Wall clock time and date at job start Tue Mar 31 2020 15:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46962 * 2 1 4 4 N 1.46504 * 109.47302 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99930 * 275.00475 * 4 3 2 6 6 H 1.08001 * 119.99872 * 146.58919 * 5 4 3 7 7 C 1.38810 * 119.99872 * 326.59107 * 5 4 3 8 8 N 1.31624 * 119.99985 * 336.08097 * 7 5 4 9 9 Si 1.86798 * 119.99967 * 156.08454 * 7 5 4 10 10 H 1.48499 * 109.47083 * 89.99943 * 9 7 5 11 11 H 1.48504 * 109.47082 * 209.99970 * 9 7 5 12 12 H 1.48498 * 109.47289 * 329.99499 * 9 7 5 13 13 S 1.65602 * 119.99895 * 94.99761 * 4 3 2 14 14 O 1.42105 * 106.40044 * 208.75839 * 13 4 3 15 15 O 1.42097 * 106.40249 * 341.67757 * 13 4 3 16 16 C 1.76198 * 107.21596 * 95.22097 * 13 4 3 17 17 C 1.38270 * 119.94373 * 269.72608 * 16 13 4 18 18 C 1.38144 * 120.05479 * 179.72301 * 17 16 13 19 19 C 1.50701 * 120.02533 * 180.27235 * 18 17 16 20 20 C 1.38724 * 119.94293 * 0.54958 * 18 17 16 21 21 O 1.35903 * 120.05341 * 179.74417 * 20 18 17 22 22 C 1.42898 * 117.00481 * 269.97620 * 21 20 18 23 23 C 1.38726 * 119.89399 * 359.72361 * 20 18 17 24 24 C 1.50698 * 120.03276 * 179.97438 * 23 20 18 25 25 C 1.38156 * 119.94083 * 359.97438 * 23 20 18 26 26 H 1.09006 * 109.47071 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47530 * 299.99486 * 1 2 3 28 28 H 1.08997 * 109.47344 * 60.00220 * 1 2 3 29 29 H 1.09004 * 109.47266 * 240.00304 * 2 1 3 30 30 H 1.08995 * 109.47260 * 120.00320 * 2 1 3 31 31 H 1.08998 * 109.47274 * 60.00196 * 3 2 1 32 32 H 1.08995 * 109.47394 * 300.00238 * 3 2 1 33 33 H 0.96997 * 120.00197 * 179.97438 * 8 7 5 34 34 H 1.07996 * 119.96808 * 0.02562 * 17 16 13 35 35 H 1.09004 * 109.47043 * 270.27930 * 19 18 17 36 36 H 1.08998 * 109.47216 * 30.27636 * 19 18 17 37 37 H 1.08999 * 109.47165 * 150.27779 * 19 18 17 38 38 H 1.09000 * 109.47295 * 179.97438 * 22 21 20 39 39 H 1.09003 * 109.46905 * 300.00758 * 22 21 20 40 40 H 1.09007 * 109.46900 * 59.99962 * 22 21 20 41 41 H 1.09002 * 109.46965 * 270.02145 * 24 23 20 42 42 H 1.08995 * 109.47114 * 30.01999 * 24 23 20 43 43 H 1.09000 * 109.47372 * 150.02000 * 24 23 20 44 44 H 1.07996 * 119.96678 * 180.02562 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.3390 1.1805 6 1 5.1364 0.8192 1.2121 7 6 3.6686 1.9020 2.3372 8 7 2.8135 2.8993 2.2559 9 14 4.1802 1.2442 4.0089 10 1 5.3770 1.9825 4.4863 11 1 3.0673 1.4279 4.9749 12 1 4.5029 -0.2008 3.8948 13 16 4.3324 1.5678 -1.4297 14 8 5.5681 0.8927 -1.2383 15 8 3.4119 1.2276 -2.4574 16 6 4.7255 3.2702 -1.6572 17 6 3.8486 4.0964 -2.3356 18 6 4.1519 5.4327 -2.5104 19 6 3.1928 6.3339 -3.2445 20 6 5.3427 5.9431 -2.0145 21 8 5.6457 7.2563 -2.1896 22 6 6.3687 7.6032 -3.3724 23 6 6.2236 5.1109 -1.3391 24 6 7.5183 5.6619 -0.7996 25 6 5.9127 3.7765 -1.1615 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 2.4487 3.2925 3.0641 34 1 2.9235 3.6976 -2.7249 35 1 3.4280 6.3248 -4.3088 36 1 2.1733 5.9785 -3.0947 37 1 3.2833 7.3502 -2.8611 38 1 6.5443 8.6788 -3.3886 39 1 7.3240 7.0783 -3.3814 40 1 5.7887 7.3169 -4.2499 41 1 8.2966 5.5684 -1.5571 42 1 7.3866 6.7127 -0.5418 43 1 7.8083 5.1031 0.0902 44 1 6.5980 3.1284 -0.6354 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092368320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:44 Heat of formation + Delta-G solvation = -97.210720 kcal Electronic energy + Delta-G solvation = -27231.729115 eV Core-core repulsion = 23469.290217 eV Total energy + Delta-G solvation = -3762.438898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.89994 -36.96840 -36.34333 -35.81539 -34.40102 -33.28331 -32.77801 -31.08781 -30.92481 -27.92147 -26.36239 -26.02788 -25.99865 -23.79354 -21.90992 -20.74647 -20.60691 -18.44479 -17.46091 -17.12384 -16.47115 -16.27685 -15.93389 -15.54111 -14.87703 -14.44109 -13.98155 -13.76820 -13.70206 -13.38289 -13.34430 -13.10749 -13.02333 -12.81341 -12.61060 -12.21578 -11.94402 -11.84489 -11.72906 -11.67059 -11.52568 -11.18930 -11.17193 -11.07080 -10.95112 -10.70460 -10.68056 -10.58301 -10.45716 -10.17198 -9.80113 -9.77390 -9.65539 -9.26360 -8.34610 -8.19164 -7.88198 -6.62634 -4.16355 1.26826 1.75357 1.84404 3.06181 3.13779 3.21640 3.55784 3.95953 4.11350 4.48988 4.69737 5.02959 5.04789 5.09324 5.22653 5.27109 5.48605 5.53893 5.58434 5.70474 5.72353 5.74947 5.78707 5.79723 5.81229 5.95910 6.01116 6.02470 6.12724 6.25610 6.28223 6.52792 6.56051 6.56923 6.61037 6.75303 6.79024 6.83880 6.88034 7.13344 7.16858 7.26845 7.55143 7.73008 8.23744 8.64022 9.12093 10.31168 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012770 B = 0.005101 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.066923 B = 5488.249285 C = 6310.139035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.123 3.877 4 N -0.798 5.798 5 C -0.243 4.243 6 H 0.111 0.889 7 C 0.038 3.962 8 N -0.817 5.817 9 Si 0.921 3.079 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.262 1.262 13 S 2.528 3.472 14 O -0.986 6.986 15 O -1.005 7.005 16 C -0.643 4.643 17 C -0.024 4.024 18 C -0.128 4.128 19 C -0.106 4.106 20 C 0.117 3.883 21 O -0.336 6.336 22 C 0.037 3.963 23 C -0.127 4.127 24 C -0.107 4.107 25 C -0.014 4.014 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.054 0.946 33 H 0.276 0.724 34 H 0.132 0.868 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.083 6.121 -4.209 7.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C -0.004 4.004 4 N -0.621 5.621 5 C -0.391 4.391 6 H 0.128 0.872 7 C -0.176 4.176 8 N -0.455 5.455 9 Si 0.746 3.254 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.186 1.186 13 S 2.630 3.370 14 O -0.976 6.976 15 O -0.995 6.995 16 C -0.721 4.721 17 C -0.044 4.044 18 C -0.129 4.129 19 C -0.163 4.163 20 C 0.073 3.927 21 O -0.253 6.253 22 C -0.057 4.057 23 C -0.128 4.128 24 C -0.164 4.164 25 C -0.033 4.033 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.150 0.850 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.194 5.817 -4.900 7.699 hybrid contribution 0.337 0.670 0.681 1.013 sum 1.531 6.488 -4.219 7.889 Atomic orbital electron populations 1.21670 0.96488 1.00668 1.01400 1.21870 0.94620 0.98954 1.02040 1.21430 0.79595 0.95605 1.03771 1.53813 1.12008 1.76297 1.19957 1.19831 1.07814 1.28066 0.83414 0.87189 1.25791 0.96961 0.93806 1.01088 1.69987 1.27138 1.17757 1.30644 0.86002 0.78661 0.80266 0.80477 1.19768 1.20358 1.18611 1.11357 0.73783 0.76061 0.75843 1.93346 1.45341 1.72687 1.86257 1.93325 1.63112 1.83787 1.59251 1.32316 1.01500 1.31391 1.06881 1.20592 0.97986 0.91657 0.94120 1.20173 0.96402 0.94912 1.01423 1.20644 0.97838 0.98931 0.98906 1.18367 0.93203 0.82921 0.98190 1.85936 1.75287 1.21649 1.42424 1.22922 0.95239 1.00984 0.86595 1.20224 0.97161 0.93890 1.01496 1.20653 0.93494 1.01537 1.00712 1.20649 0.94666 0.93698 0.94302 0.93437 0.92915 0.93107 0.92618 0.91528 0.87426 0.92805 0.91342 0.85032 0.91927 0.91343 0.91214 0.89110 0.93693 0.93737 0.91914 0.91253 0.91156 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.14 -2.62 6.23 -26.73 -0.17 -2.79 16 3 C 0.12 2.68 4.97 -4.04 -0.02 2.66 16 4 N -0.80 -18.95 2.85 -59.91 -0.17 -19.12 16 5 C -0.24 -5.87 9.17 -15.06 -0.14 -6.01 16 6 H 0.11 2.67 7.45 -52.49 -0.39 2.28 16 7 C 0.04 0.87 4.98 -17.43 -0.09 0.79 16 8 N -0.82 -19.47 11.28 55.49 0.63 -18.84 16 9 Si 0.92 18.11 29.62 -169.99 -5.03 13.08 16 10 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 11 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 12 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 13 S 2.53 60.60 5.61 -107.50 -0.60 60.00 16 14 O -0.99 -25.55 16.27 -57.17 -0.93 -26.48 16 15 O -1.01 -24.98 16.07 -57.17 -0.92 -25.90 16 16 C -0.64 -14.27 5.97 -39.56 -0.24 -14.50 16 17 C -0.02 -0.50 9.17 -39.60 -0.36 -0.86 16 18 C -0.13 -2.34 5.89 -104.48 -0.62 -2.96 16 19 C -0.11 -1.53 9.79 36.01 0.35 -1.18 16 20 C 0.12 2.11 5.67 -39.22 -0.22 1.89 16 21 O -0.34 -5.26 8.51 -19.43 -0.17 -5.42 16 22 C 0.04 0.42 11.13 101.05 1.12 1.55 16 23 C -0.13 -2.36 5.89 -104.47 -0.62 -2.97 16 24 C -0.11 -1.59 9.79 36.00 0.35 -1.24 16 25 C -0.01 -0.29 9.17 -39.60 -0.36 -0.66 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.11 2.44 5.31 -51.93 -0.28 2.17 16 32 H 0.05 1.14 7.46 -51.93 -0.39 0.75 16 33 H 0.28 6.15 8.31 -40.82 -0.34 5.81 16 34 H 0.13 2.55 7.61 -52.49 -0.40 2.15 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 37 H 0.07 0.95 7.53 -51.93 -0.39 0.56 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.97 7.53 -51.93 -0.39 0.58 16 43 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 44 H 0.14 2.79 7.61 -52.49 -0.40 2.39 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -29.38 375.69 -9.00 -38.38 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.84 Total: 6.84 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: -0.63 Total: -28.20 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.46 Total: -37.96 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -2.01 Total: -57.80 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: 60.60 SS G_CDS: -0.60 Total: 60.00 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.38 -9.00 -38.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092368320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.827 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds