Wall clock time and date at job start Tue Mar 31 2020 14:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.46499 * 2 1 4 4 C 1.35846 * 120.90195 * 265.02057 * 3 2 1 5 5 C 1.41003 * 119.82194 * 179.97438 * 4 3 2 6 6 O 1.21792 * 119.15527 * 180.02562 * 5 4 3 7 7 O 1.34219 * 121.69060 * 0.02859 * 5 4 3 8 8 C 1.35029 * 121.46769 * 359.95273 * 7 5 4 9 9 C 1.38672 * 120.74921 * 180.02562 * 8 7 5 10 10 C 1.38515 * 119.78736 * 180.02562 * 9 8 7 11 11 O 1.35753 * 119.72916 * 179.97438 * 10 9 8 12 12 C 1.42894 * 117.00255 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.47348 * 179.97438 * 12 11 10 14 14 H 1.09009 * 109.47154 * 55.00054 * 13 12 11 15 15 C 1.47200 * 109.47451 * 295.00116 * 13 12 11 16 16 N 9.62521 * 111.32632 * 55.19826 * 2 1 3 17 17 C 1.52996 * 109.47347 * 174.99898 * 13 12 11 18 18 C 1.50702 * 109.47159 * 185.00014 * 17 13 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.39366 * 120.54676 * 0.25081 * 10 9 8 27 27 C 1.36462 * 120.42973 * 359.50375 * 26 10 9 28 28 C 1.39975 * 119.79024 * 0.47327 * 27 26 10 29 29 H 1.09005 * 109.47113 * 299.99268 * 1 2 3 30 30 H 1.08993 * 109.47789 * 60.00204 * 1 2 3 31 31 H 1.09008 * 109.46717 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47113 * 240.00732 * 2 1 3 33 33 H 1.08993 * 109.47789 * 119.99796 * 2 1 3 34 34 H 1.07998 * 120.09168 * 359.96440 * 4 3 2 35 35 H 1.08004 * 120.10903 * 0.02562 * 9 8 7 36 36 H 1.08998 * 109.47221 * 59.99811 * 12 11 10 37 37 H 1.09002 * 109.47447 * 300.00036 * 12 11 10 38 38 H 1.09004 * 109.47066 * 65.00217 * 17 13 12 39 39 H 1.08994 * 109.47405 * 305.00047 * 17 13 12 40 40 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 41 41 H 1.08003 * 119.78501 * 179.72656 * 26 10 9 42 42 H 1.07998 * 120.10838 * 180.25732 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3601 2.0450 -1.1612 5 6 2.8272 3.3752 -1.1348 6 8 3.1172 3.9231 -2.1831 7 8 2.9604 4.0529 0.0160 8 6 2.6517 3.4914 1.2046 9 6 2.7946 4.2057 2.3846 10 6 2.4725 3.6099 3.5929 11 8 2.6133 4.3100 4.7474 12 6 2.2638 3.6392 5.9597 13 6 2.4874 4.5795 7.1456 14 1 1.9333 5.5045 6.9854 15 6 3.9227 4.8823 7.2681 16 7 5.0305 5.1173 7.3624 17 6 1.9967 3.9070 8.4293 18 6 2.1030 4.8777 9.5772 19 1 2.4822 5.8747 9.4080 20 6 1.7103 4.4949 10.8423 21 7 1.2483 3.2810 11.0483 22 14 1.8349 5.7006 12.2636 23 1 2.3817 6.9907 11.7719 24 1 0.4859 5.9239 12.8430 25 1 2.7356 5.1459 13.3059 26 6 2.0105 2.2956 3.6337 27 6 1.8593 1.5801 2.4816 28 6 2.1797 2.1665 1.2516 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5137 0.8899 34 1 2.2634 1.5237 -2.1021 35 1 3.1558 5.2232 2.3616 36 1 2.8868 2.7525 6.0770 37 1 1.2152 3.3439 5.9223 38 1 2.6097 3.0300 8.6372 39 1 0.9574 3.6028 8.3058 40 1 0.9724 3.0116 11.9384 41 1 1.7672 1.8417 4.5830 42 1 1.4970 0.5634 2.5189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153281373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:30 Heat of formation + Delta-G solvation = -75.475929 kcal Electronic energy + Delta-G solvation = -25996.159910 eV Core-core repulsion = 22099.219552 eV Total energy + Delta-G solvation = -3896.940358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.03038 -41.15601 -39.43857 -38.36093 -37.87914 -36.56274 -35.60988 -33.81520 -32.26824 -32.03295 -30.42661 -28.91300 -26.16713 -25.92837 -24.68034 -24.25914 -23.52348 -22.19383 -20.68715 -19.34211 -18.94438 -18.54267 -18.31119 -17.94619 -17.86871 -16.88524 -16.57110 -16.29818 -16.14341 -15.47394 -15.31949 -15.11682 -14.87136 -14.81040 -14.52735 -14.30954 -14.23938 -14.06298 -13.84023 -13.74684 -13.30447 -13.07589 -13.04031 -12.88876 -12.72053 -12.51049 -12.44812 -12.29580 -12.07624 -11.87405 -11.79413 -11.56715 -11.33743 -11.22592 -10.81654 -10.54728 -9.94274 -9.12159 -8.20766 -6.27259 -0.78634 -0.06133 0.49149 1.14078 1.39665 1.44486 1.53122 1.74099 1.86851 1.96738 2.17616 2.43520 2.61461 3.10891 3.11885 3.18258 3.21893 3.37656 3.67191 3.87485 3.93301 4.13054 4.18908 4.22165 4.26358 4.42023 4.46923 4.53797 4.62816 4.71825 4.74389 4.76664 4.79232 5.02816 5.09654 5.10863 5.16256 5.31384 5.34978 5.46040 5.46663 5.59765 5.78058 6.05460 6.14035 6.24315 6.35507 6.73027 6.86470 7.41383 8.90018 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.021921 B = 0.002263 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.015561 B =12368.915998 C =13310.518019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C 0.075 3.925 4 C -0.288 4.288 5 C 0.505 3.495 6 O -0.521 6.521 7 O -0.293 6.293 8 C 0.168 3.832 9 C -0.198 4.198 10 C 0.191 3.809 11 O -0.320 6.320 12 C 0.068 3.932 13 C 0.019 3.981 14 H 0.129 0.871 15 C 0.251 3.749 16 N -0.505 5.505 17 C 0.041 3.959 18 C -0.540 4.540 19 H 0.052 0.948 20 C 0.017 3.983 21 N -0.918 5.918 22 Si 0.943 3.057 23 H -0.273 1.273 24 H -0.273 1.273 25 H -0.286 1.286 26 C -0.221 4.221 27 C 0.004 3.996 28 C -0.203 4.203 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.178 0.822 35 H 0.141 0.859 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.013 0.987 39 H 0.051 0.949 40 H 0.265 0.735 41 H 0.171 0.829 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 -12.025 -20.503 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C 0.074 3.926 4 C -0.307 4.307 5 C 0.359 3.641 6 O -0.414 6.414 7 O -0.205 6.205 8 C 0.123 3.877 9 C -0.217 4.217 10 C 0.144 3.856 11 O -0.233 6.233 12 C -0.007 4.007 13 C -0.002 4.002 14 H 0.146 0.854 15 C -0.065 4.065 16 N -0.182 5.182 17 C 0.002 3.998 18 C -0.578 4.578 19 H 0.070 0.930 20 C -0.183 4.183 21 N -0.558 5.558 22 Si 0.770 3.230 23 H -0.198 1.198 24 H -0.199 1.199 25 H -0.212 1.212 26 C -0.239 4.239 27 C -0.014 4.014 28 C -0.204 4.204 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.196 0.804 35 H 0.159 0.841 36 H 0.104 0.896 37 H 0.141 0.859 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.189 0.811 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.219 -11.121 -20.676 23.853 hybrid contribution 0.012 1.021 0.956 1.399 sum -4.207 -10.100 -19.720 22.552 Atomic orbital electron populations 1.21788 0.92503 1.03793 1.02620 1.20949 0.97495 0.88396 1.06411 1.21882 0.84561 0.96692 0.89510 1.22308 1.12603 0.93757 1.02022 1.19759 0.76485 0.87553 0.80347 1.90932 1.51024 1.72155 1.27256 1.83458 1.73441 1.48568 1.15000 1.18750 0.95042 0.91581 0.82315 1.19516 1.11791 1.02714 0.87696 1.18902 0.90862 0.90718 0.85165 1.86076 1.81188 1.42395 1.13613 1.23188 1.04031 0.94812 0.78710 1.19268 0.82198 1.02441 0.96311 0.85358 1.29545 0.95319 0.91444 0.90207 1.81055 1.14654 1.10887 1.11632 1.18991 0.97756 0.94987 0.88026 1.21522 1.42586 0.99497 0.94185 0.92979 1.25591 0.94993 0.96583 1.01104 1.69995 1.43925 1.18876 1.22990 0.85725 0.77965 0.79547 0.79808 1.19760 1.19863 1.21230 1.21507 1.06989 0.93219 1.02194 1.21124 0.91200 1.00816 0.88217 1.19170 1.11803 0.93209 0.96201 0.91998 0.92826 0.89629 0.87892 0.87248 0.80444 0.84103 0.89566 0.85944 0.96824 0.93104 0.92622 0.81135 0.79880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.89 71.98 0.71 0.09 16 2 C -0.10 -0.44 5.58 29.85 0.17 -0.27 16 3 C 0.07 0.95 5.33 -18.28 -0.10 0.85 16 4 C -0.29 -5.04 9.60 22.39 0.21 -4.82 16 5 C 0.50 13.53 7.89 68.50 0.54 14.07 16 6 O -0.52 -17.57 17.91 18.97 0.34 -17.23 16 7 O -0.29 -8.11 9.82 14.66 0.14 -7.96 16 8 C 0.17 3.83 6.76 22.98 0.16 3.98 16 9 C -0.20 -4.61 9.94 22.44 0.22 -4.38 16 10 C 0.19 3.98 6.69 22.61 0.15 4.13 16 11 O -0.32 -7.73 9.86 -90.79 -0.89 -8.62 16 12 C 0.07 1.48 4.08 71.98 0.29 1.78 16 13 C 0.02 0.60 2.45 -12.60 -0.03 0.57 16 14 H 0.13 3.71 8.14 -2.38 -0.02 3.69 16 15 C 0.25 9.58 13.71 89.44 1.23 10.81 16 16 N -0.51 -21.67 18.54 20.01 0.37 -21.30 16 17 C 0.04 1.63 4.42 29.85 0.13 1.76 16 18 C -0.54 -26.49 8.60 25.60 0.22 -26.27 16 19 H 0.05 2.58 7.59 -2.91 -0.02 2.56 16 20 C 0.02 0.87 5.46 84.66 0.46 1.33 16 21 N -0.92 -49.02 13.29 21.45 0.28 -48.73 16 22 Si 0.94 41.44 29.54 68.60 2.03 43.46 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 26 C -0.22 -3.13 8.96 22.13 0.20 -2.93 16 27 C 0.00 0.04 9.37 22.28 0.21 0.25 16 28 C -0.20 -3.28 5.87 -20.11 -0.12 -3.40 16 29 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.08 0.12 8.14 -2.38 -0.02 0.10 16 32 H 0.10 0.24 8.07 -2.38 -0.02 0.22 16 33 H 0.11 0.11 6.88 -2.39 -0.02 0.09 16 34 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 36 H 0.09 1.71 7.63 -2.39 -0.02 1.69 16 37 H 0.12 1.92 7.66 -2.39 -0.02 1.90 16 38 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.26 13.47 8.31 -92.70 -0.77 12.70 16 41 H 0.17 1.63 6.24 -2.91 -0.02 1.61 16 42 H 0.18 0.53 6.64 -2.91 -0.02 0.51 16 Total: -1.00 -70.96 368.84 7.98 -62.97 By element: Atomic # 1 Polarization: -1.20 SS G_CDS: 1.06 Total: -0.14 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 4.66 Total: -2.45 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: 0.66 Total: -70.03 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.41 Total: -33.81 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -70.96 7.98 -62.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153281373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.504 kcal (2) G-P(sol) polarization free energy of solvation -70.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds