Wall clock time and date at job start Tue Mar 31 2020 15:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47006 * 2 1 4 4 N 1.46492 * 109.47199 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99724 * 276.32333 * 4 3 2 6 6 H 1.07999 * 120.00099 * 139.51735 * 5 4 3 7 7 C 1.38811 * 119.99901 * 319.50941 * 5 4 3 8 8 N 1.31614 * 120.00070 * 339.42931 * 7 5 4 9 9 Si 1.86800 * 119.99727 * 159.42198 * 7 5 4 10 10 H 1.48497 * 109.47445 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47016 * 120.00271 * 9 7 5 12 12 H 1.48504 * 109.47397 * 240.00115 * 9 7 5 13 13 S 1.65598 * 120.00357 * 96.31919 * 4 3 2 14 14 O 1.42103 * 106.40566 * 155.95899 * 13 4 3 15 15 O 1.42099 * 106.40063 * 23.04014 * 13 4 3 16 16 C 1.76203 * 107.22036 * 269.49835 * 13 4 3 17 17 C 1.38288 * 119.94389 * 346.47637 * 16 13 4 18 18 C 1.38117 * 120.05441 * 179.97438 * 17 16 13 19 19 C 1.50704 * 120.02552 * 180.02562 * 18 17 16 20 20 C 1.38757 * 119.94721 * 0.02562 * 18 17 16 21 21 O 1.35903 * 120.05582 * 179.97438 * 20 18 17 22 22 C 1.42894 * 116.99560 * 179.97438 * 21 20 18 23 23 C 1.38705 * 119.88706 * 359.97438 * 20 18 17 24 24 C 1.38168 * 119.94437 * 0.02562 * 23 20 18 25 25 C 1.50700 * 119.97228 * 179.97438 * 24 23 20 26 26 H 1.09005 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47430 * 300.00268 * 1 2 3 28 28 H 1.08997 * 109.46921 * 60.00777 * 1 2 3 29 29 H 1.08994 * 109.47430 * 239.99732 * 2 1 3 30 30 H 1.09006 * 109.46909 * 119.99366 * 2 1 3 31 31 H 1.08993 * 109.47571 * 59.99187 * 3 2 1 32 32 H 1.09006 * 109.46769 * 299.99451 * 3 2 1 33 33 H 0.96999 * 119.99942 * 180.02562 * 8 7 5 34 34 H 1.07998 * 119.96795 * 0.27909 * 17 16 13 35 35 H 1.09000 * 109.46855 * 90.00656 * 19 18 17 36 36 H 1.08998 * 109.47135 * 210.00022 * 19 18 17 37 37 H 1.08992 * 109.47291 * 330.00627 * 19 18 17 38 38 H 1.08994 * 109.47720 * 299.99737 * 22 21 20 39 39 H 1.09008 * 109.47061 * 60.00153 * 22 21 20 40 40 H 1.09004 * 109.47136 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.02845 * 179.97438 * 23 20 18 42 42 H 1.09011 * 109.46963 * 94.34105 * 25 24 23 43 43 H 1.08998 * 109.47338 * 214.33400 * 25 24 23 44 44 H 1.08999 * 109.47298 * 334.34242 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.3122 1.1797 6 1 5.0752 0.6963 1.2246 7 6 3.7438 1.9716 2.3171 8 7 2.9447 3.0113 2.2046 9 14 4.2786 1.3832 4.0074 10 1 5.1708 0.2051 3.8621 11 1 5.0085 2.4734 4.7030 12 1 3.0821 1.0037 4.8010 13 16 4.3336 1.6002 -1.4244 14 8 5.6122 2.1220 -1.0895 15 8 3.4483 2.2376 -2.3350 16 6 4.6075 -0.0237 -2.0510 17 6 4.4032 -1.1217 -1.2356 18 6 4.6167 -2.3957 -1.7245 19 6 4.3933 -3.5919 -0.8355 20 6 5.0371 -2.5733 -3.0349 21 8 5.2484 -3.8258 -3.5181 22 6 5.6798 -3.9329 -4.8761 23 6 5.2414 -1.4703 -3.8507 24 6 5.0264 -0.1979 -3.3569 25 6 5.2486 1.0009 -4.2426 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6766 1.9564 0.8898 32 1 1.6767 1.9563 -0.8901 33 1 2.6338 3.4723 2.9994 34 1 4.0717 -0.9831 -0.2171 35 1 3.3601 -3.9263 -0.9292 36 1 5.0643 -4.3972 -1.1344 37 1 4.5938 -3.3175 0.2001 38 1 4.9307 -3.4887 -5.5315 39 1 6.6272 -3.4079 -4.9988 40 1 5.8112 -4.9839 -5.1338 41 1 5.5689 -1.6059 -4.8709 42 1 4.3050 1.2911 -4.7047 43 1 5.6300 1.8287 -3.6447 44 1 5.9714 0.7501 -5.0189 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128050968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:49 Heat of formation + Delta-G solvation = -92.822316 kcal Electronic energy + Delta-G solvation = -27581.711736 eV Core-core repulsion = 23819.463133 eV Total energy + Delta-G solvation = -3762.248603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.26104 -37.62358 -36.24020 -35.90320 -34.68509 -33.64413 -32.63545 -30.91409 -30.19762 -29.13354 -27.71116 -25.85441 -24.69409 -23.68267 -22.48535 -21.45713 -20.42387 -18.44758 -17.61524 -17.20527 -16.65463 -16.30893 -15.91976 -15.83738 -14.82072 -14.49845 -14.30379 -14.03508 -13.88528 -13.69167 -13.35474 -13.16164 -13.11664 -12.84577 -12.78503 -12.39107 -11.95467 -11.87294 -11.80726 -11.68317 -11.61328 -11.46301 -11.05601 -11.03830 -10.89484 -10.84773 -10.81938 -10.69443 -10.52483 -10.35868 -10.10049 -9.90267 -9.65288 -9.00013 -8.61910 -8.13887 -7.69627 -6.28602 -4.02252 1.24033 1.46805 1.62108 3.15710 3.19543 3.28754 3.32372 3.66456 4.10585 4.42379 4.65329 4.77392 4.85424 4.93999 4.97025 5.03138 5.18333 5.23642 5.32352 5.54861 5.67034 5.68560 5.73488 5.73876 5.78923 5.81811 5.90563 5.91487 6.00495 6.12086 6.29352 6.33468 6.35641 6.40091 6.48708 6.54918 6.61657 6.72715 6.89055 6.91646 7.32837 7.34411 7.41174 7.76433 8.41581 9.00166 9.39266 10.74476 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.005124 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.141872 B = 5463.157389 C = 5939.802365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.122 3.878 4 N -0.842 5.842 5 C -0.291 4.291 6 H 0.090 0.910 7 C 0.046 3.954 8 N -0.852 5.852 9 Si 0.913 3.087 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.280 1.280 13 S 2.632 3.368 14 O -0.972 6.972 15 O -0.998 6.998 16 C -0.684 4.684 17 C 0.016 3.984 18 C -0.145 4.145 19 C -0.101 4.101 20 C 0.163 3.837 21 O -0.313 6.313 22 C 0.025 3.975 23 C -0.230 4.230 24 C 0.040 3.960 25 C -0.143 4.143 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.268 0.732 34 H 0.156 0.844 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.130 0.870 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 -12.052 -8.866 14.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C -0.005 4.005 4 N -0.673 5.673 5 C -0.427 4.427 6 H 0.108 0.892 7 C -0.163 4.163 8 N -0.490 5.490 9 Si 0.739 3.261 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.206 1.206 13 S 2.729 3.271 14 O -0.962 6.962 15 O -0.988 6.988 16 C -0.766 4.766 17 C -0.003 4.003 18 C -0.147 4.147 19 C -0.158 4.158 20 C 0.118 3.882 21 O -0.226 6.226 22 C -0.070 4.070 23 C -0.249 4.249 24 C 0.038 3.962 25 C -0.199 4.199 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.174 0.826 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.148 0.852 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.497 -11.366 -9.240 14.656 hybrid contribution 0.351 -0.831 0.421 0.996 sum 0.848 -12.197 -8.819 15.075 Atomic orbital electron populations 1.21678 0.96608 1.00504 1.01572 1.22052 0.94845 0.99887 1.01497 1.21327 0.80339 0.94530 1.04290 1.52487 1.11446 1.85787 1.17606 1.19104 1.12101 1.26418 0.85126 0.89246 1.25450 0.97105 0.93602 1.00105 1.70010 1.32935 1.16055 1.30016 0.86104 0.78577 0.79146 0.82273 1.19054 1.20693 1.20559 1.04992 0.74273 0.73464 0.74324 1.93457 1.43059 1.76201 1.83454 1.93413 1.65930 1.72874 1.66584 1.31244 1.16977 1.25301 1.03127 1.20957 0.90154 0.89643 0.99524 1.19347 1.06720 0.96151 0.92459 1.20579 1.01951 0.94920 0.98360 1.18946 0.93305 0.83207 0.92760 1.86063 1.81964 1.25427 1.29125 1.23069 0.99435 1.03495 0.80971 1.21030 1.11358 0.92043 1.00471 1.19186 0.90433 0.94668 0.91874 1.21198 1.03795 0.95260 0.99680 0.93632 0.92736 0.93171 0.93409 0.91311 0.87502 0.92073 0.92220 0.82606 0.91499 0.91527 0.91183 0.92558 0.92581 0.88287 0.85180 0.88597 0.91206 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.14 -2.62 5.51 -26.73 -0.15 -2.77 16 3 C 0.12 2.71 5.31 -4.04 -0.02 2.69 16 4 N -0.84 -20.33 1.95 -59.91 -0.12 -20.45 16 5 C -0.29 -7.35 8.11 -15.06 -0.12 -7.47 16 6 H 0.09 2.20 7.91 -52.49 -0.42 1.79 16 7 C 0.05 1.17 5.01 -17.43 -0.09 1.08 16 8 N -0.85 -22.46 11.55 55.49 0.64 -21.82 16 9 Si 0.91 19.49 29.60 -169.99 -5.03 14.46 16 10 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 13 S 2.63 63.00 4.27 -107.50 -0.46 62.54 16 14 O -0.97 -26.25 16.95 -57.17 -0.97 -27.22 16 15 O -1.00 -24.71 15.44 -57.17 -0.88 -25.59 16 16 C -0.68 -13.90 5.83 -39.56 -0.23 -14.13 16 17 C 0.02 0.29 7.95 -39.61 -0.31 -0.02 16 18 C -0.15 -2.38 5.89 -104.47 -0.62 -3.00 16 19 C -0.10 -1.35 9.79 36.01 0.35 -1.00 16 20 C 0.16 2.53 6.66 -39.22 -0.26 2.27 16 21 O -0.31 -4.09 9.54 -19.43 -0.19 -4.28 16 22 C 0.03 0.22 9.81 101.05 0.99 1.21 16 23 C -0.23 -3.52 8.67 -39.43 -0.34 -3.86 16 24 C 0.04 0.72 5.87 -104.65 -0.61 0.10 16 25 C -0.14 -2.32 8.74 36.01 0.31 -2.01 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.85 6.86 -51.93 -0.36 0.49 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.11 2.55 5.67 -51.93 -0.29 2.26 16 32 H 0.06 1.36 6.89 -51.93 -0.36 1.00 16 33 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 34 H 0.16 2.87 6.01 -52.49 -0.32 2.56 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.82 7.53 -51.93 -0.39 0.43 16 37 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 39 H 0.06 0.45 7.66 -51.92 -0.40 0.05 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.13 1.54 6.30 -52.49 -0.33 1.21 16 42 H 0.10 1.49 8.13 -51.92 -0.42 1.07 16 43 H 0.07 1.27 6.63 -51.93 -0.34 0.92 16 44 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -31.72 364.24 -8.78 -40.50 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.53 Total: 5.15 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: -0.73 Total: -28.78 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.52 Total: -42.27 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -2.04 Total: -57.09 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Atomic # 16 Polarization: 63.00 SS G_CDS: -0.46 Total: 62.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.72 -8.78 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128050968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.325 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds