Wall clock time and date at job start Tue Mar 31 2020 15:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52990 * 109.47306 * 2 1 4 4 H 1.09003 * 109.47258 * 177.35568 * 3 2 1 5 5 C 1.53001 * 109.47211 * 57.35512 * 3 2 1 6 6 C 1.53002 * 109.47245 * 65.00321 * 5 3 2 7 7 O 1.42903 * 109.46993 * 180.02562 * 6 5 3 8 8 C 1.52998 * 109.47073 * 297.35550 * 3 2 1 9 9 N 1.46494 * 109.47169 * 295.85234 * 8 3 2 10 10 S 1.65598 * 120.00284 * 164.31857 * 9 8 3 11 11 O 1.42097 * 106.40821 * 178.54314 * 10 9 8 12 12 O 1.42101 * 106.40437 * 311.46490 * 10 9 8 13 13 C 1.76205 * 107.21955 * 65.00053 * 10 9 8 14 14 C 1.38635 * 119.75156 * 269.73298 * 13 10 9 15 15 C 1.37616 * 120.24531 * 179.71927 * 14 13 10 16 16 C 1.40714 * 119.74768 * 0.56975 * 15 14 13 17 17 C 1.41394 * 120.24538 * 179.68649 * 16 15 14 18 18 H 1.08002 * 120.00145 * 207.13279 * 17 16 15 19 19 C 1.39951 * 120.00244 * 27.12565 * 17 16 15 20 20 N 1.30824 * 119.99754 * 15.33000 * 19 17 16 21 21 Si 1.86800 * 120.00161 * 195.33340 * 19 17 16 22 22 H 1.48506 * 109.46742 * 60.00062 * 21 19 17 23 23 H 1.48502 * 109.46989 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46909 * 300.00200 * 21 19 17 25 25 C 1.40714 * 119.51070 * 359.70158 * 16 15 14 26 26 C 1.37622 * 119.74434 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.47080 * 58.47978 * 1 2 3 28 28 H 1.09005 * 109.47646 * 298.48199 * 1 2 3 29 29 H 1.09003 * 109.47471 * 178.48076 * 1 2 3 30 30 H 1.09005 * 109.46991 * 119.99836 * 2 1 3 31 31 H 1.08996 * 109.47311 * 239.99554 * 2 1 3 32 32 H 1.09006 * 109.46973 * 185.00246 * 5 3 2 33 33 H 1.08999 * 109.47151 * 304.99960 * 5 3 2 34 34 H 1.09000 * 109.46709 * 300.00100 * 6 5 3 35 35 H 1.08999 * 109.47342 * 59.99755 * 6 5 3 36 36 H 0.96698 * 113.99186 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47471 * 55.85718 * 8 3 2 38 38 H 1.09010 * 109.47327 * 175.85452 * 8 3 2 39 39 H 0.96999 * 120.00419 * 344.32034 * 9 8 3 40 40 H 1.07997 * 119.87545 * 359.97438 * 14 13 10 41 41 H 1.08003 * 120.12377 * 180.28226 * 15 14 13 42 42 H 0.96996 * 120.00187 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.12638 * 179.97438 * 25 16 15 44 44 H 1.08003 * 119.87583 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1290 1.4427 0.0474 5 6 1.4764 2.1826 1.2146 6 6 2.0315 1.5571 2.4959 7 8 1.5046 2.2482 3.6303 8 6 1.5851 2.1442 -1.2812 9 7 2.2044 1.4955 -2.4395 10 16 1.6111 1.7746 -3.9602 11 8 2.4360 1.0398 -4.8540 12 8 0.2032 1.5994 -3.8801 13 6 1.8807 3.4781 -4.3208 14 6 0.9083 4.4120 -3.9977 15 6 1.1107 5.7458 -4.2696 16 6 2.3049 6.1588 -4.8887 17 6 2.5209 7.5257 -5.1788 18 1 3.1667 7.8086 -5.9969 19 6 1.8978 8.5121 -4.4059 20 7 1.3675 8.2004 -3.2513 21 14 1.8231 10.2736 -5.0230 22 1 1.0918 10.3149 -6.3149 23 1 1.1152 11.1174 -4.0269 24 1 3.2022 10.7886 -5.2181 25 6 3.2824 5.2014 -5.2173 26 6 3.0610 3.8736 -4.9310 27 1 -0.3633 0.5373 -0.8760 28 1 -0.3634 0.4901 0.9033 29 1 -0.3634 -1.0273 -0.0272 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.7667 3.2322 1.1673 33 1 0.3891 2.1061 1.2144 34 1 1.7411 0.5076 2.5431 35 1 3.1188 1.6336 2.4961 36 1 1.8150 1.9045 4.4792 37 1 0.5002 2.0794 -1.3654 38 1 1.8850 3.1917 -1.2479 39 1 2.9620 0.9026 -2.3159 40 1 -0.0096 4.0920 -3.5272 41 1 0.3537 6.4721 -4.0129 42 1 0.9360 8.8841 -2.7154 43 1 4.2024 5.5074 -5.6930 44 1 3.8097 3.1370 -5.1826 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094956829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:01 Heat of formation + Delta-G solvation = -158.443809 kcal Electronic energy + Delta-G solvation = -26011.236397 eV Core-core repulsion = 22246.142233 eV Total energy + Delta-G solvation = -3765.094164 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.43989 -39.35747 -38.11629 -37.32080 -36.77412 -35.78297 -34.52391 -32.06037 -31.30448 -31.22700 -28.29690 -27.61122 -25.25692 -23.63633 -23.29378 -22.95010 -20.51692 -20.06188 -19.41252 -18.68896 -18.36212 -17.87982 -17.21720 -17.04887 -16.91223 -16.16147 -15.82305 -15.78872 -15.16033 -14.95470 -14.82987 -14.68304 -14.10695 -13.96620 -13.78702 -13.60485 -13.58022 -13.51528 -13.09855 -13.00139 -12.89558 -12.87929 -12.71953 -12.59146 -12.56059 -12.20947 -12.00912 -11.64119 -11.54570 -11.46313 -11.35320 -11.27716 -11.22507 -10.72035 -10.31268 -9.76710 -9.55415 -8.84946 -6.65389 -0.28740 0.47948 1.04641 1.35894 1.44276 1.49515 2.11818 2.26370 2.54251 2.94495 3.32790 3.52291 3.64023 3.79988 3.87955 4.13662 4.27722 4.30087 4.32142 4.42272 4.50838 4.57652 4.58499 4.71108 4.74277 4.84966 4.87043 4.92680 4.95036 5.08562 5.13792 5.16590 5.23430 5.26431 5.38071 5.40154 5.52772 5.58435 5.59670 5.75002 5.92769 6.15591 6.23838 6.49051 6.68628 6.80329 6.96375 8.10288 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.003639 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.156563 B = 7692.405983 C = 9461.819688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.120 4.120 3 C -0.080 4.080 4 H 0.095 0.905 5 C -0.122 4.122 6 C 0.078 3.922 7 O -0.600 6.600 8 C 0.117 3.883 9 N -1.105 6.105 10 S 2.727 3.273 11 O -1.002 7.002 12 O -1.002 7.002 13 C -0.795 4.795 14 C -0.021 4.021 15 C -0.203 4.203 16 C 0.113 3.887 17 C -0.471 4.471 18 H 0.091 0.909 19 C 0.035 3.965 20 N -0.800 5.800 21 Si 0.991 3.009 22 H -0.259 1.259 23 H -0.264 1.264 24 H -0.255 1.255 25 C -0.256 4.256 26 C -0.003 4.003 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.397 0.603 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.424 0.576 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.298 0.702 43 H 0.111 0.889 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 -9.944 11.660 15.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.158 4.158 3 C -0.100 4.100 4 H 0.113 0.887 5 C -0.160 4.160 6 C 0.001 3.999 7 O -0.408 6.408 8 C -0.009 4.009 9 N -0.866 5.866 10 S 2.822 3.178 11 O -0.992 6.992 12 O -0.992 6.992 13 C -0.887 4.887 14 C -0.041 4.041 15 C -0.224 4.224 16 C 0.110 3.890 17 C -0.498 4.498 18 H 0.109 0.891 19 C -0.184 4.184 20 N -0.423 5.423 21 Si 0.810 3.190 22 H -0.183 1.183 23 H -0.188 1.188 24 H -0.179 1.179 25 C -0.276 4.276 26 C -0.023 4.023 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.246 0.754 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.261 0.739 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.129 0.871 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.133 -10.045 10.865 14.841 hybrid contribution 0.673 1.143 0.246 1.349 sum 1.806 -8.902 11.112 14.352 Atomic orbital electron populations 1.21968 0.96471 1.01991 1.01856 1.21617 0.95944 0.95138 1.03077 1.21220 1.01682 0.95485 0.91633 0.88659 1.21557 1.01800 0.99789 0.92863 1.22232 0.97277 0.95478 0.84943 1.86445 1.74098 1.62334 1.17940 1.21430 0.98004 0.96223 0.85281 1.55206 1.48001 1.61207 1.22231 1.00251 0.72321 0.73171 0.72098 1.93462 1.70012 1.72011 1.63756 1.93459 1.32443 1.86469 1.86806 1.29706 1.06608 1.23109 1.29325 1.20455 0.95927 0.93056 0.94639 1.21328 0.98537 0.94639 1.07850 1.18196 0.90195 0.93807 0.86814 1.20191 1.24844 0.91096 1.13705 0.89135 1.26962 0.91543 1.06476 0.93391 1.69828 1.24728 1.38692 1.09050 0.85109 0.80117 0.74497 0.79284 1.18330 1.18814 1.17872 1.21314 1.00122 0.93603 1.12593 1.20473 0.93992 0.95799 0.91990 0.93764 0.91874 0.92096 0.89604 0.91482 0.92320 0.91074 0.91739 0.92589 0.75367 0.90819 0.92498 0.73897 0.86753 0.87320 0.89129 0.87059 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 9.20 71.98 0.66 -2.53 16 2 C -0.12 -2.00 5.31 30.59 0.16 -1.84 16 3 C -0.08 -1.51 2.20 -10.80 -0.02 -1.54 16 4 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 5 C -0.12 -2.41 4.78 30.60 0.15 -2.27 16 6 C 0.08 1.20 6.80 71.98 0.49 1.69 16 7 O -0.60 -10.76 13.66 -148.98 -2.04 -12.79 16 8 C 0.12 3.06 5.44 86.38 0.47 3.53 16 9 N -1.11 -30.19 5.46 -187.49 -1.02 -31.22 16 10 S 2.73 100.56 5.73 -56.49 -0.32 100.24 16 11 O -1.00 -40.24 17.26 -128.00 -2.21 -42.44 16 12 O -1.00 -41.40 16.71 -128.00 -2.14 -43.53 16 13 C -0.79 -34.68 5.97 22.46 0.13 -34.55 16 14 C -0.02 -0.98 9.49 22.22 0.21 -0.77 16 15 C -0.20 -10.50 8.67 22.73 0.20 -10.30 16 16 C 0.11 5.92 5.55 -21.29 -0.12 5.80 16 17 C -0.47 -23.76 9.05 23.46 0.21 -23.55 16 18 H 0.09 4.31 7.89 -2.91 -0.02 4.28 16 19 C 0.04 1.64 5.17 85.26 0.44 2.08 16 20 N -0.80 -38.80 10.99 21.83 0.24 -38.56 16 21 Si 0.99 34.92 29.59 68.60 2.03 36.95 16 22 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 23 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 24 H -0.25 -8.64 7.11 99.48 0.71 -7.93 16 25 C -0.26 -12.31 9.80 22.73 0.22 -12.08 16 26 C 0.00 -0.12 9.49 22.22 0.21 0.09 16 27 H 0.04 1.05 6.33 -2.39 -0.02 1.04 16 28 H 0.06 1.14 6.36 -2.38 -0.02 1.12 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.04 6.69 -2.38 -0.02 1.02 16 31 H 0.07 1.13 7.42 -2.39 -0.02 1.11 16 32 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.07 1.51 6.14 -2.39 -0.01 1.49 16 34 H 0.06 0.77 6.62 -2.39 -0.02 0.75 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.40 3.19 9.12 -74.06 -0.68 2.51 16 37 H 0.07 2.07 5.86 -2.39 -0.01 2.05 16 38 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.42 9.03 8.35 -96.75 -0.81 8.22 16 40 H 0.11 4.96 7.59 -2.91 -0.02 4.94 16 41 H 0.11 5.76 6.27 -2.91 -0.02 5.74 16 42 H 0.30 12.91 8.30 -92.71 -0.77 12.14 16 43 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 44 H 0.13 4.94 7.60 -2.91 -0.02 4.92 16 Total: -1.00 -67.00 366.96 -2.49 -69.49 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: -0.45 Total: 38.11 kcal Atomic # 6 Polarization: -79.66 SS G_CDS: 3.42 Total: -76.24 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -0.78 Total: -69.78 kcal Atomic # 8 Polarization: -92.39 SS G_CDS: -6.38 Total: -98.77 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 2.03 Total: 36.95 kcal Atomic # 16 Polarization: 100.56 SS G_CDS: -0.32 Total: 100.24 kcal Total: -67.00 -2.49 -69.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094956829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.954 kcal (2) G-P(sol) polarization free energy of solvation -67.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds