Wall clock time and date at job start Tue Mar 31 2020 14:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00102 * 2 1 4 4 C 1.38759 * 120.05698 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94338 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05925 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.10941 * 359.97438 * 6 5 4 8 8 C 1.38169 * 120.05602 * 0.28025 * 7 6 5 9 9 C 1.50693 * 120.02547 * 179.74355 * 8 7 6 10 10 C 1.53004 * 109.47092 * 118.08856 * 9 8 7 11 11 C 1.53004 * 109.46923 * 238.08632 * 9 8 7 12 12 N 1.46495 * 109.47419 * 358.08858 * 9 8 7 13 13 S 1.65604 * 120.00179 * 157.08223 * 12 9 8 14 14 O 1.42096 * 104.28015 * 176.26358 * 13 12 9 15 15 O 1.42099 * 104.27688 * 304.12610 * 13 12 9 16 16 C 1.81407 * 104.44846 * 60.19409 * 13 12 9 17 17 C 1.52998 * 109.46996 * 171.44341 * 16 13 12 18 18 C 1.50698 * 109.46857 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00422 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99983 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00201 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00245 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46941 * 89.99747 * 22 20 18 24 24 H 1.48492 * 109.47377 * 209.99833 * 22 20 18 25 25 H 1.48507 * 109.47050 * 330.00280 * 22 20 18 26 26 H 1.09003 * 109.47239 * 59.99901 * 1 2 3 27 27 H 1.08999 * 109.47631 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47355 * 300.00158 * 1 2 3 29 29 H 1.07993 * 120.02331 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.97173 * 180.02562 * 5 4 3 31 31 H 1.07997 * 119.94637 * 180.02562 * 6 5 4 32 32 H 1.08002 * 119.96879 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47009 * 60.00168 * 10 9 8 34 34 H 1.08999 * 109.47237 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.47268 * 299.99869 * 10 9 8 36 36 H 1.08998 * 109.46981 * 66.11379 * 11 9 8 37 37 H 1.08998 * 109.46855 * 186.11152 * 11 9 8 38 38 H 1.09000 * 109.47117 * 306.11143 * 11 9 8 39 39 H 0.96993 * 120.00356 * 337.08264 * 12 9 8 40 40 H 1.09006 * 109.47035 * 291.44257 * 16 13 12 41 41 H 1.09000 * 109.46905 * 51.44043 * 16 13 12 42 42 H 1.08996 * 109.47013 * 299.99830 * 17 16 13 43 43 H 1.09002 * 109.47180 * 60.00486 * 17 16 13 44 44 H 0.96998 * 120.00105 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 4.0560 2.5170 0.0000 8 6 3.4311 1.2847 -0.0048 9 6 4.2537 0.0221 -0.0100 10 6 3.9634 -0.7811 1.2595 11 6 3.8929 -0.8166 -1.2378 12 7 5.6769 0.3666 -0.0551 13 16 6.8081 -0.7145 0.4871 14 8 8.0529 -0.0873 0.2110 15 8 6.4106 -0.9979 1.8216 16 6 6.5824 -2.1730 -0.5676 17 6 7.7134 -3.1702 -0.3079 18 6 7.5255 -4.3821 -1.1836 19 1 6.6834 -4.4360 -1.8577 20 6 8.4280 -5.4226 -1.1236 21 7 9.4526 -5.3578 -0.3017 22 14 8.1948 -6.9253 -2.2086 23 1 8.8983 -6.7174 -3.4999 24 1 8.7542 -8.1199 -1.5268 25 1 6.7463 -7.1328 -2.4620 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2129 2.3203 0.0014 30 1 1.3340 4.5113 0.0008 31 1 3.7923 4.6379 -0.0005 32 1 5.1345 2.5751 0.0000 33 1 2.9045 -1.0375 1.2929 34 1 4.5580 -1.6945 1.2555 35 1 4.2204 -0.1836 2.1342 36 1 4.1997 -0.2892 -2.1410 37 1 4.4062 -1.7767 -1.1856 38 1 2.8156 -0.9813 -1.2615 39 1 5.9566 1.2279 -0.4025 40 1 5.6251 -2.6418 -0.3394 41 1 6.5982 -1.8702 -1.6146 42 1 8.6705 -2.7014 -0.5361 43 1 7.6974 -3.4730 0.7391 44 1 10.0878 -6.0897 -0.2597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111339521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:42 Heat of formation + Delta-G solvation = -79.378225 kcal Electronic energy + Delta-G solvation = -26810.510709 eV Core-core repulsion = 23048.845086 eV Total energy + Delta-G solvation = -3761.665623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78276 -38.06844 -37.02563 -36.27750 -35.35596 -33.89256 -31.34072 -31.20867 -30.58912 -29.42484 -27.53218 -27.13189 -25.57823 -23.41304 -22.32377 -21.59458 -20.47175 -18.82447 -18.40325 -17.30697 -16.82195 -16.42511 -16.01643 -15.96228 -15.46070 -15.27338 -14.74022 -14.54592 -14.45007 -14.03441 -13.78079 -13.71550 -13.35561 -12.77963 -12.71651 -12.46929 -12.34671 -12.17127 -11.91136 -11.62769 -11.55427 -11.49959 -11.38442 -11.32641 -11.27057 -11.05497 -11.02144 -10.80726 -10.47369 -10.35744 -10.18421 -9.78815 -9.50263 -9.09684 -8.99082 -8.47565 -8.33071 -6.09699 -4.14978 0.86820 1.09124 1.22229 3.01568 3.17731 3.27863 3.34070 3.36803 3.52981 4.26241 4.36864 4.42005 4.57731 4.70543 4.81515 4.84977 4.88343 4.93361 5.08849 5.14361 5.23456 5.23937 5.25524 5.35349 5.45235 5.62801 5.69935 5.78083 5.83277 5.91044 5.98162 6.04836 6.18618 6.25886 6.30955 6.42850 6.51838 6.56038 6.68028 7.11087 7.19726 7.33517 7.40721 7.83517 8.20752 8.88499 9.49583 11.01379 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.003432 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.662249 B = 8156.827657 C = 9118.511538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.137 3.863 4 C -0.206 4.206 5 C -0.086 4.086 6 C -0.153 4.153 7 C -0.079 4.079 8 C -0.101 4.101 9 C 0.229 3.771 10 C -0.171 4.171 11 C -0.182 4.182 12 N -1.121 6.121 13 S 2.591 3.409 14 O -0.969 6.969 15 O -0.964 6.964 16 C -0.593 4.593 17 C 0.029 3.971 18 C -0.519 4.519 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.410 0.590 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.035 0.965 43 H 0.031 0.969 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.419 16.299 -0.712 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.091 3.909 4 C -0.225 4.225 5 C -0.105 4.105 6 C -0.171 4.171 7 C -0.097 4.097 8 C -0.103 4.103 9 C 0.140 3.860 10 C -0.229 4.229 11 C -0.241 4.241 12 N -0.880 5.880 13 S 2.689 3.311 14 O -0.960 6.960 15 O -0.954 6.954 16 C -0.726 4.726 17 C -0.010 4.010 18 C -0.558 4.558 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.529 5.529 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 H 0.072 0.928 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.149 0.851 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.246 0.754 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.625 16.021 0.165 24.568 hybrid contribution -0.554 -0.491 -1.287 1.484 sum -19.179 15.530 -1.122 24.704 Atomic orbital electron populations 1.23086 0.78758 1.04115 1.01180 1.86176 1.21010 1.26371 1.88331 1.18680 0.91248 0.84478 0.96515 1.21186 0.99923 0.92276 1.09107 1.20921 0.94668 0.96927 0.97938 1.21048 0.93903 0.98331 1.03834 1.20883 1.00245 0.90995 0.97619 1.19241 0.90436 0.95207 1.05455 1.18814 0.78831 0.91754 0.96625 1.22572 1.03451 1.00799 0.96068 1.22703 1.03895 1.00574 0.96905 1.56085 1.17165 1.31893 1.82844 1.05560 0.72672 0.76474 0.76353 1.93542 1.41640 1.74495 1.86288 1.93577 1.82073 1.85242 1.34481 1.30673 1.10674 1.16927 1.14359 1.18960 0.90477 0.92842 0.98739 1.21005 1.10618 1.01372 1.22812 0.92016 1.25065 0.95085 0.98701 0.95642 1.69956 1.13452 1.32816 1.36657 0.86484 0.78433 0.82056 0.80389 1.20505 1.21051 1.19743 0.92752 0.88085 0.92705 0.85429 0.85926 0.85784 0.85074 0.90244 0.90606 0.90639 0.91896 0.90555 0.89847 0.75421 0.85805 0.85954 0.94658 0.95079 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.05 6.14 -19.40 -0.12 -3.17 16 3 C 0.14 1.47 6.26 -39.21 -0.25 1.23 16 4 C -0.21 -1.84 9.04 -39.43 -0.36 -2.20 16 5 C -0.09 -0.73 10.04 -39.61 -0.40 -1.13 16 6 C -0.15 -1.40 10.04 -39.56 -0.40 -1.80 16 7 C -0.08 -0.86 9.21 -39.60 -0.36 -1.22 16 8 C -0.10 -1.21 4.79 -104.47 -0.50 -1.71 16 9 C 0.23 3.03 0.87 -132.97 -0.12 2.91 16 10 C -0.17 -2.47 6.88 37.16 0.26 -2.21 16 11 C -0.18 -2.26 8.24 37.16 0.31 -1.96 16 12 N -1.12 -15.80 5.13 -0.40 0.00 -15.80 16 13 S 2.59 47.84 4.99 -107.50 -0.54 47.31 16 14 O -0.97 -20.84 18.08 -57.54 -1.04 -21.88 16 15 O -0.96 -19.77 14.49 -57.54 -0.83 -20.60 16 16 C -0.59 -11.51 4.27 37.16 0.16 -11.36 16 17 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 18 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 22 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.13 0.84 6.30 -52.49 -0.33 0.51 16 30 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.13 1.29 5.82 -52.49 -0.31 0.99 16 33 H 0.08 1.01 6.28 -51.93 -0.33 0.69 16 34 H 0.08 1.19 5.18 -51.93 -0.27 0.92 16 35 H 0.07 1.16 7.66 -51.93 -0.40 0.76 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.99 4.80 -51.93 -0.25 0.74 16 38 H 0.08 0.96 5.85 -51.93 -0.30 0.65 16 39 H 0.41 4.91 6.26 -34.47 -0.22 4.69 16 40 H 0.12 2.18 5.59 -51.92 -0.29 1.88 16 41 H 0.12 2.13 8.10 -51.92 -0.42 1.71 16 42 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 353.87 15.07 5.33 5.33 Total: -1.00 -35.14 353.87 -8.68 -43.82 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.98 Total: 5.46 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: -1.22 Total: -30.82 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.73 Total: -41.67 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -1.99 Total: -45.66 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 47.84 SS G_CDS: -0.54 Total: 47.31 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.14 -8.68 -43.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111339521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.560 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds