Wall clock time and date at job start Tue Mar 31 2020 15:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47006 * 2 1 4 4 N 1.46492 * 109.47199 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99724 * 276.32333 * 4 3 2 6 6 H 1.07999 * 120.00099 * 139.51735 * 5 4 3 7 7 C 1.38811 * 119.99901 * 319.50941 * 5 4 3 8 8 N 1.31614 * 120.00070 * 339.42931 * 7 5 4 9 9 Si 1.86800 * 119.99727 * 159.42198 * 7 5 4 10 10 H 1.48497 * 109.47445 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47016 * 120.00271 * 9 7 5 12 12 H 1.48504 * 109.47397 * 240.00115 * 9 7 5 13 13 S 1.65598 * 120.00357 * 96.31919 * 4 3 2 14 14 O 1.42103 * 106.40566 * 155.95899 * 13 4 3 15 15 O 1.42099 * 106.40063 * 23.04014 * 13 4 3 16 16 C 1.76203 * 107.22036 * 269.49835 * 13 4 3 17 17 C 1.38288 * 119.94389 * 346.47637 * 16 13 4 18 18 C 1.38117 * 120.05441 * 179.97438 * 17 16 13 19 19 C 1.50704 * 120.02552 * 180.02562 * 18 17 16 20 20 C 1.38757 * 119.94721 * 0.02562 * 18 17 16 21 21 O 1.35903 * 120.05582 * 179.97438 * 20 18 17 22 22 C 1.42894 * 116.99560 * 179.97438 * 21 20 18 23 23 C 1.38705 * 119.88706 * 359.97438 * 20 18 17 24 24 C 1.38168 * 119.94437 * 0.02562 * 23 20 18 25 25 C 1.50700 * 119.97228 * 179.97438 * 24 23 20 26 26 H 1.09005 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47430 * 300.00268 * 1 2 3 28 28 H 1.08997 * 109.46921 * 60.00777 * 1 2 3 29 29 H 1.08994 * 109.47430 * 239.99732 * 2 1 3 30 30 H 1.09006 * 109.46909 * 119.99366 * 2 1 3 31 31 H 1.08993 * 109.47571 * 59.99187 * 3 2 1 32 32 H 1.09006 * 109.46769 * 299.99451 * 3 2 1 33 33 H 0.96999 * 119.99942 * 180.02562 * 8 7 5 34 34 H 1.07998 * 119.96795 * 0.27909 * 17 16 13 35 35 H 1.09000 * 109.46855 * 90.00656 * 19 18 17 36 36 H 1.08998 * 109.47135 * 210.00022 * 19 18 17 37 37 H 1.08992 * 109.47291 * 330.00627 * 19 18 17 38 38 H 1.08994 * 109.47720 * 299.99737 * 22 21 20 39 39 H 1.09008 * 109.47061 * 60.00153 * 22 21 20 40 40 H 1.09004 * 109.47136 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.02845 * 179.97438 * 23 20 18 42 42 H 1.09011 * 109.46963 * 94.34105 * 25 24 23 43 43 H 1.08998 * 109.47338 * 214.33400 * 25 24 23 44 44 H 1.08999 * 109.47298 * 334.34242 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.3122 1.1797 6 1 5.0752 0.6963 1.2246 7 6 3.7438 1.9716 2.3171 8 7 2.9447 3.0113 2.2046 9 14 4.2786 1.3832 4.0074 10 1 5.1708 0.2051 3.8621 11 1 5.0085 2.4734 4.7030 12 1 3.0821 1.0037 4.8010 13 16 4.3336 1.6002 -1.4244 14 8 5.6122 2.1220 -1.0895 15 8 3.4483 2.2376 -2.3350 16 6 4.6075 -0.0237 -2.0510 17 6 4.4032 -1.1217 -1.2356 18 6 4.6167 -2.3957 -1.7245 19 6 4.3933 -3.5919 -0.8355 20 6 5.0371 -2.5733 -3.0349 21 8 5.2484 -3.8258 -3.5181 22 6 5.6798 -3.9329 -4.8761 23 6 5.2414 -1.4703 -3.8507 24 6 5.0264 -0.1979 -3.3569 25 6 5.2486 1.0009 -4.2426 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6766 1.9564 0.8898 32 1 1.6767 1.9563 -0.8901 33 1 2.6338 3.4723 2.9994 34 1 4.0717 -0.9831 -0.2171 35 1 3.3601 -3.9263 -0.9292 36 1 5.0643 -4.3972 -1.1344 37 1 4.5938 -3.3175 0.2001 38 1 4.9307 -3.4887 -5.5315 39 1 6.6272 -3.4079 -4.9988 40 1 5.8112 -4.9839 -5.1338 41 1 5.5689 -1.6059 -4.8709 42 1 4.3050 1.2911 -4.7047 43 1 5.6300 1.8287 -3.6447 44 1 5.9714 0.7501 -5.0189 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128050968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:48 Heat of formation + Delta-G solvation = -112.895074 kcal Electronic energy + Delta-G solvation = -27582.582156 eV Core-core repulsion = 23819.463133 eV Total energy + Delta-G solvation = -3763.119023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.41768 -38.77533 -38.02813 -37.83303 -36.60396 -34.91732 -34.31872 -32.68019 -31.49661 -30.31911 -28.49631 -27.59702 -25.92140 -25.44754 -23.73007 -22.82088 -21.90741 -20.29221 -19.07585 -18.58601 -18.25005 -17.95672 -17.35850 -16.84724 -16.62432 -16.27578 -15.58938 -15.48565 -15.19696 -15.01170 -14.85461 -14.54327 -14.37463 -14.21592 -13.99870 -13.64636 -13.45397 -13.28330 -13.20130 -12.97094 -12.89745 -12.86820 -12.80249 -12.75331 -12.63689 -12.39960 -12.16337 -12.07582 -12.00789 -11.96117 -11.79831 -11.51390 -11.31360 -10.86743 -9.89223 -9.57291 -9.38787 -8.20472 -6.00233 -0.19809 -0.10063 0.18363 1.49838 1.52583 1.65131 2.19124 2.29196 2.39416 2.62678 2.90994 3.15078 3.48613 3.68300 3.92337 3.99525 4.07169 4.25383 4.28853 4.37781 4.37985 4.39943 4.44766 4.49115 4.57678 4.58236 4.67207 4.72526 4.73825 4.84361 4.93585 5.00702 5.08288 5.10423 5.17878 5.23292 5.29050 5.30796 5.34486 5.51865 5.64670 5.67375 5.92443 6.26142 6.49584 7.06914 7.46334 8.83049 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.005124 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.141872 B = 5463.157389 C = 5939.802365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.121 3.879 4 N -0.850 5.850 5 C -0.305 4.305 6 H 0.088 0.912 7 C 0.003 3.997 8 N -0.887 5.887 9 Si 0.976 3.024 10 H -0.255 1.255 11 H -0.286 1.286 12 H -0.269 1.269 13 S 2.630 3.370 14 O -1.019 7.019 15 O -1.022 7.022 16 C -0.703 4.703 17 C 0.004 3.996 18 C -0.152 4.152 19 C -0.099 4.099 20 C 0.173 3.827 21 O -0.315 6.315 22 C 0.011 3.989 23 C -0.221 4.221 24 C 0.023 3.977 25 C -0.148 4.148 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.271 0.729 34 H 0.149 0.851 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.170 0.830 42 H 0.098 0.902 43 H 0.039 0.961 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 -15.601 -9.922 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.006 4.006 4 N -0.681 5.681 5 C -0.441 4.441 6 H 0.106 0.894 7 C -0.203 4.203 8 N -0.526 5.526 9 Si 0.799 3.201 10 H -0.179 1.179 11 H -0.212 1.212 12 H -0.194 1.194 13 S 2.734 3.266 14 O -1.009 7.009 15 O -1.011 7.011 16 C -0.792 4.792 17 C -0.015 4.015 18 C -0.154 4.154 19 C -0.156 4.156 20 C 0.127 3.873 21 O -0.227 6.227 22 C -0.083 4.083 23 C -0.241 4.241 24 C 0.022 3.978 25 C -0.204 4.204 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.166 0.834 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.146 0.854 41 H 0.188 0.812 42 H 0.116 0.884 43 H 0.058 0.942 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.670 -14.875 -10.288 18.099 hybrid contribution 0.341 0.147 0.568 0.679 sum 1.011 -14.728 -9.721 17.675 Atomic orbital electron populations 1.21660 0.94200 1.02356 1.01720 1.21942 0.96837 0.96878 1.01692 1.21359 0.79509 0.97034 1.02664 1.52541 1.12079 1.86115 1.17412 1.19329 1.12398 1.26573 0.85807 0.89404 1.26292 0.97076 0.93409 1.03475 1.70112 1.34180 1.17189 1.31116 0.85145 0.78585 0.78682 0.77647 1.17877 1.21248 1.19353 1.04526 0.73201 0.74771 0.74113 1.93383 1.44801 1.78529 1.84142 1.93361 1.66108 1.74769 1.66896 1.30526 1.20954 1.22764 1.04950 1.20928 0.91088 0.90328 0.99162 1.19636 1.06034 0.96026 0.93662 1.20638 1.03095 0.93906 0.97946 1.19052 0.91523 0.84356 0.92403 1.86082 1.81388 1.23680 1.31589 1.23499 1.00201 1.05875 0.78738 1.21361 1.09955 0.90535 1.02202 1.19482 0.90633 0.96546 0.91180 1.21305 1.05060 0.93902 1.00157 0.90856 0.92833 0.92864 0.92931 0.91328 0.89412 0.93255 0.91955 0.83359 0.90132 0.90280 0.90898 0.91333 0.91470 0.85429 0.81225 0.88353 0.94160 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.91 71.98 0.71 -3.51 16 2 C -0.13 -4.93 5.51 30.60 0.17 -4.76 16 3 C 0.12 5.60 5.31 86.38 0.46 6.06 16 4 N -0.85 -42.96 1.95 -343.47 -0.67 -43.63 16 5 C -0.30 -15.96 8.11 84.03 0.68 -15.28 16 6 H 0.09 4.51 7.91 -2.91 -0.02 4.49 16 7 C 0.00 0.17 5.01 84.86 0.42 0.59 16 8 N -0.89 -48.38 11.55 21.65 0.25 -48.13 16 9 Si 0.98 40.35 29.60 68.60 2.03 42.38 16 10 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 11 H -0.29 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 13 S 2.63 132.56 4.27 -56.49 -0.24 132.32 16 14 O -1.02 -58.41 16.95 -128.00 -2.17 -60.58 16 15 O -1.02 -53.41 15.44 -128.00 -1.98 -55.38 16 16 C -0.70 -29.10 5.83 22.28 0.13 -28.97 16 17 C 0.00 0.14 7.95 22.25 0.18 0.32 16 18 C -0.15 -4.69 5.89 -19.77 -0.12 -4.81 16 19 C -0.10 -2.38 9.79 71.24 0.70 -1.69 16 20 C 0.17 4.82 6.66 22.51 0.15 4.97 16 21 O -0.31 -6.90 9.54 -92.45 -0.88 -7.78 16 22 C 0.01 0.13 9.81 113.37 1.11 1.25 16 23 C -0.22 -6.10 8.67 22.37 0.19 -5.91 16 24 C 0.02 0.82 5.87 -19.88 -0.12 0.70 16 25 C -0.15 -4.74 8.74 71.24 0.62 -4.12 16 26 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.87 6.86 -2.39 -0.02 1.85 16 30 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.09 4.40 5.67 -2.39 -0.01 4.39 16 32 H 0.05 2.33 6.89 -2.38 -0.02 2.31 16 33 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 34 H 0.15 5.59 6.01 -2.91 -0.02 5.57 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 1.69 7.53 -2.39 -0.02 1.68 16 37 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 38 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 39 H 0.07 0.74 7.66 -2.38 -0.02 0.72 16 40 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.17 3.19 6.30 -2.91 -0.02 3.17 16 42 H 0.10 3.04 8.13 -2.38 -0.02 3.02 16 43 H 0.04 1.51 6.63 -2.39 -0.02 1.50 16 44 H 0.12 2.69 8.06 -2.39 -0.02 2.67 16 Total: -1.00 -72.28 364.24 2.64 -69.64 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 1.00 Total: 26.29 kcal Atomic # 6 Polarization: -60.43 SS G_CDS: 5.30 Total: -55.13 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -0.42 Total: -91.76 kcal Atomic # 8 Polarization: -118.72 SS G_CDS: -5.03 Total: -123.74 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 16 Polarization: 132.56 SS G_CDS: -0.24 Total: 132.32 kcal Total: -72.28 2.64 -69.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128050968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.257 kcal (2) G-P(sol) polarization free energy of solvation -72.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds