Wall clock time and date at job start Tue Mar 31 2020 15:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47163 * 2 1 4 4 N 1.46502 * 109.46826 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99824 * 272.76720 * 4 3 2 6 6 H 1.08003 * 119.99866 * 179.74132 * 5 4 3 7 7 C 1.38811 * 120.00070 * 359.75109 * 5 4 3 8 8 N 1.31618 * 119.99734 * 26.90554 * 7 5 4 9 9 Si 1.86798 * 119.99847 * 206.89982 * 7 5 4 10 10 H 1.48499 * 109.47234 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46711 * 120.00442 * 9 7 5 12 12 H 1.48501 * 109.47080 * 239.99804 * 9 7 5 13 13 S 1.65597 * 120.00178 * 92.76950 * 4 3 2 14 14 O 1.42100 * 106.40259 * 156.45816 * 13 4 3 15 15 O 1.42099 * 106.40277 * 23.53833 * 13 4 3 16 16 C 1.76195 * 107.21979 * 269.99940 * 13 4 3 17 17 C 1.38292 * 119.94632 * 114.99593 * 16 13 4 18 18 C 1.38121 * 120.05849 * 179.97438 * 17 16 13 19 19 C 1.38752 * 119.94366 * 0.02562 * 18 17 16 20 20 O 1.35897 * 120.05787 * 180.02562 * 19 18 17 21 21 C 1.42907 * 116.99883 * 0.02562 * 20 19 18 22 22 C 1.38719 * 119.88938 * 0.02562 * 19 18 17 23 23 C 1.50699 * 120.02812 * 179.97438 * 22 19 18 24 24 C 1.38163 * 119.94078 * 359.70013 * 22 19 18 25 25 C 1.50708 * 119.97221 * 180.31818 * 24 22 19 26 26 H 1.09006 * 109.46580 * 300.00250 * 1 2 3 27 27 H 1.09001 * 109.46723 * 59.99750 * 1 2 3 28 28 H 1.08998 * 109.47327 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46860 * 240.00017 * 2 1 3 30 30 H 1.09001 * 109.46723 * 120.00250 * 2 1 3 31 31 H 1.08994 * 109.47219 * 60.00237 * 3 2 1 32 32 H 1.09001 * 109.47505 * 299.99771 * 3 2 1 33 33 H 0.97005 * 119.99919 * 179.97438 * 8 7 5 34 34 H 1.07997 * 119.96622 * 0.02562 * 17 16 13 35 35 H 1.07999 * 120.02724 * 180.02562 * 18 17 16 36 36 H 1.08995 * 109.46789 * 299.99907 * 21 20 19 37 37 H 1.08995 * 109.46802 * 60.00143 * 21 20 19 38 38 H 1.08996 * 109.47014 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.47074 * 89.99858 * 23 22 19 40 40 H 1.08999 * 109.46908 * 209.99747 * 23 22 19 41 41 H 1.09002 * 109.46928 * 329.99860 * 23 22 19 42 42 H 1.09002 * 109.46828 * 270.25231 * 25 24 22 43 43 H 1.09000 * 109.46605 * 30.25210 * 25 24 22 44 44 H 1.08993 * 109.47117 * 150.25596 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.3849 1.1837 6 1 5.2703 1.3806 1.1830 7 6 3.4967 1.3320 2.3849 8 7 2.2854 0.8185 2.4233 9 14 4.2825 1.9893 3.9469 10 1 5.6383 2.5102 3.6375 11 1 3.4457 3.0850 4.4986 12 1 4.3879 0.8958 4.9461 13 16 4.3325 1.5118 -1.4334 14 8 5.6156 2.0422 -1.1305 15 8 3.4505 2.1028 -2.3779 16 6 4.5930 -0.1473 -1.9662 17 6 3.9960 -0.6010 -3.1282 18 6 4.1990 -1.9010 -3.5484 19 6 5.0024 -2.7521 -2.8032 20 8 5.2042 -4.0315 -3.2147 21 6 4.5586 -4.4333 -4.4246 22 6 5.5993 -2.2950 -1.6374 23 6 6.4720 -3.2170 -0.8254 24 6 5.3976 -0.9921 -1.2245 25 6 6.0516 -0.4926 0.0381 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6768 1.9564 -0.8900 33 1 1.8008 0.7811 3.2629 34 1 3.3711 0.0621 -3.7080 35 1 3.7329 -2.2546 -4.4561 36 1 3.4795 -4.3284 -4.3127 37 1 4.9017 -3.8039 -5.2457 38 1 4.8019 -5.4741 -4.6379 39 1 7.5035 -3.1368 -1.1686 40 1 6.4164 -2.9370 0.2266 41 1 6.1274 -4.2439 -0.9468 42 1 5.3913 -0.6752 0.8860 43 1 6.9940 -1.0183 0.1916 44 1 6.2422 0.5769 -0.0501 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092367335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:34 Heat of formation + Delta-G solvation = -88.917559 kcal Electronic energy + Delta-G solvation = -27970.391338 eV Core-core repulsion = 24208.312058 eV Total energy + Delta-G solvation = -3762.079280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.32645 -38.80280 -38.17102 -37.88213 -36.39086 -34.37053 -33.89617 -32.92146 -32.39784 -28.60155 -28.54659 -27.62886 -26.88682 -25.31493 -23.37216 -22.09866 -21.88883 -20.24391 -18.92729 -18.81031 -18.40691 -17.84855 -17.51695 -16.80962 -16.30513 -16.11419 -15.35939 -15.27697 -15.14353 -14.98277 -14.94711 -14.47721 -14.09901 -14.03128 -13.86203 -13.65491 -13.55881 -13.23496 -13.11896 -12.91346 -12.82896 -12.77272 -12.64254 -12.52852 -12.36185 -12.18848 -12.11027 -11.97839 -11.94741 -11.75783 -11.54308 -11.30278 -11.20600 -10.70616 -9.81535 -9.63351 -9.33902 -8.20997 -5.61719 -0.10178 0.12909 0.30145 1.53862 1.61234 1.72778 2.22667 2.30336 2.49007 2.76183 2.95904 3.30732 3.67717 3.77491 3.95135 4.14154 4.22597 4.33690 4.34385 4.38518 4.40513 4.55567 4.57325 4.67396 4.70773 4.77983 4.79286 4.82610 4.85097 4.93298 5.09545 5.16806 5.21128 5.21889 5.28403 5.31178 5.35807 5.45053 5.55954 5.59614 5.77497 5.83621 6.05591 6.33138 6.59113 6.95436 7.36881 8.70526 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013524 B = 0.005371 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.929182 B = 5211.727505 C = 5525.337964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.123 4.123 3 C 0.134 3.866 4 N -0.814 5.814 5 C -0.273 4.273 6 H 0.122 0.878 7 C 0.003 3.997 8 N -0.840 5.840 9 Si 0.976 3.024 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.274 1.274 13 S 2.565 3.435 14 O -1.007 7.007 15 O -1.022 7.022 16 C -0.721 4.721 17 C -0.015 4.015 18 C -0.235 4.235 19 C 0.160 3.840 20 O -0.320 6.320 21 C 0.014 3.986 22 C -0.160 4.160 23 C -0.098 4.098 24 C 0.044 3.956 25 C -0.169 4.169 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.016 0.984 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.044 0.956 33 H 0.275 0.725 34 H 0.133 0.867 35 H 0.159 0.841 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.128 0.872 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.937 -9.851 -4.761 10.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.008 3.992 4 N -0.639 5.639 5 C -0.417 4.417 6 H 0.139 0.861 7 C -0.205 4.205 8 N -0.480 5.480 9 Si 0.800 3.200 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.200 1.200 13 S 2.666 3.334 14 O -0.997 6.997 15 O -1.012 7.012 16 C -0.803 4.803 17 C -0.035 4.035 18 C -0.254 4.254 19 C 0.114 3.886 20 O -0.233 6.233 21 C -0.080 4.080 22 C -0.162 4.162 23 C -0.154 4.154 24 C 0.042 3.958 25 C -0.225 4.225 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.176 0.824 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.146 0.854 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.212 -9.327 -5.280 10.786 hybrid contribution -0.167 -0.399 0.137 0.454 sum 1.044 -9.726 -5.144 11.052 Atomic orbital electron populations 1.21535 0.95240 1.01002 1.01082 1.21949 0.96178 0.97415 1.00667 1.21615 0.79003 0.97572 1.01008 1.54966 1.13338 1.77751 1.17845 1.20394 0.93728 1.44968 0.82633 0.86107 1.25966 0.96972 0.96664 1.00944 1.70325 1.12622 1.37218 1.27845 0.85113 0.78937 0.78324 0.77621 1.18967 1.20335 1.19998 1.09456 0.72781 0.77570 0.73621 1.93268 1.42236 1.79897 1.84334 1.93282 1.66093 1.78339 1.63496 1.31789 1.11823 1.29730 1.06920 1.20785 0.94035 0.95654 0.92985 1.21480 1.05456 0.94769 1.03693 1.19017 0.92918 0.83919 0.92753 1.86044 1.69393 1.24673 1.43217 1.23428 0.97898 1.02819 0.83831 1.19518 1.04679 0.95204 0.96781 1.20623 0.98099 0.97692 0.99006 1.19384 0.90682 0.91567 0.94137 1.21928 1.01702 1.04358 0.94519 0.92614 0.93468 0.92826 0.96496 0.89378 0.88247 0.93764 0.91426 0.84937 0.82391 0.91881 0.91669 0.85435 0.90496 0.90698 0.90762 0.88544 0.88909 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.91 71.98 0.71 -3.81 16 2 C -0.12 -5.15 5.66 30.59 0.17 -4.97 16 3 C 0.13 6.06 4.90 86.38 0.42 6.48 16 4 N -0.81 -38.85 2.92 -343.45 -1.00 -39.85 16 5 C -0.27 -12.90 7.11 84.03 0.60 -12.30 16 6 H 0.12 5.66 5.06 -2.91 -0.01 5.65 16 7 C 0.00 0.15 5.00 84.86 0.42 0.57 16 8 N -0.84 -37.40 8.11 21.65 0.18 -37.23 16 9 Si 0.98 36.50 29.63 68.60 2.03 38.53 16 10 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 11 H -0.28 -10.37 7.11 99.48 0.71 -9.67 16 12 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 13 S 2.57 124.26 5.17 -56.49 -0.29 123.96 16 14 O -1.01 -52.35 14.47 -128.00 -1.85 -54.20 16 15 O -1.02 -52.37 15.53 -128.00 -1.99 -54.36 16 16 C -0.72 -31.31 5.91 22.28 0.13 -31.18 16 17 C -0.02 -0.60 9.54 22.25 0.21 -0.38 16 18 C -0.23 -7.61 9.04 22.37 0.20 -7.40 16 19 C 0.16 5.23 6.66 22.51 0.15 5.38 16 20 O -0.32 -8.52 9.54 -92.39 -0.88 -9.40 16 21 C 0.01 0.24 9.81 113.37 1.11 1.35 16 22 C -0.16 -5.66 5.89 -19.77 -0.12 -5.77 16 23 C -0.10 -2.73 8.96 71.24 0.64 -2.09 16 24 C 0.04 1.76 5.87 -19.88 -0.12 1.64 16 25 C -0.17 -6.53 7.08 71.24 0.50 -6.03 16 26 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 4.03 6.09 -2.39 -0.01 4.01 16 31 H 0.10 4.63 5.93 -2.39 -0.01 4.62 16 32 H 0.04 2.00 6.96 -2.39 -0.02 1.99 16 33 H 0.28 11.50 8.31 -92.70 -0.77 10.73 16 34 H 0.13 5.02 7.33 -2.91 -0.02 4.99 16 35 H 0.16 3.86 6.30 -2.91 -0.02 3.85 16 36 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 37 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 38 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 2.00 6.72 -2.39 -0.02 1.98 16 41 H 0.07 1.91 7.53 -2.39 -0.02 1.89 16 42 H 0.10 3.81 6.70 -2.39 -0.02 3.79 16 43 H 0.09 2.94 6.72 -2.39 -0.02 2.93 16 44 H 0.09 4.02 3.46 -2.39 -0.01 4.01 16 Total: -1.00 -60.16 349.33 2.27 -57.90 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 1.02 Total: 33.15 kcal Atomic # 6 Polarization: -63.56 SS G_CDS: 5.05 Total: -58.51 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -0.83 Total: -77.07 kcal Atomic # 8 Polarization: -113.24 SS G_CDS: -4.72 Total: -117.96 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Atomic # 16 Polarization: 124.26 SS G_CDS: -0.29 Total: 123.96 kcal Total: -60.16 2.27 -57.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.019 kcal (2) G-P(sol) polarization free energy of solvation -60.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds