Wall clock time and date at job start Tue Mar 31 2020 15:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47163 * 2 1 4 4 N 1.46502 * 109.46826 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99824 * 272.76720 * 4 3 2 6 6 H 1.08003 * 119.99866 * 179.74132 * 5 4 3 7 7 C 1.38811 * 120.00070 * 359.75109 * 5 4 3 8 8 N 1.31618 * 119.99734 * 26.90554 * 7 5 4 9 9 Si 1.86798 * 119.99847 * 206.89982 * 7 5 4 10 10 H 1.48499 * 109.47234 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46711 * 120.00442 * 9 7 5 12 12 H 1.48501 * 109.47080 * 239.99804 * 9 7 5 13 13 S 1.65597 * 120.00178 * 92.76950 * 4 3 2 14 14 O 1.42100 * 106.40259 * 156.45816 * 13 4 3 15 15 O 1.42099 * 106.40277 * 23.53833 * 13 4 3 16 16 C 1.76195 * 107.21979 * 269.99940 * 13 4 3 17 17 C 1.38292 * 119.94632 * 114.99593 * 16 13 4 18 18 C 1.38121 * 120.05849 * 179.97438 * 17 16 13 19 19 C 1.38752 * 119.94366 * 0.02562 * 18 17 16 20 20 O 1.35897 * 120.05787 * 180.02562 * 19 18 17 21 21 C 1.42907 * 116.99883 * 0.02562 * 20 19 18 22 22 C 1.38719 * 119.88938 * 0.02562 * 19 18 17 23 23 C 1.50699 * 120.02812 * 179.97438 * 22 19 18 24 24 C 1.38163 * 119.94078 * 359.70013 * 22 19 18 25 25 C 1.50708 * 119.97221 * 180.31818 * 24 22 19 26 26 H 1.09006 * 109.46580 * 300.00250 * 1 2 3 27 27 H 1.09001 * 109.46723 * 59.99750 * 1 2 3 28 28 H 1.08998 * 109.47327 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46860 * 240.00017 * 2 1 3 30 30 H 1.09001 * 109.46723 * 120.00250 * 2 1 3 31 31 H 1.08994 * 109.47219 * 60.00237 * 3 2 1 32 32 H 1.09001 * 109.47505 * 299.99771 * 3 2 1 33 33 H 0.97005 * 119.99919 * 179.97438 * 8 7 5 34 34 H 1.07997 * 119.96622 * 0.02562 * 17 16 13 35 35 H 1.07999 * 120.02724 * 180.02562 * 18 17 16 36 36 H 1.08995 * 109.46789 * 299.99907 * 21 20 19 37 37 H 1.08995 * 109.46802 * 60.00143 * 21 20 19 38 38 H 1.08996 * 109.47014 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.47074 * 89.99858 * 23 22 19 40 40 H 1.08999 * 109.46908 * 209.99747 * 23 22 19 41 41 H 1.09002 * 109.46928 * 329.99860 * 23 22 19 42 42 H 1.09002 * 109.46828 * 270.25231 * 25 24 22 43 43 H 1.09000 * 109.46605 * 30.25210 * 25 24 22 44 44 H 1.08993 * 109.47117 * 150.25596 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.3849 1.1837 6 1 5.2703 1.3806 1.1830 7 6 3.4967 1.3320 2.3849 8 7 2.2854 0.8185 2.4233 9 14 4.2825 1.9893 3.9469 10 1 5.6383 2.5102 3.6375 11 1 3.4457 3.0850 4.4986 12 1 4.3879 0.8958 4.9461 13 16 4.3325 1.5118 -1.4334 14 8 5.6156 2.0422 -1.1305 15 8 3.4505 2.1028 -2.3779 16 6 4.5930 -0.1473 -1.9662 17 6 3.9960 -0.6010 -3.1282 18 6 4.1990 -1.9010 -3.5484 19 6 5.0024 -2.7521 -2.8032 20 8 5.2042 -4.0315 -3.2147 21 6 4.5586 -4.4333 -4.4246 22 6 5.5993 -2.2950 -1.6374 23 6 6.4720 -3.2170 -0.8254 24 6 5.3976 -0.9921 -1.2245 25 6 6.0516 -0.4926 0.0381 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6768 1.9564 -0.8900 33 1 1.8008 0.7811 3.2629 34 1 3.3711 0.0621 -3.7080 35 1 3.7329 -2.2546 -4.4561 36 1 3.4795 -4.3284 -4.3127 37 1 4.9017 -3.8039 -5.2457 38 1 4.8019 -5.4741 -4.6379 39 1 7.5035 -3.1368 -1.1686 40 1 6.4164 -2.9370 0.2266 41 1 6.1274 -4.2439 -0.9468 42 1 5.3913 -0.6752 0.8860 43 1 6.9940 -1.0183 0.1916 44 1 6.2422 0.5769 -0.0501 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092367335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:36 Heat of formation + Delta-G solvation = -73.130701 kcal Electronic energy + Delta-G solvation = -27969.706769 eV Core-core repulsion = 24208.312058 eV Total energy + Delta-G solvation = -3761.394710 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.04053 -37.49823 -36.45169 -36.03284 -34.49838 -32.97101 -32.24234 -31.28449 -30.96277 -27.59686 -27.15144 -26.07388 -25.48995 -23.60891 -21.94703 -20.52977 -20.44277 -18.48482 -17.49237 -17.16975 -16.80577 -16.29276 -16.02277 -15.73805 -14.59141 -14.44444 -13.93967 -13.77113 -13.71004 -13.60884 -13.34558 -12.96243 -12.70587 -12.58375 -12.37191 -12.18085 -12.00721 -11.90037 -11.84611 -11.50812 -11.43466 -11.19223 -10.96163 -10.91674 -10.79527 -10.66994 -10.48505 -10.46085 -10.38976 -10.29676 -9.83780 -9.63258 -9.51389 -8.99367 -8.20797 -8.09037 -7.95868 -6.49855 -3.85238 1.46998 1.72903 1.78835 3.09859 3.19962 3.27657 3.33249 3.85905 4.04039 4.46791 4.69789 4.94286 5.05743 5.07492 5.09615 5.16575 5.37970 5.53507 5.56878 5.68608 5.74778 5.92151 5.92951 6.01464 6.10412 6.16575 6.22932 6.28179 6.42082 6.43172 6.46245 6.54523 6.65904 6.70472 6.83379 6.92825 6.93518 7.04357 7.10195 7.16504 7.25013 7.58325 7.59721 7.78863 8.33168 8.70853 9.12029 10.41297 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013524 B = 0.005371 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.929182 B = 5211.727505 C = 5525.337964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.132 3.868 4 N -0.806 5.806 5 C -0.255 4.255 6 H 0.124 0.876 7 C 0.030 3.970 8 N -0.830 5.830 9 Si 0.921 3.079 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.281 1.281 13 S 2.563 3.437 14 O -0.983 6.983 15 O -0.999 6.999 16 C -0.697 4.697 17 C 0.001 3.999 18 C -0.240 4.240 19 C 0.156 3.844 20 O -0.317 6.317 21 C 0.028 3.972 22 C -0.149 4.149 23 C -0.100 4.100 24 C 0.063 3.937 25 C -0.174 4.174 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.025 0.975 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.049 0.951 33 H 0.270 0.730 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.959 -7.679 -4.577 8.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.007 3.993 4 N -0.631 5.631 5 C -0.399 4.399 6 H 0.141 0.859 7 C -0.180 4.180 8 N -0.471 5.471 9 Si 0.746 3.254 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.207 1.207 13 S 2.659 3.341 14 O -0.972 6.972 15 O -0.989 6.989 16 C -0.775 4.775 17 C -0.018 4.018 18 C -0.260 4.260 19 C 0.110 3.890 20 O -0.230 6.230 21 C -0.068 4.068 22 C -0.150 4.150 23 C -0.157 4.157 24 C 0.061 3.939 25 C -0.230 4.230 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.151 0.849 35 H 0.142 0.858 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.122 0.878 43 H 0.084 0.916 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.253 -7.174 -5.095 8.888 hybrid contribution -0.172 -0.919 0.187 0.954 sum 1.081 -8.093 -4.908 9.527 Atomic orbital electron populations 1.21595 0.97624 0.99741 1.00538 1.22092 0.94121 0.98793 1.02080 1.21619 0.79218 0.96755 1.01751 1.54983 1.13113 1.77037 1.17973 1.20233 0.93556 1.43825 0.82269 0.85850 1.25367 0.96457 0.96958 0.99236 1.70272 1.12178 1.37566 1.27102 0.85939 0.79963 0.78968 0.80505 1.18616 1.20287 1.20705 1.09769 0.73453 0.77133 0.73779 1.93309 1.41247 1.78727 1.83956 1.93335 1.65633 1.77211 1.62712 1.32158 1.09506 1.30699 1.05180 1.20647 0.93642 0.94278 0.93224 1.21173 1.06059 0.95969 1.02763 1.18901 0.93963 0.82846 0.93253 1.86035 1.69128 1.26433 1.41378 1.23018 0.97532 1.00851 0.85370 1.19166 1.04390 0.95491 0.95978 1.20573 0.97927 0.97986 0.99198 1.19234 0.90254 0.90579 0.93800 1.22036 1.00599 1.05468 0.94905 0.92703 0.94483 0.94460 0.95619 0.87619 0.87492 0.93291 0.91878 0.84919 0.85823 0.92687 0.92765 0.88530 0.91952 0.91164 0.91779 0.87805 0.91551 0.86739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.91 37.16 0.37 -2.07 16 2 C -0.13 -2.74 5.66 -26.73 -0.15 -2.89 16 3 C 0.13 2.93 4.90 -4.04 -0.02 2.91 16 4 N -0.81 -18.65 2.92 -59.91 -0.17 -18.82 16 5 C -0.26 -5.88 7.11 -15.06 -0.11 -5.98 16 6 H 0.12 2.79 5.06 -52.48 -0.27 2.53 16 7 C 0.03 0.66 5.00 -17.43 -0.09 0.57 16 8 N -0.83 -18.50 8.11 55.49 0.45 -18.05 16 9 Si 0.92 17.89 29.63 -169.99 -5.04 12.85 16 10 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 11 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 12 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 13 S 2.56 59.84 5.17 -107.50 -0.56 59.29 16 14 O -0.98 -24.51 14.47 -57.17 -0.83 -25.34 16 15 O -1.00 -24.70 15.53 -57.17 -0.89 -25.59 16 16 C -0.70 -14.87 5.91 -39.56 -0.23 -15.10 16 17 C 0.00 0.02 9.54 -39.60 -0.38 -0.35 16 18 C -0.24 -4.11 9.04 -39.43 -0.36 -4.47 16 19 C 0.16 2.71 6.66 -39.21 -0.26 2.45 16 20 O -0.32 -4.72 9.54 -19.42 -0.19 -4.91 16 21 C 0.03 0.29 9.81 101.05 0.99 1.28 16 22 C -0.15 -2.73 5.89 -104.47 -0.62 -3.34 16 23 C -0.10 -1.51 8.96 36.01 0.32 -1.19 16 24 C 0.06 1.26 5.87 -104.64 -0.61 0.64 16 25 C -0.17 -3.33 7.08 36.01 0.26 -3.07 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.11 2.39 6.09 -51.93 -0.32 2.08 16 31 H 0.11 2.44 5.93 -51.93 -0.31 2.13 16 32 H 0.05 1.07 6.96 -51.93 -0.36 0.71 16 33 H 0.27 5.72 8.31 -40.82 -0.34 5.38 16 34 H 0.13 2.47 7.33 -52.49 -0.38 2.09 16 35 H 0.12 1.71 6.30 -52.49 -0.33 1.37 16 36 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 37 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.00 6.72 -51.93 -0.35 0.65 16 41 H 0.06 0.91 7.53 -51.93 -0.39 0.52 16 42 H 0.10 2.00 6.70 -51.93 -0.35 1.66 16 43 H 0.07 1.07 6.72 -51.93 -0.35 0.72 16 44 H 0.11 2.40 3.46 -51.93 -0.18 2.22 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -27.74 349.33 -8.89 -36.63 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.05 Total: 9.29 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: -0.89 Total: -30.62 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.28 Total: -36.87 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -1.90 Total: -55.84 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.04 Total: 12.85 kcal Atomic # 16 Polarization: 59.84 SS G_CDS: -0.56 Total: 59.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.74 -8.89 -36.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.498 kcal (2) G-P(sol) polarization free energy of solvation -27.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds