C -0.779 4.779 14 C -0.004 4.004 15 C -0.231 4.231 16 C 0.144 3.856 17 C -0.440 4.440 18 H 0.086 0.914 19 C 0.071 3.929 20 N -0.774 5.774 21 Si 0.917 3.083 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.271 1.271 25 C -0.175 4.175 26 C -0.013 4.013 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.373 0.627 39 H 0.413 0.587 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.287 0.713 43 H 0.123 0.877 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.629 -3.514 -10.653 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.208 4.208 4 C -0.149 4.149 5 C 0.052 3.948 6 H 0.117 0.883 7 C -0.025 4.025 8 O -0.372 6.372 9 N -0.868 5.868 10 S 2.788 3.212 11 O -0.976 6.976 12 O -0.978 6.978 13 C -0.875 4.875 14 C -0.024 4.024 15 C -0.252 4.252 16 C 0.140 3.860 17 C -0.468 4.468 18 H 0.104 0.896 19 C -0.150 4.150 20 N -0.397 5.397 21 Si 0.741 3.259 22 H -0.181 1.181 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.195 4.195 26 C -0.033 4.033 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.219 0.781 39 H 0.246 0.754 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.140 0.860 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.024 -3.871 -9.870 12.194 hybrid contribution -0.398 0.924 0.311 1.053 sum -6.421 -2.947 -9.560 11.887 Atomic orbital electron populations 1.21821 0.95776 1.01082 1.01471 1.21129 0.95064 0.96978 0.98583 1.21932 1.02446 0.95248 1.01220 1.21807 0.93655 1.01293 0.98164 1.20833 0.96847 0.92919 0.84195 0.88271 1.22865 0.96748 0.85797 0.97051 1.86466 1.66556 1.36591 1.47539 1.55695 1.45905 1.41233 1.43961 1.01354 0.72573 0.74611 0.72708 1.93497 1.86185 1.60439 1.57448 1.93471 1.53796 1.87513 1.63014 1.29158 1.31408 1.17059 1.09887 1.20135 0.93587 0.92023 0.96650 1.21044 1.09415 0.95758 0.98985 1.17838 0.84527 0.93289 0.90329 1.19933 1.40442 0.95028 0.91353 0.89603 1.26094 0.92317 0.98607 0.98010 1.69808 1.30611 1.30737 1.08562 0.86098 0.79253 0.80984 0.79587 1.18116 1.19374 1.19581 1.21365 1.05477 0.91476 1.01219 1.20246 0.93775 0.97507 0.91804 0.93147 0.93141 0.92805 0.90469 0.92451 0.91382 0.93622 0.90738 0.91363 0.93140 0.92053 0.78053 0.75412 0.88013 0.88286 0.90151 0.85971 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 37.16 0.34 -1.30 16 2 C -0.10 -1.29 2.86 -90.62 -0.26 -1.55 16 3 C -0.15 -2.18 8.98 37.16 0.33 -1.84 16 4 C -0.11 -1.30 4.00 -26.73 -0.11 -1.41 16 5 C 0.16 2.12 2.45 -67.93 -0.17 1.96 16 6 H 0.10 1.37 5.51 -51.92 -0.29 1.09 16 7 C 0.05 0.65 6.88 37.16 0.26 0.90 16 8 O -0.57 -6.21 12.82 -35.23 -0.45 -6.66 16 9 N -1.11 -16.58 4.75 -4.89 -0.02 -16.61 16 10 S 2.69 51.27 5.65 -107.50 -0.61 50.66 16 11 O -0.99 -21.46 17.26 -57.17 -0.99 -22.45 16 12 O -0.99 -20.41 16.46 -57.17 -0.94 -21.35 16 13 C -0.78 -16.36 5.77 -39.29 -0.23 -16.58 16 14 C 0.00 -0.08 7.38 -39.66 -0.29 -0.37 16 15 C -0.23 -5.17 9.80 -38.87 -0.38 -5.55 16 16 C 0.14 3.50 5.55 -106.82 -0.59 2.90 16 17 C -0.44 -10.54 9.06 -37.74 -0.34 -10.89 16 18 H 0.09 1.95 7.87 -52.48 -0.41 1.54 16 19 C 0.07 1.62 5.25 -17.34 -0.09 1.53 16 20 N -0.77 -18.55 10.87 55.55 0.60 -17.94 16 21 Si 0.92 17.04 29.57 -169.99 -5.03 12.01 16 22 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 23 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 24 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 25 C -0.17 -4.24 8.66 -38.87 -0.34 -4.57 16 26 C -0.01 -0.29 9.49 -39.66 -0.38 -0.67 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.12 7.57 -51.93 -0.39 0.73 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.07 4.87 -51.93 -0.25 0.82 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.88 7.71 -51.93 -0.40 0.48 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.81 7.59 -51.92 -0.39 0.41 16 38 H 0.37 2.48 9.12 45.56 0.42 2.89 16 39 H 0.41 5.56 8.84 -34.48 -0.30 5.26 16 40 H 0.10 1.91 7.59 -52.49 -0.40 1.52 16 41 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 42 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 43 H 0.12 3.05 6.24 -52.49 -0.33 2.72 16 44 H 0.10 2.17 7.60 -52.49 -0.40 1.77 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -29.76 367.85 -9.80 -39.56 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -5.67 Total: 14.69 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: -2.24 Total: -37.45 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.58 Total: -34.55 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -2.38 Total: -50.46 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Atomic # 16 Polarization: 51.27 SS G_CDS: -0.61 Total: 50.66 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.76 -9.80 -39.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.662 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds