Wall clock time and date at job start Tue Mar 31 2020 15:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46962 * 2 1 4 4 N 1.46504 * 109.47302 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99930 * 275.00475 * 4 3 2 6 6 H 1.08001 * 119.99872 * 146.58919 * 5 4 3 7 7 C 1.38810 * 119.99872 * 326.59107 * 5 4 3 8 8 N 1.31624 * 119.99985 * 336.08097 * 7 5 4 9 9 Si 1.86798 * 119.99967 * 156.08454 * 7 5 4 10 10 H 1.48499 * 109.47083 * 89.99943 * 9 7 5 11 11 H 1.48504 * 109.47082 * 209.99970 * 9 7 5 12 12 H 1.48498 * 109.47289 * 329.99499 * 9 7 5 13 13 S 1.65602 * 119.99895 * 94.99761 * 4 3 2 14 14 O 1.42105 * 106.40044 * 208.75839 * 13 4 3 15 15 O 1.42097 * 106.40249 * 341.67757 * 13 4 3 16 16 C 1.76198 * 107.21596 * 95.22097 * 13 4 3 17 17 C 1.38270 * 119.94373 * 269.72608 * 16 13 4 18 18 C 1.38144 * 120.05479 * 179.72301 * 17 16 13 19 19 C 1.50701 * 120.02533 * 180.27235 * 18 17 16 20 20 C 1.38724 * 119.94293 * 0.54958 * 18 17 16 21 21 O 1.35903 * 120.05341 * 179.74417 * 20 18 17 22 22 C 1.42898 * 117.00481 * 269.97620 * 21 20 18 23 23 C 1.38726 * 119.89399 * 359.72361 * 20 18 17 24 24 C 1.50698 * 120.03276 * 179.97438 * 23 20 18 25 25 C 1.38156 * 119.94083 * 359.97438 * 23 20 18 26 26 H 1.09006 * 109.47071 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47530 * 299.99486 * 1 2 3 28 28 H 1.08997 * 109.47344 * 60.00220 * 1 2 3 29 29 H 1.09004 * 109.47266 * 240.00304 * 2 1 3 30 30 H 1.08995 * 109.47260 * 120.00320 * 2 1 3 31 31 H 1.08998 * 109.47274 * 60.00196 * 3 2 1 32 32 H 1.08995 * 109.47394 * 300.00238 * 3 2 1 33 33 H 0.96997 * 120.00197 * 179.97438 * 8 7 5 34 34 H 1.07996 * 119.96808 * 0.02562 * 17 16 13 35 35 H 1.09004 * 109.47043 * 270.27930 * 19 18 17 36 36 H 1.08998 * 109.47216 * 30.27636 * 19 18 17 37 37 H 1.08999 * 109.47165 * 150.27779 * 19 18 17 38 38 H 1.09000 * 109.47295 * 179.97438 * 22 21 20 39 39 H 1.09003 * 109.46905 * 300.00758 * 22 21 20 40 40 H 1.09007 * 109.46900 * 59.99962 * 22 21 20 41 41 H 1.09002 * 109.46965 * 270.02145 * 24 23 20 42 42 H 1.08995 * 109.47114 * 30.01999 * 24 23 20 43 43 H 1.09000 * 109.47372 * 150.02000 * 24 23 20 44 44 H 1.07996 * 119.96678 * 180.02562 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.3390 1.1805 6 1 5.1364 0.8192 1.2121 7 6 3.6686 1.9020 2.3372 8 7 2.8135 2.8993 2.2559 9 14 4.1802 1.2442 4.0089 10 1 5.3770 1.9825 4.4863 11 1 3.0673 1.4279 4.9749 12 1 4.5029 -0.2008 3.8948 13 16 4.3324 1.5678 -1.4297 14 8 5.5681 0.8927 -1.2383 15 8 3.4119 1.2276 -2.4574 16 6 4.7255 3.2702 -1.6572 17 6 3.8486 4.0964 -2.3356 18 6 4.1519 5.4327 -2.5104 19 6 3.1928 6.3339 -3.2445 20 6 5.3427 5.9431 -2.0145 21 8 5.6457 7.2563 -2.1896 22 6 6.3687 7.6032 -3.3724 23 6 6.2236 5.1109 -1.3391 24 6 7.5183 5.6619 -0.7996 25 6 5.9127 3.7765 -1.1615 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 2.4487 3.2925 3.0641 34 1 2.9235 3.6976 -2.7249 35 1 3.4280 6.3248 -4.3088 36 1 2.1733 5.9785 -3.0947 37 1 3.2833 7.3502 -2.8611 38 1 6.5443 8.6788 -3.3886 39 1 7.3240 7.0783 -3.3814 40 1 5.7887 7.3169 -4.2499 41 1 8.2966 5.5684 -1.5571 42 1 7.3866 6.7127 -0.5418 43 1 7.8083 5.1031 0.0902 44 1 6.5980 3.1284 -0.6354 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092368320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:43 Heat of formation + Delta-G solvation = -114.250879 kcal Electronic energy + Delta-G solvation = -27232.468032 eV Core-core repulsion = 23469.290217 eV Total energy + Delta-G solvation = -3763.177815 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.25940 -38.29773 -38.10122 -37.75620 -36.36813 -34.64132 -34.43128 -32.79878 -32.33667 -29.01046 -27.82139 -27.64854 -27.14663 -25.49762 -23.41230 -22.29172 -22.04354 -20.26522 -18.96342 -18.76299 -18.27060 -17.70535 -17.68037 -16.72610 -16.60492 -16.14474 -15.51655 -15.18862 -15.09810 -14.87440 -14.60441 -14.59282 -14.29319 -14.17179 -14.05796 -13.62234 -13.45652 -13.33969 -13.29878 -12.94543 -12.83434 -12.82422 -12.69564 -12.61139 -12.47792 -12.44176 -12.34630 -12.19592 -12.08672 -11.83141 -11.47042 -11.35841 -11.01071 -10.98438 -9.83523 -9.66825 -9.64798 -8.40836 -6.03191 -0.26834 0.04723 0.24774 1.48834 1.53469 1.66131 2.12775 2.32317 2.70301 2.76554 2.89580 3.24442 3.59952 3.72114 3.94023 4.20014 4.24820 4.27487 4.32113 4.37978 4.40364 4.44967 4.54307 4.56856 4.59533 4.67386 4.68271 4.68768 4.78067 4.79757 5.05751 5.06964 5.14977 5.19313 5.21850 5.24117 5.25407 5.28289 5.37950 5.40034 5.63277 5.67496 5.79513 6.40617 6.44461 6.80758 7.29555 8.53910 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012770 B = 0.005101 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.066923 B = 5488.249285 C = 6310.139035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 C 0.120 3.880 4 N -0.806 5.806 5 C -0.266 4.266 6 H 0.100 0.900 7 C 0.011 3.989 8 N -0.838 5.838 9 Si 0.980 3.020 10 H -0.270 1.270 11 H -0.268 1.268 12 H -0.261 1.261 13 S 2.532 3.468 14 O -1.015 7.015 15 O -1.022 7.022 16 C -0.667 4.667 17 C -0.043 4.043 18 C -0.131 4.131 19 C -0.104 4.104 20 C 0.122 3.878 21 O -0.342 6.342 22 C 0.028 3.972 23 C -0.132 4.132 24 C -0.104 4.104 25 C -0.037 4.037 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.283 0.717 34 H 0.133 0.867 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 7.980 -4.011 8.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.629 5.629 5 C -0.415 4.415 6 H 0.117 0.883 7 C -0.201 4.201 8 N -0.476 5.476 9 Si 0.802 3.198 10 H -0.195 1.195 11 H -0.193 1.193 12 H -0.185 1.185 13 S 2.637 3.363 14 O -1.005 7.005 15 O -1.012 7.012 16 C -0.748 4.748 17 C -0.062 4.062 18 C -0.132 4.132 19 C -0.160 4.160 20 C 0.078 3.922 21 O -0.259 6.259 22 C -0.065 4.065 23 C -0.133 4.133 24 C -0.161 4.161 25 C -0.057 4.057 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.150 0.850 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.141 0.859 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.058 7.655 -4.713 9.052 hybrid contribution 0.431 0.269 0.520 0.726 sum 1.489 7.924 -4.193 9.088 Atomic orbital electron populations 1.21634 0.93467 1.02431 1.02031 1.21860 0.97269 0.97060 1.01177 1.21542 0.78720 0.97129 1.03204 1.53818 1.12615 1.76888 1.19545 1.19914 1.08181 1.29186 0.84184 0.88290 1.26463 0.96585 0.93484 1.03579 1.70036 1.27520 1.18239 1.31803 0.85126 0.78545 0.79587 0.76536 1.19503 1.19276 1.18484 1.10988 0.73138 0.76452 0.75748 1.93288 1.46535 1.74057 1.86661 1.93279 1.63401 1.84545 1.59966 1.31970 1.03088 1.30464 1.09301 1.20720 0.97931 0.92831 0.94709 1.20588 0.97224 0.94506 1.00901 1.20726 0.97152 0.98391 0.99757 1.18488 0.92792 0.83891 0.96988 1.85912 1.75896 1.19651 1.44441 1.23261 0.95060 1.03079 0.85113 1.20601 0.98769 0.93005 1.00955 1.20722 0.92179 1.01854 1.01337 1.20711 0.94509 0.95105 0.95335 0.91122 0.92226 0.92534 0.93858 0.91975 0.88142 0.92988 0.90706 0.84955 0.89642 0.90685 0.90162 0.85864 0.93096 0.92986 0.89622 0.90105 0.91001 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 9.91 71.98 0.71 -3.49 16 2 C -0.13 -5.27 6.23 30.59 0.19 -5.08 16 3 C 0.12 5.39 4.97 86.38 0.43 5.82 16 4 N -0.81 -39.76 2.85 -343.45 -0.98 -40.74 16 5 C -0.27 -13.30 9.17 84.03 0.77 -12.53 16 6 H 0.10 5.04 7.45 -2.91 -0.02 5.02 16 7 C 0.01 0.53 4.98 84.86 0.42 0.95 16 8 N -0.84 -40.13 11.28 21.65 0.24 -39.89 16 9 Si 0.98 36.87 29.62 68.60 2.03 38.90 16 10 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 11 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 12 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 13 S 2.53 127.14 5.61 -56.49 -0.32 126.83 16 14 O -1.02 -55.37 16.27 -128.00 -2.08 -57.45 16 15 O -1.02 -52.91 16.07 -128.00 -2.06 -54.96 16 16 C -0.67 -30.68 5.97 22.28 0.13 -30.55 16 17 C -0.04 -1.77 9.17 22.25 0.20 -1.57 16 18 C -0.13 -4.66 5.89 -19.77 -0.12 -4.78 16 19 C -0.10 -2.74 9.79 71.24 0.70 -2.04 16 20 C 0.12 4.24 5.67 22.50 0.13 4.37 16 21 O -0.34 -9.71 8.51 -92.45 -0.79 -10.50 16 22 C 0.03 0.54 11.13 113.37 1.26 1.80 16 23 C -0.13 -4.84 5.89 -19.77 -0.12 -4.96 16 24 C -0.10 -2.92 9.79 71.24 0.70 -2.22 16 25 C -0.04 -1.61 9.17 22.26 0.20 -1.41 16 26 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.10 4.66 5.31 -2.39 -0.01 4.64 16 32 H 0.05 2.28 7.46 -2.39 -0.02 2.27 16 33 H 0.28 12.49 8.31 -92.71 -0.77 11.71 16 34 H 0.13 5.29 7.61 -2.91 -0.02 5.27 16 35 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.07 1.88 8.09 -2.39 -0.02 1.86 16 37 H 0.08 1.95 7.53 -2.39 -0.02 1.94 16 38 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.08 2.07 7.53 -2.39 -0.02 2.05 16 43 H 0.07 1.98 8.09 -2.39 -0.02 1.96 16 44 H 0.13 5.53 7.61 -2.91 -0.02 5.51 16 Total: -1.00 -64.57 375.69 2.66 -61.91 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.98 Total: 31.58 kcal Atomic # 6 Polarization: -61.30 SS G_CDS: 5.62 Total: -55.68 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -0.73 Total: -80.63 kcal Atomic # 8 Polarization: -117.98 SS G_CDS: -4.93 Total: -122.91 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Atomic # 16 Polarization: 127.14 SS G_CDS: -0.32 Total: 126.83 kcal Total: -64.57 2.66 -61.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092368320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.344 kcal (2) G-P(sol) polarization free energy of solvation -64.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds