Wall clock time and date at job start Tue Mar 31 2020 15:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46960 * 2 1 4 4 H 1.08997 * 109.47109 * 305.28245 * 3 2 1 5 5 C 1.52998 * 109.47077 * 65.28651 * 3 2 1 6 6 C 1.53001 * 109.47015 * 185.36165 * 5 3 2 7 7 O 1.42902 * 109.46975 * 174.68444 * 6 5 3 8 8 C 1.53005 * 109.46908 * 185.28202 * 3 2 1 9 9 N 1.46497 * 109.46939 * 64.99947 * 8 3 2 10 10 S 1.65600 * 119.99681 * 164.72251 * 9 8 3 11 11 O 1.42098 * 106.40278 * 178.81697 * 10 9 8 12 12 O 1.42100 * 106.40526 * 311.73797 * 10 9 8 13 13 C 1.76202 * 107.21998 * 65.27850 * 10 9 8 14 14 C 1.38633 * 119.74944 * 269.73391 * 13 10 9 15 15 C 1.37616 * 120.24912 * 179.72401 * 14 13 10 16 16 C 1.40713 * 119.74414 * 0.55499 * 15 14 13 17 17 C 1.41398 * 120.24625 * 179.68519 * 16 15 14 18 18 H 1.08004 * 120.00057 * 153.10833 * 17 16 15 19 19 C 1.39938 * 120.00156 * 333.11117 * 17 16 15 20 20 N 1.30831 * 120.00011 * 342.87194 * 19 17 16 21 21 Si 1.86797 * 120.00471 * 162.87668 * 19 17 16 22 22 H 1.48503 * 109.47510 * 94.95950 * 21 19 17 23 23 H 1.48501 * 109.47160 * 214.96556 * 21 19 17 24 24 H 1.48506 * 109.46692 * 334.96156 * 21 19 17 25 25 C 1.40724 * 119.51009 * 359.71445 * 16 15 14 26 26 C 1.37607 * 119.74506 * 359.97438 * 25 16 15 27 27 H 1.08996 * 109.47058 * 55.10246 * 1 2 3 28 28 H 1.09003 * 109.47000 * 175.10114 * 1 2 3 29 29 H 1.09003 * 109.46881 * 295.10173 * 1 2 3 30 30 H 1.08996 * 109.46631 * 239.99622 * 2 1 3 31 31 H 1.09003 * 109.46582 * 120.00100 * 2 1 3 32 32 H 1.09010 * 109.47132 * 305.35861 * 5 3 2 33 33 H 1.08996 * 109.47588 * 65.36221 * 5 3 2 34 34 H 1.09000 * 109.47267 * 294.68270 * 6 5 3 35 35 H 1.08998 * 109.47189 * 54.68941 * 6 5 3 36 36 H 0.96701 * 113.99806 * 179.97438 * 7 6 5 37 37 H 1.08999 * 109.47202 * 305.00090 * 8 3 2 38 38 H 1.09004 * 109.47165 * 185.00060 * 8 3 2 39 39 H 0.96999 * 119.99941 * 345.00576 * 9 8 3 40 40 H 1.08006 * 119.87274 * 359.96722 * 14 13 10 41 41 H 1.08001 * 120.13026 * 180.27436 * 15 14 13 42 42 H 0.96997 * 120.00009 * 180.02562 * 20 19 17 43 43 H 1.08001 * 120.12277 * 179.97438 * 25 16 15 44 44 H 1.08001 * 119.87970 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6015 1.9829 -0.8389 5 6 1.6414 2.1243 1.3104 6 6 2.0331 3.6023 1.2559 7 8 1.5513 4.2662 2.4260 8 6 3.5643 1.4445 -0.1328 9 7 3.9413 0.9001 -1.4396 10 16 5.4770 1.1234 -2.0177 11 8 5.5326 0.4626 -3.2745 12 8 5.7717 2.5035 -1.8515 13 6 6.5696 0.2489 -0.9471 14 6 7.1157 0.8919 0.1530 15 6 7.9657 0.2171 0.9991 16 6 8.2893 -1.1271 0.7374 17 6 9.1668 -1.8286 1.5960 18 1 9.0929 -2.9025 1.6835 19 6 10.1311 -1.1313 2.3324 20 7 10.4539 0.0910 1.9956 21 14 10.9576 -1.9458 3.7963 22 1 12.2405 -2.5562 3.3641 23 1 11.2221 -0.9280 4.8449 24 1 10.0672 -3.0006 4.3438 25 6 7.7335 -1.7679 -0.3854 26 6 6.8807 -1.0755 -1.2141 27 1 -0.3633 0.5879 -0.8428 28 1 -0.3633 -1.0239 -0.0878 29 1 -0.3633 0.4360 0.9306 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 0.5638 2.0390 1.4512 33 1 2.1558 1.6425 2.1418 34 1 3.1187 3.6891 1.2100 35 1 1.5940 4.0622 0.3706 36 1 1.7642 5.2089 2.4592 37 1 3.9985 0.8300 0.6558 38 1 3.9354 2.4655 -0.0437 39 1 3.2902 0.4124 -1.9679 40 1 6.8699 1.9252 0.3490 41 1 8.3866 0.7186 1.8580 42 1 11.1225 0.5741 2.5058 43 1 7.9754 -2.7993 -0.5958 44 1 6.4532 -1.5651 -2.0767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094956828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:58 Heat of formation + Delta-G solvation = -139.500746 kcal Electronic energy + Delta-G solvation = -25960.740087 eV Core-core repulsion = 22196.467355 eV Total energy + Delta-G solvation = -3764.272732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -38.40098 -37.58314 -36.55692 -36.38000 -35.13648 -34.02906 -33.49320 -31.01592 -30.26341 -29.49252 -27.15753 -25.81700 -23.92370 -22.61510 -21.52975 -21.14824 -20.14744 -18.90212 -17.62350 -17.49448 -17.02275 -16.67999 -16.10731 -15.52829 -15.21662 -15.05980 -14.44114 -14.16886 -14.09967 -13.59496 -13.48321 -13.35567 -13.20663 -12.74985 -12.51960 -12.42479 -12.20593 -11.82945 -11.75634 -11.47454 -11.46386 -11.42516 -11.36430 -11.30450 -11.22636 -10.88120 -10.85307 -10.72990 -10.56749 -10.44082 -10.02857 -9.75827 -9.65139 -9.50522 -9.04437 -7.94997 -7.72018 -7.13850 -4.80501 1.24683 2.24465 2.87195 2.88910 2.90843 2.95572 3.66190 3.72879 4.02551 4.24399 4.49934 4.58994 4.69185 4.89087 5.01090 5.16311 5.20826 5.28721 5.35434 5.39773 5.42556 5.50596 5.59314 5.68098 5.85993 5.91627 5.95600 6.00802 6.04417 6.08300 6.10088 6.25387 6.33276 6.66930 6.71152 6.88642 7.03430 7.28159 7.34331 7.41047 7.46927 7.60777 7.75577 7.96594 8.30908 8.50579 8.63513 9.78894 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.003534 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.515595 B = 7920.725028 C = 8844.906566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.091 4.091 4 H 0.079 0.921 5 C -0.115 4.115 6 C 0.068 3.932 7 O -0.577 6.577 8 C 0.121 3.879 9 N -1.126 6.126 10 S 2.694 3.306 11 O -0.987 6.987 12 O -0.985 6.985 13 C -0.786 4.786 14 C -0.017 4.017 15 C -0.181 4.181 16 C 0.142 3.858 17 C -0.439 4.439 18 H 0.087 0.913 19 C 0.073 3.927 20 N -0.767 5.767 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.238 4.238 26 C 0.002 3.998 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.045 0.955 36 H 0.379 0.621 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.409 0.591 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.289 0.711 43 H 0.100 0.900 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.950 2.989 1.004 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.111 4.111 4 H 0.097 0.903 5 C -0.153 4.153 6 C -0.009 4.009 7 O -0.383 6.383 8 C -0.006 4.006 9 N -0.883 5.883 10 S 2.793 3.207 11 O -0.977 6.977 12 O -0.975 6.975 13 C -0.882 4.882 14 C -0.037 4.037 15 C -0.201 4.201 16 C 0.138 3.862 17 C -0.466 4.466 18 H 0.105 0.895 19 C -0.149 4.149 20 N -0.389 5.389 21 Si 0.739 3.261 22 H -0.191 1.191 23 H -0.196 1.196 24 H -0.180 1.180 25 C -0.258 4.258 26 C -0.018 4.018 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.242 0.758 40 H 0.121 0.879 41 H 0.137 0.863 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.681 3.223 0.532 14.066 hybrid contribution 0.728 -0.375 0.818 1.157 sum -12.954 2.848 1.350 13.332 Atomic orbital electron populations 1.21836 0.95895 1.01569 1.01811 1.21579 0.95709 0.95679 1.02930 1.21358 0.94864 0.96915 0.97936 0.90266 1.21568 1.02582 0.93484 0.97695 1.22351 0.98212 0.93325 0.87046 1.86446 1.81442 1.26645 1.43760 1.21356 0.95211 0.99281 0.84725 1.55750 1.30981 1.72076 1.29495 1.01179 0.72382 0.73692 0.73485 1.93490 1.86465 1.76775 1.40989 1.93478 1.83966 1.33011 1.87056 1.29140 1.29292 1.08608 1.21155 1.20249 0.94531 0.96780 0.92130 1.21285 1.01461 0.96094 1.01248 1.17848 0.87639 0.91935 0.88762 1.19918 1.11889 0.95802 1.19024 0.89467 1.26117 0.96349 0.94639 0.97813 1.69822 1.23759 1.10795 1.34565 0.86159 0.79777 0.80139 0.80038 1.19129 1.19590 1.18022 1.21045 1.06718 0.99840 0.98229 1.20159 0.94014 0.91759 0.95850 0.92822 0.92786 0.92520 0.91372 0.91277 0.90549 0.90704 0.92869 0.93647 0.77440 0.91164 0.90525 0.75788 0.87931 0.86298 0.89974 0.88188 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.56 37.16 0.36 -0.88 16 2 C -0.12 -1.14 5.33 -26.73 -0.14 -1.28 16 3 C -0.09 -0.90 1.95 -90.62 -0.18 -1.08 16 4 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 5 C -0.12 -1.13 4.92 -26.73 -0.13 -1.27 16 6 C 0.07 0.68 6.68 37.16 0.25 0.93 16 7 O -0.58 -5.97 13.66 -35.23 -0.48 -6.45 16 8 C 0.12 1.53 5.49 -4.04 -0.02 1.51 16 9 N -1.13 -15.81 5.85 -10.61 -0.06 -15.87 16 10 S 2.69 50.73 5.73 -107.50 -0.62 50.11 16 11 O -0.99 -20.65 17.26 -57.17 -0.99 -21.63 16 12 O -0.98 -20.72 16.71 -57.17 -0.96 -21.67 16 13 C -0.79 -17.01 5.97 -39.29 -0.23 -17.25 16 14 C -0.02 -0.38 9.49 -39.66 -0.38 -0.75 16 15 C -0.18 -4.45 8.68 -38.87 -0.34 -4.79 16 16 C 0.14 3.56 5.55 -106.82 -0.59 2.97 16 17 C -0.44 -10.72 9.05 -37.74 -0.34 -11.06 16 18 H 0.09 2.01 7.90 -52.48 -0.41 1.59 16 19 C 0.07 1.68 5.13 -17.34 -0.09 1.59 16 20 N -0.77 -18.41 11.08 55.55 0.62 -17.79 16 21 Si 0.92 16.96 29.59 -169.99 -5.03 11.93 16 22 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 23 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 24 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 25 C -0.24 -5.59 9.80 -38.87 -0.38 -5.97 16 26 C 0.00 0.05 9.49 -39.66 -0.38 -0.33 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.44 6.70 -51.93 -0.35 0.10 16 30 H 0.07 0.64 6.78 -51.93 -0.35 0.29 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.72 6.45 -51.92 -0.33 0.38 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.54 6.73 -51.93 -0.35 0.20 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 2.28 9.12 45.56 0.42 2.69 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.00 6.07 -51.93 -0.32 0.68 16 39 H 0.41 4.78 7.38 -34.47 -0.25 4.52 16 40 H 0.10 2.15 7.59 -52.48 -0.40 1.75 16 41 H 0.12 2.97 6.32 -52.49 -0.33 2.64 16 42 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16 43 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 44 H 0.10 2.07 7.60 -52.49 -0.40 1.67 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -31.09 370.29 -10.13 -41.22 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -5.60 Total: 12.22 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: -2.60 Total: -37.65 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.55 Total: -33.66 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -2.42 Total: -49.76 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: 50.73 SS G_CDS: -0.62 Total: 50.11 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.09 -10.13 -41.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094956828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.282 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds