Wall clock time and date at job start Tue Mar 31 2020 14:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47078 * 2 1 4 4 C 1.53001 * 109.47012 * 239.99931 * 2 1 3 5 5 C 1.52999 * 109.47242 * 186.32180 * 4 2 1 6 6 H 1.09008 * 109.47089 * 304.56740 * 5 4 2 7 7 C 1.52997 * 109.47190 * 184.56307 * 5 4 2 8 8 O 1.42895 * 109.47485 * 304.99784 * 7 5 4 9 9 N 1.46505 * 109.47195 * 64.56264 * 5 4 2 10 10 S 1.65601 * 119.99948 * 215.00570 * 9 5 4 11 11 O 1.42101 * 106.39792 * 178.54014 * 10 9 5 12 12 O 1.42102 * 106.39912 * 311.45703 * 10 9 5 13 13 C 1.76191 * 107.21975 * 64.99767 * 10 9 5 14 14 C 1.38635 * 119.74800 * 269.72520 * 13 10 9 15 15 C 1.37629 * 120.24825 * 179.72321 * 14 13 10 16 16 C 1.40721 * 119.74042 * 0.57078 * 15 14 13 17 17 C 1.41396 * 120.24068 * 179.67887 * 16 15 14 18 18 H 1.08004 * 119.99842 * 28.83758 * 17 16 15 19 19 C 1.39942 * 120.00136 * 208.82958 * 17 16 15 20 20 N 1.30828 * 119.99508 * 11.14944 * 19 17 16 21 21 Si 1.86795 * 120.00310 * 191.14648 * 19 17 16 22 22 H 1.48503 * 109.47182 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47129 * 120.00076 * 21 19 17 24 24 H 1.48498 * 109.47530 * 240.00220 * 21 19 17 25 25 C 1.40710 * 119.51424 * 359.70762 * 16 15 14 26 26 C 1.37622 * 119.74419 * 359.97438 * 25 16 15 27 27 H 1.09001 * 109.47262 * 55.17406 * 1 2 3 28 28 H 1.09001 * 109.47256 * 175.17090 * 1 2 3 29 29 H 1.08998 * 109.47050 * 295.16786 * 1 2 3 30 30 H 1.08997 * 109.46983 * 120.00519 * 2 1 3 31 31 H 1.08996 * 109.47028 * 60.00041 * 3 2 1 32 32 H 1.08996 * 109.47145 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46940 * 300.00121 * 3 2 1 34 34 H 1.08997 * 109.47539 * 306.32311 * 4 2 1 35 35 H 1.09000 * 109.47223 * 66.32441 * 4 2 1 36 36 H 1.08995 * 109.47068 * 65.00457 * 7 5 4 37 37 H 1.09011 * 109.46836 * 184.99679 * 7 5 4 38 38 H 0.96695 * 114.00439 * 180.02562 * 8 7 5 39 39 H 0.96999 * 119.99555 * 35.00132 * 9 5 4 40 40 H 1.07993 * 119.87974 * 359.97438 * 14 13 10 41 41 H 1.07995 * 120.12753 * 180.27950 * 15 14 13 42 42 H 0.97004 * 119.99218 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.13153 * 179.97438 * 25 16 15 44 44 H 1.08002 * 119.87362 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5617 -0.8603 -1.1724 6 1 4.0099 0.1235 -1.0325 7 6 4.0835 -1.4786 -2.4710 8 8 3.4101 -2.7151 -2.7142 9 7 3.9168 -1.7237 -0.0433 10 16 5.2914 -1.4218 0.8295 11 8 5.3346 -2.3989 1.8604 12 8 6.3364 -1.2435 -0.1167 13 6 5.0717 0.1338 1.6272 14 6 5.4735 1.2970 0.9888 15 6 5.3016 2.5181 1.6000 16 6 4.7264 2.5819 2.8827 17 6 4.5510 3.8302 3.5232 18 1 4.4029 4.7233 2.9342 19 6 4.5691 3.9085 4.9203 20 7 4.9616 2.8805 5.6280 21 14 4.0329 5.4806 5.7748 22 1 3.6372 6.4870 4.7570 23 1 2.8767 5.1927 6.6611 24 1 5.1579 6.0118 6.5856 25 6 4.3276 1.3943 3.5234 26 6 4.5031 0.1849 2.8906 27 1 -0.3634 0.5869 -0.8436 28 1 -0.3634 -1.0240 -0.0865 29 1 -0.3633 0.4370 0.9301 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.5872 -1.7110 -1.3077 35 1 1.7720 -0.1463 -2.1356 36 1 3.8980 -0.7947 -3.2992 37 1 5.1549 -1.6596 -2.3823 38 1 3.6917 -3.1640 -3.5230 39 1 3.3467 -2.4720 0.1930 40 1 5.9195 1.2451 0.0067 41 1 5.6112 3.4233 1.0991 42 1 4.9745 2.9349 6.5964 43 1 3.8854 1.4316 4.5080 44 1 4.1974 -0.7279 3.3802 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:33 Heat of formation + Delta-G solvation = -156.437421 kcal Electronic energy + Delta-G solvation = -27227.632525 eV Core-core repulsion = 23462.625364 eV Total energy + Delta-G solvation = -3765.007161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.52981 -39.21459 -38.07891 -36.87992 -36.75684 -35.73719 -34.81266 -32.01677 -31.28736 -30.28353 -27.91165 -27.57894 -26.91546 -23.24714 -23.00791 -22.36446 -20.79006 -20.44680 -19.38718 -18.85297 -18.18962 -17.90102 -17.24683 -17.02086 -16.08769 -15.86032 -15.77105 -15.55306 -15.19176 -14.99475 -14.87328 -14.47047 -14.08244 -13.93152 -13.76158 -13.57047 -13.35420 -13.10191 -13.04555 -12.98643 -12.92401 -12.88862 -12.82639 -12.57381 -12.41016 -12.29603 -11.96747 -11.63767 -11.51439 -11.41993 -11.37466 -11.29928 -11.18680 -10.74600 -10.26712 -9.69547 -9.48059 -8.78975 -6.62488 -0.28677 0.50834 1.09121 1.36654 1.41443 1.52432 2.12644 2.27750 2.59043 2.95244 3.48345 3.55535 3.61491 3.75026 4.06634 4.13081 4.31874 4.34354 4.37424 4.41806 4.49396 4.59936 4.77751 4.85018 4.90667 4.91901 4.97161 4.99280 5.10615 5.12174 5.16120 5.18909 5.26499 5.37575 5.47197 5.57121 5.62011 5.62639 5.65067 5.80037 5.97605 6.20082 6.23822 6.54567 6.73607 6.84729 7.00694 8.15286 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015853 B = 0.004262 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.837044 B = 6568.509499 C = 7477.692205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 C -0.150 4.150 4 C -0.099 4.099 5 C 0.148 3.852 6 H 0.093 0.907 7 C 0.059 3.941 8 O -0.577 6.577 9 N -1.097 6.097 10 S 2.716 3.284 11 O -1.012 7.012 12 O -0.999 6.999 13 C -0.781 4.781 14 C 0.000 4.000 15 C -0.243 4.243 16 C 0.121 3.879 17 C -0.471 4.471 18 H 0.090 0.910 19 C 0.032 3.968 20 N -0.811 5.811 21 Si 0.990 3.010 22 H -0.252 1.252 23 H -0.264 1.264 24 H -0.266 1.266 25 C -0.196 4.196 26 C -0.018 4.018 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.393 0.607 39 H 0.422 0.578 40 H 0.126 0.874 41 H 0.111 0.889 42 H 0.294 0.706 43 H 0.106 0.894 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.536 -3.481 -12.634 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C -0.207 4.207 4 C -0.138 4.138 5 C 0.041 3.959 6 H 0.111 0.889 7 C -0.021 4.021 8 O -0.385 6.385 9 N -0.857 5.857 10 S 2.812 3.188 11 O -1.003 7.003 12 O -0.989 6.989 13 C -0.874 4.874 14 C -0.020 4.020 15 C -0.263 4.263 16 C 0.117 3.883 17 C -0.498 4.498 18 H 0.109 0.891 19 C -0.185 4.185 20 N -0.435 5.435 21 Si 0.810 3.190 22 H -0.175 1.175 23 H -0.188 1.188 24 H -0.191 1.191 25 C -0.216 4.216 26 C -0.038 4.038 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.243 0.757 39 H 0.258 0.742 40 H 0.144 0.856 41 H 0.129 0.871 42 H 0.105 0.895 43 H 0.124 0.876 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.927 -3.837 -11.861 14.262 hybrid contribution -0.121 0.776 0.793 1.116 sum -7.047 -3.061 -11.068 13.474 Atomic orbital electron populations 1.21784 0.94374 1.02031 1.01615 1.21113 0.96282 0.95885 0.98552 1.21907 1.01381 0.96344 1.01051 1.21736 0.92251 1.01710 0.98096 1.21133 0.98090 0.92505 0.84205 0.88892 1.22740 0.95673 0.86782 0.96887 1.86412 1.66509 1.36418 1.49156 1.55295 1.44953 1.41666 1.43826 1.00520 0.72968 0.73177 0.72102 1.93458 1.86952 1.60898 1.58966 1.93455 1.55074 1.87396 1.62980 1.29545 1.29846 1.18564 1.09466 1.20386 0.92743 0.91434 0.97394 1.21240 1.09493 0.96946 0.98608 1.18135 0.85158 0.93605 0.91381 1.20204 1.42034 0.95156 0.92442 0.89147 1.26951 0.91588 1.01784 0.98194 1.69864 1.31609 1.32815 1.09205 0.85028 0.78840 0.76823 0.78354 1.17522 1.18834 1.19064 1.21320 1.06845 0.92454 1.01029 1.20369 0.93779 0.97158 0.92509 0.91739 0.91987 0.93769 0.92594 0.94824 0.92960 0.91550 0.90105 0.89204 0.90294 0.93631 0.75748 0.74247 0.85640 0.87082 0.89476 0.87605 0.87485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.19 71.98 0.66 -2.30 16 2 C -0.10 -2.47 2.86 -10.79 -0.03 -2.50 16 3 C -0.15 -4.21 8.98 71.98 0.65 -3.57 16 4 C -0.10 -2.06 4.00 30.59 0.12 -1.94 16 5 C 0.15 3.58 2.45 44.99 0.11 3.69 16 6 H 0.09 2.40 5.51 -2.38 -0.01 2.38 16 7 C 0.06 1.21 6.88 71.98 0.50 1.70 16 8 O -0.58 -10.71 12.82 -148.98 -1.91 -12.62 16 9 N -1.10 -31.13 4.75 -169.38 -0.80 -31.94 16 10 S 2.72 101.56 5.65 -56.49 -0.32 101.24 16 11 O -1.01 -43.76 17.26 -128.00 -2.21 -45.97 16 12 O -1.00 -39.96 16.46 -128.00 -2.11 -42.07 16 13 C -0.78 -32.89 5.77 22.46 0.13 -32.76 16 14 C 0.00 0.01 7.38 22.22 0.16 0.17 16 15 C -0.24 -10.97 9.80 22.73 0.22 -10.75 16 16 C 0.12 6.06 5.55 -21.29 -0.12 5.94 16 17 C -0.47 -23.22 9.06 23.46 0.21 -23.00 16 18 H 0.09 4.20 7.87 -2.91 -0.02 4.18 16 19 C 0.03 1.51 5.25 85.26 0.45 1.95 16 20 N -0.81 -40.14 10.87 21.83 0.24 -39.90 16 21 Si 0.99 35.13 29.57 68.60 2.03 37.16 16 22 H -0.25 -8.61 7.11 99.48 0.71 -7.91 16 23 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 24 H -0.27 -9.16 7.11 99.48 0.71 -8.46 16 25 C -0.20 -9.92 8.66 22.73 0.20 -9.72 16 26 C -0.02 -0.84 9.49 22.22 0.21 -0.62 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.61 7.57 -2.39 -0.02 1.59 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.62 4.87 -2.39 -0.01 1.61 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.63 7.71 -2.39 -0.02 1.61 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.09 7.59 -2.38 -0.02 1.07 16 38 H 0.39 3.87 9.12 -74.06 -0.68 3.20 16 39 H 0.42 10.69 8.84 -96.74 -0.85 9.84 16 40 H 0.13 4.55 7.59 -2.91 -0.02 4.53 16 41 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 42 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 43 H 0.11 5.61 6.24 -2.91 -0.02 5.59 16 44 H 0.11 4.72 7.60 -2.91 -0.02 4.70 16 Total: -1.00 -64.62 367.85 -2.12 -66.73 By element: Atomic # 1 Polarization: 41.55 SS G_CDS: -0.50 Total: 41.05 kcal Atomic # 6 Polarization: -77.16 SS G_CDS: 3.47 Total: -73.69 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -0.57 Total: -71.84 kcal Atomic # 8 Polarization: -94.43 SS G_CDS: -6.23 Total: -100.66 kcal Atomic # 14 Polarization: 35.13 SS G_CDS: 2.03 Total: 37.16 kcal Atomic # 16 Polarization: 101.56 SS G_CDS: -0.32 Total: 101.24 kcal Total: -64.62 -2.12 -66.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.702 kcal (2) G-P(sol) polarization free energy of solvation -64.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds