Wall clock time and date at job start Tue Mar 31 2020 15:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47017 * 2 1 4 4 C 1.53004 * 109.47017 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47086 * 180.02562 * 4 3 2 6 6 C 1.42903 * 113.99743 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46767 * 180.02562 * 6 5 4 8 8 N 1.46494 * 109.47693 * 64.99907 * 7 6 5 9 9 S 1.65597 * 120.00241 * 164.72209 * 8 7 6 10 10 O 1.42103 * 106.40620 * 178.54272 * 9 8 7 11 11 O 1.42100 * 106.40630 * 311.46546 * 9 8 7 12 12 C 1.76208 * 107.21734 * 65.00320 * 9 8 7 13 13 C 1.38632 * 119.74525 * 269.73112 * 12 9 8 14 14 C 1.37628 * 120.24207 * 179.72238 * 13 12 9 15 15 C 1.40708 * 119.74460 * 0.56531 * 14 13 12 16 16 C 1.41395 * 120.24350 * 179.68162 * 15 14 13 17 17 H 1.07999 * 120.00421 * 204.40366 * 16 15 14 18 18 C 1.39948 * 120.00045 * 24.41232 * 16 15 14 19 19 N 1.30828 * 119.99938 * 17.83864 * 18 16 15 20 20 Si 1.86804 * 120.00206 * 197.84763 * 18 16 15 21 21 H 1.48496 * 109.47170 * 89.99474 * 20 18 16 22 22 H 1.48494 * 109.47127 * 209.99890 * 20 18 16 23 23 H 1.48504 * 109.46764 * 329.99426 * 20 18 16 24 24 C 1.40718 * 119.51587 * 359.70628 * 15 14 13 25 25 C 1.37620 * 119.73960 * 0.02562 * 24 15 14 26 26 H 1.09003 * 109.46808 * 300.00201 * 1 2 3 27 27 H 1.08998 * 109.46806 * 59.99563 * 1 2 3 28 28 H 1.08998 * 109.47298 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46900 * 240.00578 * 2 1 3 30 30 H 1.08997 * 109.47248 * 120.00147 * 2 1 3 31 31 H 1.09003 * 109.47496 * 60.00220 * 3 2 1 32 32 H 1.08998 * 109.47689 * 299.99895 * 3 2 1 33 33 H 1.08992 * 109.46951 * 60.00526 * 4 3 2 34 34 H 1.08997 * 109.47248 * 300.00147 * 4 3 2 35 35 H 1.08994 * 109.47243 * 60.00480 * 6 5 4 36 36 H 1.09004 * 109.47372 * 299.99664 * 6 5 4 37 37 H 1.09011 * 109.47083 * 304.99489 * 7 6 5 38 38 H 1.08997 * 109.47087 * 185.00657 * 7 6 5 39 39 H 0.96999 * 119.99814 * 345.00344 * 8 7 6 40 40 H 1.07992 * 119.88185 * 359.96919 * 13 12 9 41 41 H 1.07997 * 120.12556 * 180.27286 * 14 13 12 42 42 H 0.96994 * 120.00050 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.13001 * 179.97438 * 24 15 14 44 44 H 1.08005 * 119.87252 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0464 2.7898 0.0000 6 6 5.4710 2.9026 0.0000 7 6 5.8654 4.3808 0.0013 8 7 5.4274 5.0021 1.2536 9 16 6.0354 6.4751 1.7041 10 8 5.3976 6.8155 2.9275 11 8 7.4465 6.3876 1.5614 12 6 5.4870 7.6521 0.5129 13 6 6.2623 7.9096 -0.6071 14 6 5.8411 8.8226 -1.5468 15 6 4.6243 9.5044 -1.3614 16 6 4.1847 10.4496 -2.3167 17 1 3.5045 11.2360 -2.0250 18 6 4.6310 10.3658 -3.6405 19 7 5.1557 9.2528 -4.0848 20 14 4.4777 11.8434 -4.7731 21 1 5.7052 12.6731 -4.6734 22 1 4.3068 11.3784 -6.1730 23 1 3.2989 12.6533 -4.3733 24 6 3.8483 9.2392 -0.2179 25 6 4.2865 8.3180 0.7059 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8908 34 1 3.9338 0.9285 0.8891 35 1 5.8737 2.4195 -0.8902 36 1 5.8738 2.4187 0.8898 37 1 5.3896 4.8846 -0.8402 38 1 6.9482 4.4680 -0.0883 39 1 4.7844 4.5488 1.8209 40 1 7.1984 7.3889 -0.7448 41 1 6.4445 9.0185 -2.4209 42 1 5.4653 9.1949 -5.0022 43 1 2.9130 9.7570 -0.0654 44 1 3.6924 8.1124 1.5842 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:09 Heat of formation + Delta-G solvation = -132.897237 kcal Electronic energy + Delta-G solvation = -25272.917682 eV Core-core repulsion = 21508.931300 eV Total energy + Delta-G solvation = -3763.986382 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -38.39506 -37.54033 -36.46356 -35.59947 -35.08737 -34.35905 -34.00703 -30.22800 -29.81150 -29.43202 -27.98394 -25.78849 -23.53555 -22.52807 -21.47628 -21.24418 -21.08919 -18.88501 -17.59235 -17.14666 -16.76648 -16.55832 -16.39174 -15.79678 -15.48568 -14.95540 -14.67627 -14.17706 -14.08018 -13.76640 -13.36498 -13.20573 -13.06210 -12.84646 -12.56119 -12.38236 -12.15615 -11.95003 -11.74992 -11.57708 -11.44046 -11.36337 -11.32324 -11.24804 -11.18569 -11.09592 -10.93258 -10.88276 -10.84885 -10.37401 -9.74310 -9.69657 -9.60689 -9.48848 -8.97484 -7.92982 -7.66792 -7.12244 -4.77511 1.31935 2.28328 2.89261 2.93371 2.94084 2.96070 3.48384 3.68057 3.81030 4.26342 4.57405 4.66808 4.72167 4.83995 5.00108 5.02318 5.10080 5.20748 5.25942 5.35119 5.38705 5.42184 5.52209 5.57484 5.61959 5.73041 5.85987 5.95167 6.00182 6.08801 6.10772 6.14480 6.24206 6.70695 6.73865 6.94652 7.08316 7.12491 7.36166 7.41412 7.46517 7.66477 7.80018 7.99888 8.34572 8.54160 8.68083 9.79252 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.003182 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.439523 B = 8796.566668 C =10477.781624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.122 4.122 4 C 0.061 3.939 5 O -0.382 6.382 6 C 0.057 3.943 7 C 0.124 3.876 8 N -1.122 6.122 9 S 2.695 3.305 10 O -0.987 6.987 11 O -0.987 6.987 12 C -0.786 4.786 13 C -0.017 4.017 14 C -0.183 4.183 15 C 0.140 3.860 16 C -0.436 4.436 17 H 0.087 0.913 18 C 0.072 3.928 19 N -0.766 5.766 20 Si 0.917 3.083 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.239 4.239 25 C 0.004 3.996 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.413 0.587 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.288 0.712 43 H 0.100 0.900 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.066 -14.571 1.799 14.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.159 4.159 4 C -0.015 4.015 5 O -0.301 6.301 6 C -0.021 4.021 7 C -0.003 4.003 8 N -0.879 5.879 9 S 2.793 3.207 10 O -0.978 6.978 11 O -0.977 6.977 12 C -0.882 4.882 13 C -0.038 4.038 14 C -0.203 4.203 15 C 0.136 3.864 16 C -0.463 4.463 17 H 0.105 0.895 18 C -0.150 4.150 19 N -0.389 5.389 20 Si 0.741 3.259 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.260 4.260 25 C -0.016 4.016 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.246 0.754 40 H 0.121 0.879 41 H 0.140 0.860 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.412 -14.348 2.213 14.717 hybrid contribution -0.573 0.341 -1.087 1.275 sum -2.985 -14.007 1.126 14.366 Atomic orbital electron populations 1.21758 0.95423 1.01593 1.02202 1.21438 0.96279 0.96153 1.02015 1.21566 0.93541 0.97072 1.03730 1.22505 0.95179 0.83990 0.99869 1.87958 1.20860 1.25941 1.95374 1.22710 0.81724 0.96831 1.00788 1.21231 0.99937 0.91962 0.87143 1.55602 1.61119 1.38868 1.32337 1.01158 0.73216 0.72503 0.73789 1.93487 1.77329 1.83260 1.43680 1.93475 1.30146 1.86658 1.87422 1.29154 1.11256 1.27567 1.20200 1.20261 0.95829 0.95994 0.91693 1.21334 0.97585 1.01510 0.99898 1.17853 0.89625 0.88493 0.90440 1.19943 1.22978 1.10494 0.92929 0.89463 1.26129 0.92454 0.96924 0.99450 1.69819 1.26437 1.25006 1.17617 0.86145 0.80299 0.81053 0.78438 1.18808 1.19899 1.18218 1.21049 1.00942 1.05026 0.98966 1.20162 0.92311 0.93309 0.95836 0.92537 0.92519 0.92732 0.91951 0.91972 0.90974 0.90926 0.93510 0.93578 0.92061 0.92678 0.90383 0.89180 0.75430 0.87911 0.85978 0.90042 0.88224 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -0.88 5.93 -26.73 -0.16 -1.04 16 3 C -0.12 -1.12 5.58 -26.73 -0.15 -1.27 16 4 C 0.06 0.60 5.94 37.16 0.22 0.82 16 5 O -0.38 -4.90 10.14 -35.23 -0.36 -5.26 16 6 C 0.06 0.65 6.13 37.16 0.23 0.88 16 7 C 0.12 1.74 6.61 -4.05 -0.03 1.71 16 8 N -1.12 -17.54 5.96 -10.61 -0.06 -17.61 16 9 S 2.69 52.56 5.73 -107.50 -0.62 51.94 16 10 O -0.99 -21.22 17.26 -57.17 -0.99 -22.21 16 11 O -0.99 -21.01 16.72 -57.17 -0.96 -21.97 16 12 C -0.79 -17.53 5.97 -39.29 -0.23 -17.76 16 13 C -0.02 -0.41 9.49 -39.66 -0.38 -0.78 16 14 C -0.18 -4.59 8.70 -38.87 -0.34 -4.93 16 15 C 0.14 3.57 5.57 -106.83 -0.60 2.98 16 16 C -0.44 -10.78 9.05 -37.74 -0.34 -11.13 16 17 H 0.09 2.05 7.91 -52.49 -0.41 1.63 16 18 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 19 N -0.77 -18.18 10.95 55.55 0.61 -17.57 16 20 Si 0.92 17.12 29.60 -169.99 -5.03 12.09 16 21 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 22 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 23 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 24 C -0.24 -5.76 9.80 -38.87 -0.38 -6.15 16 25 C 0.00 0.09 9.49 -39.66 -0.38 -0.29 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 38 H 0.09 1.19 7.75 -51.93 -0.40 0.79 16 39 H 0.41 5.77 8.51 -34.47 -0.29 5.48 16 40 H 0.10 2.18 7.59 -52.49 -0.40 1.78 16 41 H 0.12 3.09 6.16 -52.49 -0.32 2.76 16 42 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 43 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 44 H 0.10 2.16 7.60 -52.48 -0.40 1.77 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -30.33 380.58 -10.78 -41.11 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.86 Total: 9.80 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: -2.25 Total: -36.06 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.55 Total: -35.18 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -2.30 Total: -49.43 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: 52.56 SS G_CDS: -0.62 Total: 51.94 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.33 -10.78 -41.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.791 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds