Wall clock time and date at job start Tue Mar 31 2020 15:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47017 * 2 1 4 4 C 1.53004 * 109.47017 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47086 * 180.02562 * 4 3 2 6 6 C 1.42903 * 113.99743 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46767 * 180.02562 * 6 5 4 8 8 N 1.46494 * 109.47693 * 64.99907 * 7 6 5 9 9 S 1.65597 * 120.00241 * 164.72209 * 8 7 6 10 10 O 1.42103 * 106.40620 * 178.54272 * 9 8 7 11 11 O 1.42100 * 106.40630 * 311.46546 * 9 8 7 12 12 C 1.76208 * 107.21734 * 65.00320 * 9 8 7 13 13 C 1.38632 * 119.74525 * 269.73112 * 12 9 8 14 14 C 1.37628 * 120.24207 * 179.72238 * 13 12 9 15 15 C 1.40708 * 119.74460 * 0.56531 * 14 13 12 16 16 C 1.41395 * 120.24350 * 179.68162 * 15 14 13 17 17 H 1.07999 * 120.00421 * 204.40366 * 16 15 14 18 18 C 1.39948 * 120.00045 * 24.41232 * 16 15 14 19 19 N 1.30828 * 119.99938 * 17.83864 * 18 16 15 20 20 Si 1.86804 * 120.00206 * 197.84763 * 18 16 15 21 21 H 1.48496 * 109.47170 * 89.99474 * 20 18 16 22 22 H 1.48494 * 109.47127 * 209.99890 * 20 18 16 23 23 H 1.48504 * 109.46764 * 329.99426 * 20 18 16 24 24 C 1.40718 * 119.51587 * 359.70628 * 15 14 13 25 25 C 1.37620 * 119.73960 * 0.02562 * 24 15 14 26 26 H 1.09003 * 109.46808 * 300.00201 * 1 2 3 27 27 H 1.08998 * 109.46806 * 59.99563 * 1 2 3 28 28 H 1.08998 * 109.47298 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46900 * 240.00578 * 2 1 3 30 30 H 1.08997 * 109.47248 * 120.00147 * 2 1 3 31 31 H 1.09003 * 109.47496 * 60.00220 * 3 2 1 32 32 H 1.08998 * 109.47689 * 299.99895 * 3 2 1 33 33 H 1.08992 * 109.46951 * 60.00526 * 4 3 2 34 34 H 1.08997 * 109.47248 * 300.00147 * 4 3 2 35 35 H 1.08994 * 109.47243 * 60.00480 * 6 5 4 36 36 H 1.09004 * 109.47372 * 299.99664 * 6 5 4 37 37 H 1.09011 * 109.47083 * 304.99489 * 7 6 5 38 38 H 1.08997 * 109.47087 * 185.00657 * 7 6 5 39 39 H 0.96999 * 119.99814 * 345.00344 * 8 7 6 40 40 H 1.07992 * 119.88185 * 359.96919 * 13 12 9 41 41 H 1.07997 * 120.12556 * 180.27286 * 14 13 12 42 42 H 0.96994 * 120.00050 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.13001 * 179.97438 * 24 15 14 44 44 H 1.08005 * 119.87252 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0464 2.7898 0.0000 6 6 5.4710 2.9026 0.0000 7 6 5.8654 4.3808 0.0013 8 7 5.4274 5.0021 1.2536 9 16 6.0354 6.4751 1.7041 10 8 5.3976 6.8155 2.9275 11 8 7.4465 6.3876 1.5614 12 6 5.4870 7.6521 0.5129 13 6 6.2623 7.9096 -0.6071 14 6 5.8411 8.8226 -1.5468 15 6 4.6243 9.5044 -1.3614 16 6 4.1847 10.4496 -2.3167 17 1 3.5045 11.2360 -2.0250 18 6 4.6310 10.3658 -3.6405 19 7 5.1557 9.2528 -4.0848 20 14 4.4777 11.8434 -4.7731 21 1 5.7052 12.6731 -4.6734 22 1 4.3068 11.3784 -6.1730 23 1 3.2989 12.6533 -4.3733 24 6 3.8483 9.2392 -0.2179 25 6 4.2865 8.3180 0.7059 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8908 34 1 3.9338 0.9285 0.8891 35 1 5.8737 2.4195 -0.8902 36 1 5.8738 2.4187 0.8898 37 1 5.3896 4.8846 -0.8402 38 1 6.9482 4.4680 -0.0883 39 1 4.7844 4.5488 1.8209 40 1 7.1984 7.3889 -0.7448 41 1 6.4445 9.0185 -2.4209 42 1 5.4653 9.1949 -5.0022 43 1 2.9130 9.7570 -0.0654 44 1 3.6924 8.1124 1.5842 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:09 Heat of formation + Delta-G solvation = -152.300266 kcal Electronic energy + Delta-G solvation = -25273.759060 eV Core-core repulsion = 21508.931300 eV Total energy + Delta-G solvation = -3764.827760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.37917 -39.27171 -38.12791 -36.77749 -36.50446 -35.79630 -35.32254 -32.05908 -31.28311 -30.63101 -28.93020 -27.61200 -24.23167 -23.58714 -23.24355 -22.92798 -21.91346 -20.41093 -19.41836 -18.68578 -18.18934 -17.56473 -17.49593 -17.18275 -16.90589 -15.99945 -15.85065 -15.75167 -15.28824 -15.02101 -14.94781 -14.59598 -14.10555 -13.98670 -13.89691 -13.84639 -13.56503 -13.37449 -13.10648 -13.00942 -12.97228 -12.89523 -12.87399 -12.59532 -12.30687 -12.17878 -11.97852 -11.85335 -11.80893 -11.54569 -11.50690 -11.33501 -11.22741 -10.52225 -10.35869 -9.78196 -9.54079 -8.86667 -6.64337 -0.27378 0.49366 1.06452 1.35961 1.43919 1.50772 2.11956 2.25788 2.52750 2.70691 2.95627 3.53625 3.61081 3.91725 4.01467 4.13476 4.21605 4.25683 4.31705 4.33595 4.43090 4.48648 4.51938 4.59553 4.72004 4.80110 4.86974 4.92834 4.95003 4.96821 5.05314 5.07080 5.13138 5.25221 5.25433 5.36299 5.45508 5.53155 5.60276 5.76868 5.93623 6.15760 6.19851 6.32297 6.49563 6.68915 6.81755 8.08549 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.003182 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.439523 B = 8796.566668 C =10477.781624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.122 4.122 4 C 0.057 3.943 5 O -0.410 6.410 6 C 0.060 3.940 7 C 0.114 3.886 8 N -1.107 6.107 9 S 2.729 3.271 10 O -1.004 7.004 11 O -1.000 7.000 12 C -0.797 4.797 13 C -0.019 4.019 14 C -0.208 4.208 15 C 0.111 3.889 16 C -0.467 4.467 17 H 0.090 0.910 18 C 0.035 3.965 19 N -0.794 5.794 20 Si 0.991 3.009 21 H -0.260 1.260 22 H -0.263 1.263 23 H -0.255 1.255 24 C -0.259 4.259 25 C -0.002 4.002 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.423 0.577 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.299 0.701 43 H 0.109 0.891 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 -15.903 1.658 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.159 4.159 4 C -0.019 4.019 5 O -0.331 6.331 6 C -0.018 4.018 7 C -0.012 4.012 8 N -0.868 5.868 9 S 2.824 3.176 10 O -0.994 6.994 11 O -0.990 6.990 12 C -0.890 4.890 13 C -0.039 4.039 14 C -0.228 4.228 15 C 0.107 3.893 16 C -0.494 4.494 17 H 0.108 0.892 18 C -0.185 4.185 19 N -0.417 5.417 20 Si 0.811 3.189 21 H -0.185 1.185 22 H -0.187 1.187 23 H -0.179 1.179 24 C -0.280 4.280 25 C -0.022 4.022 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.259 0.741 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.110 0.890 43 H 0.127 0.873 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.315 -15.673 2.066 15.977 hybrid contribution -0.605 0.618 -0.982 1.309 sum -2.920 -15.055 1.083 15.374 Atomic orbital electron populations 1.21777 0.95345 1.02222 1.01809 1.21415 0.96329 0.94827 1.02834 1.21580 0.93611 0.98211 1.02528 1.22673 0.95172 0.82882 1.01167 1.87919 1.21605 1.27884 1.95655 1.22737 0.81431 0.94774 1.02819 1.21458 1.00497 0.93779 0.85458 1.55218 1.61254 1.37189 1.33188 1.00201 0.72539 0.72441 0.72451 1.93458 1.77597 1.84014 1.44361 1.93455 1.31180 1.87008 1.87393 1.29673 1.10674 1.28439 1.20209 1.20478 0.96478 0.95386 0.91576 1.21370 0.97938 1.02964 1.00522 1.18208 0.90248 0.89358 0.91479 1.20217 1.24185 1.10942 0.94024 0.89234 1.26992 0.91550 0.99598 1.00327 1.69842 1.26530 1.26697 1.18619 0.85048 0.80254 0.77094 0.76524 1.18460 1.18675 1.17861 1.21275 1.01535 1.05865 0.99299 1.20446 0.92796 0.92820 0.96164 0.92848 0.93055 0.91584 0.91212 0.90999 0.91946 0.92390 0.92306 0.92045 0.89790 0.90771 0.92114 0.88147 0.74128 0.86297 0.86940 0.89011 0.87272 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.25 16 2 C -0.12 -1.50 5.93 30.59 0.18 -1.32 16 3 C -0.12 -2.13 5.58 30.59 0.17 -1.96 16 4 C 0.06 1.00 5.94 71.98 0.43 1.43 16 5 O -0.41 -9.85 10.14 -148.98 -1.51 -11.36 16 6 C 0.06 1.22 6.13 71.98 0.44 1.66 16 7 C 0.11 3.03 6.61 86.38 0.57 3.61 16 8 N -1.11 -32.88 5.96 -187.49 -1.12 -34.00 16 9 S 2.73 103.28 5.73 -56.49 -0.32 102.96 16 10 O -1.00 -41.82 17.26 -128.00 -2.21 -44.03 16 11 O -1.00 -41.18 16.72 -128.00 -2.14 -43.32 16 12 C -0.80 -35.53 5.97 22.46 0.13 -35.40 16 13 C -0.02 -0.90 9.49 22.22 0.21 -0.69 16 14 C -0.21 -10.75 8.70 22.73 0.20 -10.55 16 15 C 0.11 5.84 5.57 -21.29 -0.12 5.72 16 16 C -0.47 -23.69 9.05 23.46 0.21 -23.48 16 17 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16 18 C 0.03 1.62 5.14 85.26 0.44 2.06 16 19 N -0.79 -38.24 10.95 21.83 0.24 -38.00 16 20 Si 0.99 34.85 29.60 68.60 2.03 36.88 16 21 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 22 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 23 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 24 C -0.26 -12.80 9.80 22.73 0.22 -12.58 16 25 C 0.00 -0.11 9.49 22.22 0.21 0.10 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.10 2.47 7.75 -2.39 -0.02 2.45 16 39 H 0.42 11.03 8.51 -96.75 -0.82 10.21 16 40 H 0.12 5.05 7.59 -2.91 -0.02 5.03 16 41 H 0.11 5.91 6.16 -2.91 -0.02 5.89 16 42 H 0.30 12.72 8.30 -92.71 -0.77 11.96 16 43 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 44 H 0.12 5.05 7.60 -2.91 -0.02 5.03 16 Total: -1.00 -65.11 380.58 -0.85 -65.96 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: 0.17 Total: 37.57 kcal Atomic # 6 Polarization: -76.67 SS G_CDS: 4.01 Total: -72.66 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -0.88 Total: -71.99 kcal Atomic # 8 Polarization: -92.85 SS G_CDS: -5.86 Total: -98.71 kcal Atomic # 14 Polarization: 34.85 SS G_CDS: 2.03 Total: 36.88 kcal Atomic # 16 Polarization: 103.28 SS G_CDS: -0.32 Total: 102.96 kcal Total: -65.11 -0.85 -65.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.343 kcal (2) G-P(sol) polarization free energy of solvation -65.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds