Wall clock time and date at job start Tue Mar 31 2020 14:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00102 * 2 1 4 4 C 1.38759 * 120.05698 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94338 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05925 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.10941 * 359.97438 * 6 5 4 8 8 C 1.38169 * 120.05602 * 0.28025 * 7 6 5 9 9 C 1.50693 * 120.02547 * 179.74355 * 8 7 6 10 10 C 1.53004 * 109.47092 * 118.08856 * 9 8 7 11 11 C 1.53004 * 109.46923 * 238.08632 * 9 8 7 12 12 N 1.46495 * 109.47419 * 358.08858 * 9 8 7 13 13 S 1.65604 * 120.00179 * 157.08223 * 12 9 8 14 14 O 1.42096 * 104.28015 * 176.26358 * 13 12 9 15 15 O 1.42099 * 104.27688 * 304.12610 * 13 12 9 16 16 C 1.81407 * 104.44846 * 60.19409 * 13 12 9 17 17 C 1.52998 * 109.46996 * 171.44341 * 16 13 12 18 18 C 1.50698 * 109.46857 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00422 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99983 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00201 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00245 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46941 * 89.99747 * 22 20 18 24 24 H 1.48492 * 109.47377 * 209.99833 * 22 20 18 25 25 H 1.48507 * 109.47050 * 330.00280 * 22 20 18 26 26 H 1.09003 * 109.47239 * 59.99901 * 1 2 3 27 27 H 1.08999 * 109.47631 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47355 * 300.00158 * 1 2 3 29 29 H 1.07993 * 120.02331 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.97173 * 180.02562 * 5 4 3 31 31 H 1.07997 * 119.94637 * 180.02562 * 6 5 4 32 32 H 1.08002 * 119.96879 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47009 * 60.00168 * 10 9 8 34 34 H 1.08999 * 109.47237 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.47268 * 299.99869 * 10 9 8 36 36 H 1.08998 * 109.46981 * 66.11379 * 11 9 8 37 37 H 1.08998 * 109.46855 * 186.11152 * 11 9 8 38 38 H 1.09000 * 109.47117 * 306.11143 * 11 9 8 39 39 H 0.96993 * 120.00356 * 337.08264 * 12 9 8 40 40 H 1.09006 * 109.47035 * 291.44257 * 16 13 12 41 41 H 1.09000 * 109.46905 * 51.44043 * 16 13 12 42 42 H 1.08996 * 109.47013 * 299.99830 * 17 16 13 43 43 H 1.09002 * 109.47180 * 60.00486 * 17 16 13 44 44 H 0.96998 * 120.00105 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 4.0560 2.5170 0.0000 8 6 3.4311 1.2847 -0.0048 9 6 4.2537 0.0221 -0.0100 10 6 3.9634 -0.7811 1.2595 11 6 3.8929 -0.8166 -1.2378 12 7 5.6769 0.3666 -0.0551 13 16 6.8081 -0.7145 0.4871 14 8 8.0529 -0.0873 0.2110 15 8 6.4106 -0.9979 1.8216 16 6 6.5824 -2.1730 -0.5676 17 6 7.7134 -3.1702 -0.3079 18 6 7.5255 -4.3821 -1.1836 19 1 6.6834 -4.4360 -1.8577 20 6 8.4280 -5.4226 -1.1236 21 7 9.4526 -5.3578 -0.3017 22 14 8.1948 -6.9253 -2.2086 23 1 8.8983 -6.7174 -3.4999 24 1 8.7542 -8.1199 -1.5268 25 1 6.7463 -7.1328 -2.4620 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2129 2.3203 0.0014 30 1 1.3340 4.5113 0.0008 31 1 3.7923 4.6379 -0.0005 32 1 5.1345 2.5751 0.0000 33 1 2.9045 -1.0375 1.2929 34 1 4.5580 -1.6945 1.2555 35 1 4.2204 -0.1836 2.1342 36 1 4.1997 -0.2892 -2.1410 37 1 4.4062 -1.7767 -1.1856 38 1 2.8156 -0.9813 -1.2615 39 1 5.9566 1.2279 -0.4025 40 1 5.6251 -2.6418 -0.3394 41 1 6.5982 -1.8702 -1.6146 42 1 8.6705 -2.7014 -0.5361 43 1 7.6974 -3.4730 0.7391 44 1 10.0878 -6.0897 -0.2597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111339521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:41 Heat of formation + Delta-G solvation = -103.871931 kcal Electronic energy + Delta-G solvation = -26811.572836 eV Core-core repulsion = 23048.845086 eV Total energy + Delta-G solvation = -3762.727750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53338 -38.94597 -38.22188 -37.50917 -36.97290 -35.90517 -33.20597 -32.28489 -31.36493 -30.31214 -28.24458 -28.05510 -27.53097 -24.40715 -23.39273 -22.99222 -21.50225 -20.14842 -19.45447 -18.84491 -18.18237 -17.57026 -17.12348 -16.90963 -16.63963 -16.56453 -16.41735 -15.67590 -15.33942 -15.20267 -14.89122 -14.70143 -14.51769 -14.43824 -13.92295 -13.81242 -13.46171 -13.21194 -13.18146 -13.05319 -12.91844 -12.86357 -12.65858 -12.57758 -12.44204 -12.30323 -12.22628 -12.09794 -12.01547 -11.83114 -11.70890 -11.35522 -11.14715 -10.63087 -10.55306 -9.79772 -9.04944 -8.24370 -6.38142 -0.67139 0.36566 0.51768 1.41778 1.43692 1.54830 1.79391 2.39200 2.42479 2.77150 2.81982 3.09122 3.28132 3.50403 3.87860 3.89102 4.02185 4.06091 4.14605 4.17372 4.30170 4.34138 4.49198 4.50532 4.55604 4.69602 4.73809 4.75079 4.84218 4.92509 4.96280 5.01557 5.11034 5.25250 5.28256 5.36508 5.40262 5.47756 5.55798 5.63255 5.70374 5.88990 6.06707 6.09569 6.50879 6.75370 7.31834 8.88054 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.003432 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.662249 B = 8156.827657 C = 9118.511538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.323 6.323 3 C 0.128 3.872 4 C -0.207 4.207 5 C -0.084 4.084 6 C -0.158 4.158 7 C -0.095 4.095 8 C -0.125 4.125 9 C 0.228 3.772 10 C -0.172 4.172 11 C -0.182 4.182 12 N -1.104 6.104 13 S 2.615 3.385 14 O -1.002 7.002 15 O -0.986 6.986 16 C -0.589 4.589 17 C 0.023 3.977 18 C -0.536 4.536 19 H 0.077 0.923 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.973 3.027 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.257 1.257 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.064 0.936 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.422 0.578 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.007 0.993 43 H 0.005 0.995 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.294 17.180 -2.203 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.082 3.918 4 C -0.226 4.226 5 C -0.102 4.102 6 C -0.176 4.176 7 C -0.114 4.114 8 C -0.127 4.127 9 C 0.140 3.860 10 C -0.230 4.230 11 C -0.241 4.241 12 N -0.867 5.867 13 S 2.712 3.288 14 O -0.992 6.992 15 O -0.976 6.976 16 C -0.721 4.721 17 C -0.016 4.016 18 C -0.575 4.575 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.797 3.203 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.180 1.180 26 H 0.086 0.914 27 H 0.131 0.869 28 H 0.083 0.917 29 H 0.170 0.830 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.149 0.851 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.261 0.739 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.025 0.975 43 H 0.023 0.977 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.512 16.911 -1.336 27.396 hybrid contribution 0.225 -0.661 -0.779 1.046 sum -21.287 16.250 -2.115 26.864 Atomic orbital electron populations 1.23345 0.76899 1.05390 1.02285 1.86125 1.22980 1.26328 1.88287 1.18797 0.90995 0.85407 0.96589 1.21506 1.01166 0.91764 1.08116 1.21317 0.94621 0.97939 0.96288 1.21328 0.94493 0.98559 1.03266 1.21034 1.00594 0.91442 0.98306 1.19173 0.91076 0.94587 1.07873 1.18891 0.77903 0.92906 0.96303 1.22562 1.04157 0.99953 0.96326 1.22701 1.04608 0.99947 0.96795 1.55645 1.17140 1.31342 1.82531 1.04601 0.72307 0.76204 0.75695 1.93491 1.44025 1.75103 1.86601 1.93553 1.82414 1.85718 1.35937 1.30585 1.09096 1.16310 1.16145 1.18811 0.91606 0.94098 0.97074 1.21506 1.10981 1.02008 1.23026 0.90508 1.26115 0.94662 1.02352 0.97108 1.70107 1.14628 1.34077 1.38642 0.85320 0.79192 0.77516 0.78274 1.19639 1.20909 1.18043 0.91443 0.86883 0.91720 0.83017 0.83111 0.83864 0.85055 0.88667 0.92325 0.92147 0.90971 0.91425 0.88722 0.73939 0.83849 0.83741 0.97460 0.97656 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.32 -5.80 6.14 -92.33 -0.57 -6.37 16 3 C 0.13 2.50 6.26 22.51 0.14 2.64 16 4 C -0.21 -3.07 9.04 22.37 0.20 -2.87 16 5 C -0.08 -1.15 10.04 22.25 0.22 -0.92 16 6 C -0.16 -2.54 10.04 22.28 0.22 -2.31 16 7 C -0.10 -1.94 9.21 22.26 0.20 -1.74 16 8 C -0.12 -2.82 4.79 -19.77 -0.09 -2.92 16 9 C 0.23 5.87 0.87 2.86 0.00 5.87 16 10 C -0.17 -4.96 6.88 71.98 0.50 -4.47 16 11 C -0.18 -4.27 8.24 71.98 0.59 -3.67 16 12 N -1.10 -30.84 5.13 -155.19 -0.80 -31.63 16 13 S 2.61 98.76 4.99 -56.49 -0.28 98.48 16 14 O -1.00 -44.30 18.08 -127.65 -2.31 -46.60 16 15 O -0.99 -41.78 14.49 -127.65 -1.85 -43.63 16 16 C -0.59 -23.10 4.27 71.98 0.31 -22.80 16 17 C 0.02 1.22 4.98 29.85 0.15 1.37 16 18 C -0.54 -29.90 9.11 25.60 0.23 -29.67 16 19 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 20 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 21 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 22 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 26 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 27 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.50 7.66 -2.39 -0.02 0.48 16 29 H 0.15 1.42 6.30 -2.91 -0.02 1.40 16 30 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 31 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.13 2.50 5.82 -2.91 -0.02 2.48 16 33 H 0.09 2.38 6.28 -2.39 -0.01 2.37 16 34 H 0.06 1.86 5.18 -2.39 -0.01 1.85 16 35 H 0.06 1.89 7.66 -2.39 -0.02 1.87 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.67 4.80 -2.39 -0.01 1.66 16 38 H 0.09 2.01 5.85 -2.39 -0.01 1.99 16 39 H 0.42 9.91 6.26 -96.75 -0.61 9.31 16 40 H 0.14 5.02 5.59 -2.39 -0.01 5.01 16 41 H 0.14 4.95 8.10 -2.39 -0.02 4.93 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -77.27 353.87 1.19 -76.08 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.42 Total: 25.23 kcal Atomic # 6 Polarization: -64.25 SS G_CDS: 4.25 Total: -60.00 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -0.51 Total: -88.74 kcal Atomic # 8 Polarization: -91.88 SS G_CDS: -4.72 Total: -96.60 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 98.76 SS G_CDS: -0.28 Total: 98.48 kcal Total: -77.27 1.19 -76.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111339521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.788 kcal (2) G-P(sol) polarization free energy of solvation -77.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds