Wall clock time and date at job start Tue Mar 31 2020 15:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46959 * 2 1 4 4 C 1.53008 * 109.46959 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47100 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99878 * 84.99988 * 5 4 3 7 7 C 1.53004 * 109.47129 * 85.00166 * 6 5 4 8 8 O 1.42897 * 109.47290 * 65.00037 * 7 6 5 9 9 S 1.65593 * 120.00217 * 265.27420 * 5 4 3 10 10 O 1.42105 * 106.40109 * 23.26407 * 9 5 4 11 11 O 1.42098 * 106.40622 * 156.18583 * 9 5 4 12 12 C 1.76200 * 107.22045 * 269.72795 * 9 5 4 13 13 C 1.38636 * 119.74615 * 269.72507 * 12 9 5 14 14 C 1.37618 * 120.24405 * 179.71548 * 13 12 9 15 15 C 1.40712 * 119.74606 * 0.57702 * 14 13 12 16 16 C 1.41404 * 120.24646 * 179.67820 * 15 14 13 17 17 H 1.07997 * 119.99999 * 155.30936 * 16 15 14 18 18 C 1.39944 * 119.99802 * 335.31045 * 16 15 14 19 19 N 1.30828 * 119.99789 * 342.23196 * 18 16 15 20 20 Si 1.86800 * 120.00254 * 162.23127 * 18 16 15 21 21 H 1.48502 * 109.46965 * 94.66191 * 20 18 16 22 22 H 1.48494 * 109.47495 * 214.66629 * 20 18 16 23 23 H 1.48509 * 109.46878 * 334.66458 * 20 18 16 24 24 C 1.40715 * 119.51125 * 359.69806 * 15 14 13 25 25 C 1.37617 * 119.74711 * 0.02562 * 24 15 14 26 26 H 1.08996 * 109.46730 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46692 * 300.00393 * 1 2 3 28 28 H 1.09003 * 109.46766 * 60.00121 * 1 2 3 29 29 H 1.08990 * 109.46945 * 239.99762 * 2 1 3 30 30 H 1.09003 * 109.46766 * 119.99879 * 2 1 3 31 31 H 1.08998 * 109.47739 * 60.00249 * 3 2 1 32 32 H 1.09003 * 109.47283 * 299.99563 * 3 2 1 33 33 H 1.08998 * 109.46692 * 59.99607 * 4 3 2 34 34 H 1.09003 * 109.46766 * 299.99879 * 4 3 2 35 35 H 1.09003 * 109.47256 * 204.99772 * 6 5 4 36 36 H 1.09002 * 109.47641 * 324.99706 * 6 5 4 37 37 H 1.09000 * 109.46840 * 185.00383 * 7 6 5 38 38 H 1.09000 * 109.46834 * 304.99712 * 7 6 5 39 39 H 0.96696 * 114.00127 * 180.02562 * 8 7 6 40 40 H 1.08001 * 119.87694 * 359.97438 * 13 12 9 41 41 H 1.08006 * 120.12587 * 180.27499 * 14 13 12 42 42 H 0.97004 * 119.99830 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.12550 * 179.97438 * 24 15 14 44 44 H 1.07990 * 119.87598 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1978 3.5519 1.2636 7 6 5.5545 3.2275 1.8922 8 8 6.5992 3.7235 1.0528 9 16 4.4464 3.5641 -1.4294 10 8 3.7219 2.8822 -2.4441 11 8 4.3346 4.9621 -1.2006 12 6 6.1519 3.2450 -1.7361 13 6 7.1125 4.1250 -1.2618 14 6 8.4478 3.8827 -1.4904 15 6 8.8358 2.7431 -2.2189 16 6 10.2044 2.4874 -2.4658 17 1 10.5404 1.4778 -2.6509 18 6 11.1236 3.5427 -2.4702 19 7 10.7037 4.7754 -2.5955 20 14 12.9501 3.1912 -2.2972 21 1 13.5677 3.1064 -3.6450 22 1 13.5937 4.2845 -1.5255 23 1 13.1408 1.9029 -1.5834 24 6 7.8518 1.8599 -2.7003 25 6 6.5227 2.1191 -2.4550 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9284 -0.8891 34 1 3.9330 0.9288 0.8909 35 1 4.1318 4.6234 1.0746 36 1 3.4010 3.2534 1.9448 37 1 5.6222 3.6980 2.8731 38 1 5.6563 2.1476 1.9994 39 1 7.4892 3.5526 1.3900 40 1 6.8120 5.0017 -0.7074 41 1 9.1947 4.5672 -1.1162 42 1 11.3408 5.5068 -2.5983 43 1 8.1384 0.9824 -3.2610 44 1 5.7658 1.4425 -2.8231 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:51 Heat of formation + Delta-G solvation = -122.157284 kcal Electronic energy + Delta-G solvation = -26940.556073 eV Core-core repulsion = 23177.035410 eV Total energy + Delta-G solvation = -3763.520663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -37.68140 -37.37025 -36.59620 -35.80586 -34.99383 -33.99479 -33.88381 -30.10245 -29.84235 -29.29734 -27.49904 -25.66422 -23.64019 -22.08503 -21.29063 -21.00619 -20.86125 -18.25386 -17.50704 -17.37652 -17.04267 -16.35931 -15.77328 -15.39531 -15.22715 -14.66159 -14.21564 -14.07589 -13.89489 -13.39119 -13.20620 -13.12228 -12.99860 -12.69599 -12.32571 -12.08678 -12.05970 -11.68364 -11.59935 -11.58170 -11.38235 -11.34665 -11.17450 -11.12508 -11.03481 -10.98417 -10.73973 -10.72805 -10.45670 -10.33159 -9.70981 -9.60097 -9.40310 -9.33558 -8.62049 -7.76036 -7.46697 -7.00983 -4.66932 1.35130 2.43189 2.93298 2.94064 3.00415 3.08966 3.65865 3.74048 4.34310 4.51949 4.74376 4.85771 4.89645 5.07281 5.09955 5.22145 5.35257 5.40041 5.48003 5.54586 5.62130 5.63392 5.67383 5.77328 5.79889 5.90306 5.97041 6.09646 6.18241 6.19297 6.34758 6.37953 6.44156 6.81355 6.86816 6.93965 7.16854 7.21611 7.51002 7.58379 7.83050 7.91447 8.00791 8.12164 8.48246 8.66244 8.81337 9.90236 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020461 B = 0.003539 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.119999 B = 7908.923984 C = 8132.827443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.142 4.142 4 C 0.129 3.871 5 N -0.998 5.998 6 C 0.120 3.880 7 C 0.050 3.950 8 O -0.547 6.547 9 S 2.692 3.308 10 O -0.988 6.988 11 O -0.983 6.983 12 C -0.768 4.768 13 C 0.036 3.964 14 C -0.198 4.198 15 C 0.144 3.856 16 C -0.445 4.445 17 H 0.083 0.917 18 C 0.075 3.925 19 N -0.769 5.769 20 Si 0.912 3.088 21 H -0.268 1.268 22 H -0.273 1.273 23 H -0.258 1.258 24 C -0.242 4.242 25 C -0.004 4.004 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.377 0.623 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.286 0.714 43 H 0.095 0.905 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 -5.407 10.006 14.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.181 4.181 4 C 0.003 3.997 5 N -0.832 5.832 6 C -0.006 4.006 7 C -0.030 4.030 8 O -0.353 6.353 9 S 2.793 3.207 10 O -0.979 6.979 11 O -0.974 6.974 12 C -0.865 4.865 13 C 0.015 3.985 14 C -0.219 4.219 15 C 0.140 3.860 16 C -0.473 4.473 17 H 0.101 0.899 18 C -0.147 4.147 19 N -0.392 5.392 20 Si 0.736 3.264 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.182 1.182 24 C -0.263 4.263 25 C -0.024 4.024 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.225 0.775 40 H 0.126 0.874 41 H 0.136 0.864 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.234 -4.466 9.138 14.428 hybrid contribution 2.046 -0.638 0.605 2.227 sum -8.187 -5.104 9.743 13.712 Atomic orbital electron populations 1.21765 0.95978 1.01340 1.01813 1.21455 0.95816 0.96648 1.02141 1.22097 0.96166 0.97085 1.02740 1.21167 0.93320 0.82260 1.02988 1.57712 1.80506 1.22818 1.22175 1.21319 0.95270 0.98104 0.85860 1.22629 0.89541 0.97780 0.93036 1.86864 1.17281 1.81933 1.49266 1.01303 0.75155 0.72639 0.71639 1.93465 1.72794 1.75781 1.55842 1.93451 1.87919 1.30809 1.85222 1.29072 1.20646 1.10418 1.26333 1.20100 0.92618 0.94521 0.91234 1.21258 0.94379 1.01213 1.05007 1.17810 0.92468 0.90201 0.85506 1.19849 0.92070 0.95052 1.40331 0.89899 1.26068 1.02279 0.94425 0.91909 1.69849 1.37891 1.00325 1.31138 0.86228 0.80994 0.79720 0.79489 1.19279 1.19746 1.18197 1.20974 0.92527 1.03438 1.09341 1.20131 0.95886 0.93320 0.93088 0.92930 0.92961 0.92620 0.91598 0.92085 0.91912 0.91096 0.90138 0.91079 0.88588 0.89719 0.93650 0.93801 0.77505 0.87448 0.86404 0.90244 0.88675 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.19 5.93 -26.73 -0.16 -1.35 16 3 C -0.14 -1.66 5.54 -26.73 -0.15 -1.80 16 4 C 0.13 1.68 5.34 -4.04 -0.02 1.66 16 5 N -1.00 -15.41 2.73 -114.37 -0.31 -15.72 16 6 C 0.12 1.56 6.07 -4.04 -0.02 1.54 16 7 C 0.05 0.61 7.39 37.16 0.27 0.88 16 8 O -0.55 -8.46 8.44 -35.23 -0.30 -8.75 16 9 S 2.69 54.68 5.52 -107.50 -0.59 54.09 16 10 O -0.99 -21.62 16.23 -57.17 -0.93 -22.55 16 11 O -0.98 -22.19 15.80 -57.17 -0.90 -23.09 16 12 C -0.77 -17.28 5.47 -39.29 -0.21 -17.50 16 13 C 0.04 0.83 6.37 -39.66 -0.25 0.57 16 14 C -0.20 -4.90 8.70 -38.87 -0.34 -5.24 16 15 C 0.14 3.65 5.57 -106.82 -0.60 3.06 16 16 C -0.45 -11.06 9.05 -37.74 -0.34 -11.40 16 17 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 18 C 0.07 1.75 5.14 -17.34 -0.09 1.66 16 19 N -0.77 -18.78 10.97 55.55 0.61 -18.17 16 20 Si 0.91 17.28 29.59 -169.99 -5.03 12.25 16 21 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 22 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 23 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 24 C -0.24 -5.83 9.80 -38.87 -0.38 -6.21 16 25 C 0.00 -0.09 9.49 -39.66 -0.38 -0.47 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.14 7.61 -51.93 -0.40 0.74 16 34 H 0.07 0.76 8.05 -51.93 -0.42 0.35 16 35 H 0.10 1.39 6.91 -51.93 -0.36 1.03 16 36 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 39 H 0.38 4.89 9.12 45.56 0.42 5.31 16 40 H 0.11 2.43 6.73 -52.49 -0.35 2.08 16 41 H 0.12 2.97 6.18 -52.48 -0.32 2.64 16 42 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 43 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 44 H 0.10 2.03 7.60 -52.49 -0.40 1.64 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -30.77 368.15 -10.23 -41.01 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -6.03 Total: 10.96 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: -2.30 Total: -35.56 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.30 Total: -33.90 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -2.13 Total: -54.39 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Atomic # 16 Polarization: 54.68 SS G_CDS: -0.59 Total: 54.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.77 -10.23 -41.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.152 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds