Wall clock time and date at job start Tue Mar 31 2020 15:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46959 * 2 1 4 4 C 1.53008 * 109.46959 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47100 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99878 * 84.99988 * 5 4 3 7 7 C 1.53004 * 109.47129 * 85.00166 * 6 5 4 8 8 O 1.42897 * 109.47290 * 65.00037 * 7 6 5 9 9 S 1.65593 * 120.00217 * 265.27420 * 5 4 3 10 10 O 1.42105 * 106.40109 * 23.26407 * 9 5 4 11 11 O 1.42098 * 106.40622 * 156.18583 * 9 5 4 12 12 C 1.76200 * 107.22045 * 269.72795 * 9 5 4 13 13 C 1.38636 * 119.74615 * 269.72507 * 12 9 5 14 14 C 1.37618 * 120.24405 * 179.71548 * 13 12 9 15 15 C 1.40712 * 119.74606 * 0.57702 * 14 13 12 16 16 C 1.41404 * 120.24646 * 179.67820 * 15 14 13 17 17 H 1.07997 * 119.99999 * 155.30936 * 16 15 14 18 18 C 1.39944 * 119.99802 * 335.31045 * 16 15 14 19 19 N 1.30828 * 119.99789 * 342.23196 * 18 16 15 20 20 Si 1.86800 * 120.00254 * 162.23127 * 18 16 15 21 21 H 1.48502 * 109.46965 * 94.66191 * 20 18 16 22 22 H 1.48494 * 109.47495 * 214.66629 * 20 18 16 23 23 H 1.48509 * 109.46878 * 334.66458 * 20 18 16 24 24 C 1.40715 * 119.51125 * 359.69806 * 15 14 13 25 25 C 1.37617 * 119.74711 * 0.02562 * 24 15 14 26 26 H 1.08996 * 109.46730 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46692 * 300.00393 * 1 2 3 28 28 H 1.09003 * 109.46766 * 60.00121 * 1 2 3 29 29 H 1.08990 * 109.46945 * 239.99762 * 2 1 3 30 30 H 1.09003 * 109.46766 * 119.99879 * 2 1 3 31 31 H 1.08998 * 109.47739 * 60.00249 * 3 2 1 32 32 H 1.09003 * 109.47283 * 299.99563 * 3 2 1 33 33 H 1.08998 * 109.46692 * 59.99607 * 4 3 2 34 34 H 1.09003 * 109.46766 * 299.99879 * 4 3 2 35 35 H 1.09003 * 109.47256 * 204.99772 * 6 5 4 36 36 H 1.09002 * 109.47641 * 324.99706 * 6 5 4 37 37 H 1.09000 * 109.46840 * 185.00383 * 7 6 5 38 38 H 1.09000 * 109.46834 * 304.99712 * 7 6 5 39 39 H 0.96696 * 114.00127 * 180.02562 * 8 7 6 40 40 H 1.08001 * 119.87694 * 359.97438 * 13 12 9 41 41 H 1.08006 * 120.12587 * 180.27499 * 14 13 12 42 42 H 0.97004 * 119.99830 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.12550 * 179.97438 * 24 15 14 44 44 H 1.07990 * 119.87598 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1978 3.5519 1.2636 7 6 5.5545 3.2275 1.8922 8 8 6.5992 3.7235 1.0528 9 16 4.4464 3.5641 -1.4294 10 8 3.7219 2.8822 -2.4441 11 8 4.3346 4.9621 -1.2006 12 6 6.1519 3.2450 -1.7361 13 6 7.1125 4.1250 -1.2618 14 6 8.4478 3.8827 -1.4904 15 6 8.8358 2.7431 -2.2189 16 6 10.2044 2.4874 -2.4658 17 1 10.5404 1.4778 -2.6509 18 6 11.1236 3.5427 -2.4702 19 7 10.7037 4.7754 -2.5955 20 14 12.9501 3.1912 -2.2972 21 1 13.5677 3.1064 -3.6450 22 1 13.5937 4.2845 -1.5255 23 1 13.1408 1.9029 -1.5834 24 6 7.8518 1.8599 -2.7003 25 6 6.5227 2.1191 -2.4550 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9284 -0.8891 34 1 3.9330 0.9288 0.8909 35 1 4.1318 4.6234 1.0746 36 1 3.4010 3.2534 1.9448 37 1 5.6222 3.6980 2.8731 38 1 5.6563 2.1476 1.9994 39 1 7.4892 3.5526 1.3900 40 1 6.8120 5.0017 -0.7074 41 1 9.1947 4.5672 -1.1162 42 1 11.3408 5.5068 -2.5983 43 1 8.1384 0.9824 -3.2610 44 1 5.7658 1.4425 -2.8231 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:50 Heat of formation + Delta-G solvation = -142.537782 kcal Electronic energy + Delta-G solvation = -26941.439838 eV Core-core repulsion = 23177.035410 eV Total energy + Delta-G solvation = -3764.404427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.29077 -38.68534 -38.21135 -36.95783 -36.69840 -35.69449 -34.94789 -31.93579 -31.17170 -30.78919 -28.51927 -27.49746 -24.59363 -23.33676 -23.03368 -22.57991 -21.88693 -19.72265 -19.33273 -18.71651 -18.38084 -17.93954 -17.14156 -17.01935 -16.13216 -15.93703 -15.77528 -15.52519 -15.07163 -14.89908 -14.76652 -14.33933 -14.08310 -14.03180 -13.79646 -13.55313 -13.42889 -13.30800 -13.04082 -12.93845 -12.89451 -12.79420 -12.64057 -12.52731 -12.47916 -12.05358 -11.96660 -11.92800 -11.74853 -11.43182 -11.35811 -11.17927 -11.08468 -10.70286 -9.88437 -9.58995 -9.32238 -8.77835 -6.55262 -0.23584 0.64250 1.20586 1.37848 1.44631 1.54097 2.14807 2.23250 2.61869 3.00430 3.49919 3.59785 3.76060 3.91101 4.05462 4.20563 4.31449 4.37466 4.38811 4.41353 4.53815 4.59091 4.67521 4.74878 4.80036 4.88070 4.99453 5.01382 5.02502 5.04504 5.14802 5.24497 5.25824 5.33554 5.37341 5.47433 5.52688 5.65500 5.71485 5.82946 5.97027 6.04995 6.27362 6.62390 6.79948 6.94306 7.01681 8.16963 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020461 B = 0.003539 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.119999 B = 7908.923984 C = 8132.827443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.139 4.139 4 C 0.121 3.879 5 N -0.989 5.989 6 C 0.112 3.888 7 C 0.047 3.953 8 O -0.579 6.579 9 S 2.713 3.287 10 O -1.007 7.007 11 O -1.008 7.008 12 C -0.778 4.778 13 C 0.043 3.957 14 C -0.213 4.213 15 C 0.118 3.882 16 C -0.476 4.476 17 H 0.086 0.914 18 C 0.037 3.963 19 N -0.804 5.804 20 Si 0.989 3.011 21 H -0.263 1.263 22 H -0.263 1.263 23 H -0.254 1.254 24 C -0.261 4.261 25 C -0.007 4.007 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.384 0.616 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.295 0.705 43 H 0.103 0.897 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.563 -6.545 11.957 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.178 4.178 4 C -0.004 4.004 5 N -0.826 5.826 6 C -0.013 4.013 7 C -0.032 4.032 8 O -0.387 6.387 9 S 2.811 3.189 10 O -0.997 6.997 11 O -0.999 6.999 12 C -0.872 4.872 13 C 0.023 3.977 14 C -0.233 4.233 15 C 0.115 3.885 16 C -0.503 4.503 17 H 0.104 0.896 18 C -0.182 4.182 19 N -0.427 5.427 20 Si 0.808 3.192 21 H -0.188 1.188 22 H -0.188 1.188 23 H -0.177 1.177 24 C -0.281 4.281 25 C -0.027 4.027 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.147 0.853 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.233 0.767 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.106 0.894 43 H 0.122 0.878 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.629 -5.609 11.077 16.345 hybrid contribution 1.998 -0.288 0.070 2.020 sum -8.631 -5.897 11.147 15.282 Atomic orbital electron populations 1.21769 0.95276 1.02110 1.01769 1.21460 0.96434 0.95312 1.02717 1.22080 0.94967 0.98401 1.02381 1.21457 0.94350 0.80690 1.03904 1.57330 1.79885 1.23949 1.21455 1.21683 0.97415 0.97009 0.85206 1.22809 0.87977 0.98694 0.93706 1.86787 1.18426 1.82513 1.50938 1.00593 0.73876 0.72060 0.72400 1.93435 1.72556 1.75976 1.57744 1.93415 1.87831 1.32745 1.85906 1.29514 1.22273 1.09745 1.25633 1.20096 0.92266 0.94572 0.90792 1.21200 0.94800 1.01409 1.05936 1.18130 0.93385 0.90837 0.86173 1.20118 0.92567 0.95794 1.41850 0.89614 1.26941 1.06804 0.93740 0.90698 1.69892 1.39884 1.01392 1.31563 0.85091 0.74752 0.79754 0.79567 1.18789 1.18772 1.17732 1.21172 0.93015 1.03932 1.10016 1.20358 0.95879 0.93720 0.92750 0.91791 0.92017 0.93697 0.92466 0.90102 0.90024 0.93728 0.91606 0.87801 0.90337 0.85333 0.90636 0.92646 0.76716 0.87315 0.87522 0.89380 0.87839 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.61 16 2 C -0.12 -2.06 5.93 30.60 0.18 -1.88 16 3 C -0.14 -2.93 5.54 30.60 0.17 -2.76 16 4 C 0.12 2.87 5.34 86.38 0.46 3.33 16 5 N -0.99 -28.83 2.73 -515.76 -1.41 -30.24 16 6 C 0.11 2.60 6.07 86.38 0.52 3.13 16 7 C 0.05 1.02 7.39 71.98 0.53 1.55 16 8 O -0.58 -17.56 8.44 -148.98 -1.26 -18.81 16 9 S 2.71 109.71 5.52 -56.49 -0.31 109.40 16 10 O -1.01 -44.04 16.23 -128.00 -2.08 -46.12 16 11 O -1.01 -45.69 15.80 -128.00 -2.02 -47.72 16 12 C -0.78 -35.37 5.47 22.46 0.12 -35.24 16 13 C 0.04 2.04 6.37 22.22 0.14 2.18 16 14 C -0.21 -10.90 8.70 22.73 0.20 -10.71 16 15 C 0.12 6.19 5.57 -21.29 -0.12 6.07 16 16 C -0.48 -24.20 9.05 23.46 0.21 -23.98 16 17 H 0.09 4.14 7.91 -2.91 -0.02 4.12 16 18 C 0.04 1.73 5.14 85.26 0.44 2.17 16 19 N -0.80 -40.06 10.97 21.83 0.24 -39.82 16 20 Si 0.99 35.26 29.59 68.60 2.03 37.29 16 21 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 22 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 23 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 24 C -0.26 -12.84 9.80 22.73 0.22 -12.62 16 25 C -0.01 -0.33 9.49 22.22 0.21 -0.12 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.77 7.61 -2.39 -0.02 1.76 16 34 H 0.10 1.82 8.05 -2.39 -0.02 1.80 16 35 H 0.08 2.16 6.91 -2.39 -0.02 2.14 16 36 H 0.13 1.90 8.11 -2.39 -0.02 1.89 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.09 8.08 -2.39 -0.02 1.07 16 39 H 0.38 9.99 9.12 -74.06 -0.68 9.31 16 40 H 0.11 5.06 6.73 -2.91 -0.02 5.04 16 41 H 0.11 5.60 6.18 -2.91 -0.02 5.59 16 42 H 0.30 13.14 8.30 -92.71 -0.77 12.38 16 43 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 44 H 0.11 4.78 7.60 -2.92 -0.02 4.76 16 Total: -1.00 -67.98 368.15 -0.47 -68.46 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: 0.32 Total: 38.05 kcal Atomic # 6 Polarization: -74.50 SS G_CDS: 4.01 Total: -70.49 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -1.17 Total: -70.06 kcal Atomic # 8 Polarization: -107.29 SS G_CDS: -5.36 Total: -112.65 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 2.03 Total: 37.29 kcal Atomic # 16 Polarization: 109.71 SS G_CDS: -0.31 Total: 109.40 kcal Total: -67.98 -0.47 -68.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.080 kcal (2) G-P(sol) polarization free energy of solvation -67.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds