Wall clock time and date at job start Tue Mar 31 2020 15:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46960 * 2 1 4 4 H 1.08997 * 109.47109 * 305.28245 * 3 2 1 5 5 C 1.52998 * 109.47077 * 65.28651 * 3 2 1 6 6 C 1.53001 * 109.47015 * 185.36165 * 5 3 2 7 7 O 1.42902 * 109.46975 * 174.68444 * 6 5 3 8 8 C 1.53005 * 109.46908 * 185.28202 * 3 2 1 9 9 N 1.46497 * 109.46939 * 64.99947 * 8 3 2 10 10 S 1.65600 * 119.99681 * 164.72251 * 9 8 3 11 11 O 1.42098 * 106.40278 * 178.81697 * 10 9 8 12 12 O 1.42100 * 106.40526 * 311.73797 * 10 9 8 13 13 C 1.76202 * 107.21998 * 65.27850 * 10 9 8 14 14 C 1.38633 * 119.74944 * 269.73391 * 13 10 9 15 15 C 1.37616 * 120.24912 * 179.72401 * 14 13 10 16 16 C 1.40713 * 119.74414 * 0.55499 * 15 14 13 17 17 C 1.41398 * 120.24625 * 179.68519 * 16 15 14 18 18 H 1.08004 * 120.00057 * 153.10833 * 17 16 15 19 19 C 1.39938 * 120.00156 * 333.11117 * 17 16 15 20 20 N 1.30831 * 120.00011 * 342.87194 * 19 17 16 21 21 Si 1.86797 * 120.00471 * 162.87668 * 19 17 16 22 22 H 1.48503 * 109.47510 * 94.95950 * 21 19 17 23 23 H 1.48501 * 109.47160 * 214.96556 * 21 19 17 24 24 H 1.48506 * 109.46692 * 334.96156 * 21 19 17 25 25 C 1.40724 * 119.51009 * 359.71445 * 16 15 14 26 26 C 1.37607 * 119.74506 * 359.97438 * 25 16 15 27 27 H 1.08996 * 109.47058 * 55.10246 * 1 2 3 28 28 H 1.09003 * 109.47000 * 175.10114 * 1 2 3 29 29 H 1.09003 * 109.46881 * 295.10173 * 1 2 3 30 30 H 1.08996 * 109.46631 * 239.99622 * 2 1 3 31 31 H 1.09003 * 109.46582 * 120.00100 * 2 1 3 32 32 H 1.09010 * 109.47132 * 305.35861 * 5 3 2 33 33 H 1.08996 * 109.47588 * 65.36221 * 5 3 2 34 34 H 1.09000 * 109.47267 * 294.68270 * 6 5 3 35 35 H 1.08998 * 109.47189 * 54.68941 * 6 5 3 36 36 H 0.96701 * 113.99806 * 179.97438 * 7 6 5 37 37 H 1.08999 * 109.47202 * 305.00090 * 8 3 2 38 38 H 1.09004 * 109.47165 * 185.00060 * 8 3 2 39 39 H 0.96999 * 119.99941 * 345.00576 * 9 8 3 40 40 H 1.08006 * 119.87274 * 359.96722 * 14 13 10 41 41 H 1.08001 * 120.13026 * 180.27436 * 15 14 13 42 42 H 0.96997 * 120.00009 * 180.02562 * 20 19 17 43 43 H 1.08001 * 120.12277 * 179.97438 * 25 16 15 44 44 H 1.08001 * 119.87970 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6015 1.9829 -0.8389 5 6 1.6414 2.1243 1.3104 6 6 2.0331 3.6023 1.2559 7 8 1.5513 4.2662 2.4260 8 6 3.5643 1.4445 -0.1328 9 7 3.9413 0.9001 -1.4396 10 16 5.4770 1.1234 -2.0177 11 8 5.5326 0.4626 -3.2745 12 8 5.7717 2.5035 -1.8515 13 6 6.5696 0.2489 -0.9471 14 6 7.1157 0.8919 0.1530 15 6 7.9657 0.2171 0.9991 16 6 8.2893 -1.1271 0.7374 17 6 9.1668 -1.8286 1.5960 18 1 9.0929 -2.9025 1.6835 19 6 10.1311 -1.1313 2.3324 20 7 10.4539 0.0910 1.9956 21 14 10.9576 -1.9458 3.7963 22 1 12.2405 -2.5562 3.3641 23 1 11.2221 -0.9280 4.8449 24 1 10.0672 -3.0006 4.3438 25 6 7.7335 -1.7679 -0.3854 26 6 6.8807 -1.0755 -1.2141 27 1 -0.3633 0.5879 -0.8428 28 1 -0.3633 -1.0239 -0.0878 29 1 -0.3633 0.4360 0.9306 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 0.5638 2.0390 1.4512 33 1 2.1558 1.6425 2.1418 34 1 3.1187 3.6891 1.2100 35 1 1.5940 4.0622 0.3706 36 1 1.7642 5.2089 2.4592 37 1 3.9985 0.8300 0.6558 38 1 3.9354 2.4655 -0.0437 39 1 3.2902 0.4124 -1.9679 40 1 6.8699 1.9252 0.3490 41 1 8.3866 0.7186 1.8580 42 1 11.1225 0.5741 2.5058 43 1 7.9754 -2.7993 -0.5958 44 1 6.4532 -1.5651 -2.0767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094956828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:58 Heat of formation + Delta-G solvation = -161.836054 kcal Electronic energy + Delta-G solvation = -25961.708619 eV Core-core repulsion = 22196.467355 eV Total energy + Delta-G solvation = -3765.241263 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.39818 -39.24605 -38.12013 -37.27026 -36.78158 -35.78799 -34.55531 -32.06530 -31.76233 -31.30620 -28.07480 -27.61259 -24.83236 -23.38985 -23.27189 -22.95109 -20.99362 -20.35702 -19.41535 -18.70343 -18.20346 -18.10737 -17.36627 -17.19677 -16.24453 -16.02034 -15.82095 -15.62685 -15.18224 -14.97857 -14.92456 -14.50771 -14.30826 -14.11181 -13.97841 -13.65387 -13.57803 -13.33298 -13.11470 -13.02188 -12.95564 -12.87260 -12.74566 -12.56071 -12.39446 -12.19326 -12.02532 -11.70145 -11.54825 -11.49529 -11.42929 -11.28273 -11.20521 -10.78658 -10.32302 -9.76970 -9.55216 -8.86826 -6.65036 -0.29654 0.48315 1.04900 1.35734 1.41569 1.52540 2.11444 2.26643 2.54686 2.93854 3.32292 3.52013 3.56558 3.80114 3.87505 4.11837 4.26711 4.30779 4.32297 4.41011 4.48728 4.59519 4.62929 4.66940 4.76653 4.82831 4.86323 4.94441 5.01352 5.08032 5.12996 5.20275 5.22934 5.23631 5.28272 5.49025 5.52953 5.54412 5.58915 5.74836 5.92690 6.15814 6.22160 6.49018 6.68562 6.80518 6.90605 8.09581 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.003534 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.515595 B = 7920.725028 C = 8844.906566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.080 4.080 4 H 0.094 0.906 5 C -0.113 4.113 6 C 0.065 3.935 7 O -0.595 6.595 8 C 0.113 3.887 9 N -1.106 6.106 10 S 2.727 3.273 11 O -1.003 7.003 12 O -1.004 7.004 13 C -0.794 4.794 14 C -0.019 4.019 15 C -0.204 4.204 16 C 0.114 3.886 17 C -0.471 4.471 18 H 0.092 0.908 19 C 0.035 3.965 20 N -0.802 5.802 21 Si 0.991 3.009 22 H -0.260 1.260 23 H -0.263 1.263 24 H -0.253 1.253 25 C -0.256 4.256 26 C -0.002 4.002 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.396 0.604 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.424 0.576 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.298 0.702 43 H 0.111 0.889 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.348 2.942 1.016 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.100 4.100 4 H 0.112 0.888 5 C -0.151 4.151 6 C -0.013 4.013 7 O -0.403 6.403 8 C -0.013 4.013 9 N -0.868 5.868 10 S 2.822 3.178 11 O -0.994 6.994 12 O -0.994 6.994 13 C -0.887 4.887 14 C -0.039 4.039 15 C -0.224 4.224 16 C 0.111 3.889 17 C -0.498 4.498 18 H 0.110 0.890 19 C -0.184 4.184 20 N -0.425 5.425 21 Si 0.810 3.190 22 H -0.185 1.185 23 H -0.187 1.187 24 H -0.177 1.177 25 C -0.276 4.276 26 C -0.022 4.022 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.245 0.755 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.261 0.739 40 H 0.134 0.866 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.129 0.871 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.064 3.166 0.542 15.403 hybrid contribution 1.043 -0.278 0.736 1.306 sum -14.021 2.889 1.278 14.373 Atomic orbital electron populations 1.21809 0.94636 1.02081 1.02277 1.21606 0.96830 0.95075 1.02631 1.21296 0.92513 0.97633 0.98579 0.88812 1.21544 1.02941 0.93474 0.97133 1.22390 0.97881 0.93466 0.87527 1.86400 1.81589 1.28294 1.44035 1.21562 0.97443 0.98910 0.83423 1.55263 1.29203 1.72118 1.30254 1.00234 0.72652 0.72612 0.72325 1.93462 1.87076 1.76993 1.41825 1.93456 1.84814 1.33951 1.87140 1.29670 1.29742 1.08637 1.20658 1.20447 0.93910 0.97382 0.92187 1.21297 1.02759 0.96544 1.01832 1.18195 0.88542 0.92477 0.89732 1.20211 1.12885 0.96288 1.20418 0.89030 1.26996 0.96389 0.95003 0.99993 1.69861 1.24573 1.12214 1.35873 0.85053 0.78611 0.79121 0.76225 1.18454 1.18747 1.17672 1.21280 1.07355 1.00655 0.98334 1.20461 0.93484 0.92070 0.96162 0.92018 0.92373 0.92325 0.91257 0.92069 0.89666 0.91786 0.93634 0.92256 0.75476 0.91921 0.90669 0.73937 0.86634 0.87519 0.89122 0.87129 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.56 71.98 0.69 -1.38 16 2 C -0.12 -2.07 5.33 30.60 0.16 -1.91 16 3 C -0.08 -1.43 1.95 -10.79 -0.02 -1.45 16 4 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 5 C -0.11 -2.04 4.92 30.59 0.15 -1.89 16 6 C 0.06 1.19 6.68 71.98 0.48 1.67 16 7 O -0.59 -11.45 13.66 -148.98 -2.04 -13.49 16 8 C 0.11 2.70 5.49 86.38 0.47 3.18 16 9 N -1.11 -28.95 5.85 -187.48 -1.10 -30.05 16 10 S 2.73 99.00 5.73 -56.49 -0.32 98.67 16 11 O -1.00 -40.22 17.26 -128.00 -2.21 -42.43 16 12 O -1.00 -40.99 16.71 -128.00 -2.14 -43.12 16 13 C -0.79 -34.15 5.97 22.46 0.13 -34.01 16 14 C -0.02 -0.89 9.49 22.22 0.21 -0.68 16 15 C -0.20 -10.40 8.68 22.73 0.20 -10.21 16 16 C 0.11 5.90 5.55 -21.29 -0.12 5.78 16 17 C -0.47 -23.60 9.05 23.46 0.21 -23.39 16 18 H 0.09 4.32 7.90 -2.91 -0.02 4.30 16 19 C 0.04 1.64 5.13 85.25 0.44 2.08 16 20 N -0.80 -39.39 11.08 21.83 0.24 -39.14 16 21 Si 0.99 34.72 29.59 68.60 2.03 36.75 16 22 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 23 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 24 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 25 C -0.26 -12.21 9.80 22.73 0.22 -11.99 16 26 C 0.00 -0.09 9.49 22.22 0.21 0.12 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.78 6.70 -2.39 -0.02 0.77 16 30 H 0.07 1.14 6.78 -2.39 -0.02 1.12 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.42 6.45 -2.38 -0.02 1.40 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 0.89 6.73 -2.39 -0.02 0.87 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 36 H 0.40 4.21 9.12 -74.06 -0.68 3.54 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.86 6.07 -2.38 -0.01 1.85 16 39 H 0.42 8.81 7.38 -96.74 -0.71 8.09 16 40 H 0.12 4.89 7.59 -2.91 -0.02 4.87 16 41 H 0.11 5.58 6.32 -2.91 -0.02 5.56 16 42 H 0.30 13.02 8.30 -92.71 -0.77 12.25 16 43 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 44 H 0.13 4.87 7.60 -2.91 -0.02 4.85 16 Total: -1.00 -66.49 370.29 -2.45 -68.94 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -0.36 Total: 37.95 kcal Atomic # 6 Polarization: -77.52 SS G_CDS: 3.44 Total: -74.07 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -0.86 Total: -69.19 kcal Atomic # 8 Polarization: -92.66 SS G_CDS: -6.38 Total: -99.04 kcal Atomic # 14 Polarization: 34.72 SS G_CDS: 2.03 Total: 36.75 kcal Atomic # 16 Polarization: 99.00 SS G_CDS: -0.32 Total: 98.67 kcal Total: -66.49 -2.45 -68.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094956828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.899 kcal (2) G-P(sol) polarization free energy of solvation -66.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds